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Genes within 1Mb (chr1:30736949:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.16e-01 -0.12 0.0757 0.385 B L1
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 9.92e-01 0.000597 0.061 0.385 B L1
ENSG00000134644 PUM1 -329042 sc-eQTL 1.02e-01 0.0836 0.0509 0.385 B L1
ENSG00000162510 MATN1 13364 sc-eQTL 8.96e-02 0.0911 0.0535 0.385 B L1
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.35e-01 0.02 0.0421 0.385 B L1
ENSG00000162517 PEF1 -907947 sc-eQTL 1.33e-01 0.0955 0.0633 0.385 B L1
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 3.99e-02 -0.101 0.0489 0.385 B L1
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.22e-01 -0.0903 0.0581 0.385 B L1
ENSG00000060688 SNRNP40 -559839 sc-eQTL 9.30e-01 0.00585 0.0667 0.385 CD4T L1
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 6.14e-01 -0.0263 0.0521 0.385 CD4T L1
ENSG00000134644 PUM1 -329042 sc-eQTL 3.49e-01 -0.0434 0.0463 0.385 CD4T L1
ENSG00000162511 LAPTM5 -20825 sc-eQTL 7.63e-02 -0.0909 0.0511 0.385 CD4T L1
ENSG00000162517 PEF1 -907947 sc-eQTL 8.45e-01 -0.0105 0.0538 0.385 CD4T L1
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 3.02e-01 -0.0475 0.0459 0.385 CD4T L1
ENSG00000287510 AL137857.1 5256 sc-eQTL 6.29e-01 -0.0267 0.0551 0.385 CD4T L1
ENSG00000060688 SNRNP40 -559839 sc-eQTL 4.10e-01 0.0729 0.0883 0.385 CD8T L1
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 3.80e-01 -0.0518 0.0588 0.385 CD8T L1
ENSG00000134644 PUM1 -329042 sc-eQTL 8.63e-02 -0.0887 0.0515 0.385 CD8T L1
ENSG00000162511 LAPTM5 -20825 sc-eQTL 1.92e-01 -0.0657 0.0501 0.385 CD8T L1
ENSG00000162517 PEF1 -907947 sc-eQTL 2.94e-01 -0.065 0.0619 0.385 CD8T L1
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 8.88e-01 0.00833 0.059 0.385 CD8T L1
ENSG00000287510 AL137857.1 5256 sc-eQTL 7.03e-01 -0.0283 0.0741 0.385 CD8T L1
ENSG00000060688 SNRNP40 -559839 sc-eQTL 8.11e-01 0.0184 0.0769 0.378 DC L1
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 1.12e-01 0.145 0.0905 0.378 DC L1
ENSG00000134644 PUM1 -329042 sc-eQTL 2.35e-01 0.0847 0.0711 0.378 DC L1
ENSG00000162511 LAPTM5 -20825 sc-eQTL 4.77e-01 -0.0363 0.0509 0.378 DC L1
ENSG00000162517 PEF1 -907947 sc-eQTL 7.29e-01 -0.0286 0.0826 0.378 DC L1
ENSG00000168528 SERINC2 -672616 sc-eQTL 2.45e-01 -0.0977 0.0837 0.378 DC L1
ENSG00000284543 LINC01226 -769277 sc-eQTL 3.95e-01 -0.0474 0.0555 0.378 DC L1
ENSG00000287510 AL137857.1 5256 sc-eQTL 7.13e-01 0.0296 0.0805 0.378 DC L1
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.62e-01 -0.0833 0.0593 0.385 Mono L1
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 6.55e-01 0.033 0.0738 0.385 Mono L1
ENSG00000134644 PUM1 -329042 sc-eQTL 3.76e-01 -0.0419 0.0472 0.385 Mono L1
ENSG00000162511 LAPTM5 -20825 sc-eQTL 3.63e-01 0.0396 0.0435 0.385 Mono L1
ENSG00000162512 SDC3 -171809 sc-eQTL 9.38e-01 -0.00648 0.0837 0.385 Mono L1
ENSG00000162517 PEF1 -907947 sc-eQTL 4.42e-01 0.0452 0.0586 0.385 Mono L1
ENSG00000168528 SERINC2 -672616 sc-eQTL 3.57e-01 -0.0827 0.0896 0.385 Mono L1
ENSG00000284543 LINC01226 -769277 sc-eQTL 9.19e-01 -0.00801 0.0791 0.385 Mono L1
ENSG00000287510 AL137857.1 5256 sc-eQTL 3.28e-01 0.0676 0.069 0.385 Mono L1
ENSG00000060688 SNRNP40 -559839 sc-eQTL 2.27e-02 -0.19 0.0829 0.386 NK L1
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 6.33e-01 0.0275 0.0574 0.386 NK L1
ENSG00000134644 PUM1 -329042 sc-eQTL 9.67e-02 0.0999 0.0598 0.386 NK L1
ENSG00000162511 LAPTM5 -20825 sc-eQTL 1.15e-03 -0.223 0.0676 0.386 NK L1
ENSG00000162517 PEF1 -907947 sc-eQTL 2.79e-01 -0.0548 0.0505 0.386 NK L1
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 5.91e-01 -0.0419 0.0778 0.386 NK L1
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.57e-01 -0.102 0.0716 0.386 NK L1
ENSG00000060688 SNRNP40 -559839 sc-eQTL 2.35e-01 -0.075 0.0629 0.385 Other_T L1
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 6.89e-01 -0.027 0.0675 0.385 Other_T L1
ENSG00000134644 PUM1 -329042 sc-eQTL 5.11e-01 0.0399 0.0606 0.385 Other_T L1
ENSG00000162511 LAPTM5 -20825 sc-eQTL 4.09e-01 -0.0411 0.0497 0.385 Other_T L1
ENSG00000162517 PEF1 -907947 sc-eQTL 8.44e-01 0.0131 0.0664 0.385 Other_T L1
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 2.41e-01 -0.0954 0.0812 0.385 Other_T L1
ENSG00000287510 AL137857.1 5256 sc-eQTL 8.10e-02 0.148 0.0842 0.385 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -559839 sc-eQTL 3.57e-01 0.0907 0.0982 0.385 B_Activated L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 8.96e-01 -0.013 0.0993 0.385 B_Activated L2
ENSG00000134644 PUM1 -329042 sc-eQTL 4.17e-01 0.075 0.0921 0.385 B_Activated L2
ENSG00000162510 MATN1 13364 sc-eQTL 6.92e-01 -0.032 0.0806 0.385 B_Activated L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 7.93e-01 0.0147 0.0562 0.385 B_Activated L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.15e-01 0.0781 0.0955 0.385 B_Activated L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 2.83e-01 -0.0974 0.0905 0.385 B_Activated L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 2.56e-01 0.0912 0.08 0.385 B_Activated L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 3.58e-01 0.0849 0.0923 0.384 B_Intermediate L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 3.62e-01 -0.0703 0.0769 0.384 B_Intermediate L2
ENSG00000134644 PUM1 -329042 sc-eQTL 7.95e-01 0.0189 0.0727 0.384 B_Intermediate L2
ENSG00000162510 MATN1 13364 sc-eQTL 8.71e-02 0.129 0.0751 0.384 B_Intermediate L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.85e-01 -0.0188 0.0464 0.384 B_Intermediate L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.39e-01 0.0667 0.0861 0.384 B_Intermediate L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 8.06e-03 -0.171 0.0641 0.384 B_Intermediate L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 2.08e-01 -0.0916 0.0726 0.384 B_Intermediate L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.98e-01 -0.116 0.0896 0.386 B_Memory L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 2.13e-01 0.103 0.0826 0.386 B_Memory L2
ENSG00000134644 PUM1 -329042 sc-eQTL 3.99e-01 0.0609 0.072 0.386 B_Memory L2
ENSG00000162510 MATN1 13364 sc-eQTL 9.35e-01 -0.00568 0.069 0.386 B_Memory L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 5.17e-01 0.0396 0.0611 0.386 B_Memory L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.25e-01 -0.0652 0.0816 0.386 B_Memory L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 9.50e-01 -0.0044 0.07 0.386 B_Memory L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 8.15e-01 -0.0192 0.082 0.386 B_Memory L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 2.79e-03 -0.247 0.0817 0.385 B_Naive1 L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 4.15e-01 -0.0588 0.0719 0.385 B_Naive1 L2
ENSG00000134644 PUM1 -329042 sc-eQTL 9.40e-01 -0.00481 0.0636 0.385 B_Naive1 L2
ENSG00000162510 MATN1 13364 sc-eQTL 8.03e-02 0.113 0.064 0.385 B_Naive1 L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 8.31e-01 0.0092 0.0431 0.385 B_Naive1 L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.75e-01 0.0543 0.0758 0.385 B_Naive1 L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 2.43e-01 -0.0661 0.0564 0.385 B_Naive1 L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.32e-01 -0.105 0.0695 0.385 B_Naive1 L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 6.77e-01 0.0368 0.0882 0.386 B_Naive2 L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 3.69e-01 0.0654 0.0727 0.386 B_Naive2 L2
ENSG00000134644 PUM1 -329042 sc-eQTL 2.44e-01 0.0831 0.071 0.386 B_Naive2 L2
ENSG00000162510 MATN1 13364 sc-eQTL 2.56e-01 0.0776 0.0682 0.386 B_Naive2 L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.48e-01 0.0212 0.0464 0.386 B_Naive2 L2
ENSG00000162517 PEF1 -907947 sc-eQTL 6.11e-01 0.0431 0.0845 0.386 B_Naive2 L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 1.18e-01 -0.105 0.0673 0.386 B_Naive2 L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 4.40e-01 -0.0564 0.073 0.386 B_Naive2 L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 2.45e-01 -0.104 0.0891 0.382 CD4_CTL L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 6.58e-01 0.039 0.0879 0.382 CD4_CTL L2
ENSG00000134644 PUM1 -329042 sc-eQTL 1.93e-01 -0.112 0.0859 0.382 CD4_CTL L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 4.09e-02 -0.157 0.0761 0.382 CD4_CTL L2
ENSG00000162517 PEF1 -907947 sc-eQTL 7.81e-01 0.022 0.0788 0.382 CD4_CTL L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 7.28e-01 -0.0293 0.0841 0.382 CD4_CTL L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 4.68e-01 -0.0539 0.0741 0.382 CD4_CTL L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 2.04e-01 0.088 0.0691 0.385 CD4_Naive L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 7.95e-01 -0.016 0.0615 0.385 CD4_Naive L2
ENSG00000134644 PUM1 -329042 sc-eQTL 8.63e-01 -0.00851 0.0491 0.385 CD4_Naive L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 5.69e-02 -0.0998 0.0521 0.385 CD4_Naive L2
ENSG00000162517 PEF1 -907947 sc-eQTL 9.00e-01 0.00724 0.0577 0.385 CD4_Naive L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 6.82e-01 -0.0219 0.0533 0.385 CD4_Naive L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 5.58e-01 -0.0359 0.0612 0.385 CD4_Naive L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 7.29e-01 -0.0302 0.087 0.385 CD4_TCM L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 2.97e-01 -0.0732 0.0699 0.385 CD4_TCM L2
ENSG00000134644 PUM1 -329042 sc-eQTL 2.67e-01 -0.0689 0.0619 0.385 CD4_TCM L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 4.32e-02 -0.104 0.051 0.385 CD4_TCM L2
ENSG00000162517 PEF1 -907947 sc-eQTL 8.42e-01 0.0138 0.069 0.385 CD4_TCM L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 3.18e-01 -0.0652 0.0652 0.385 CD4_TCM L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 3.61e-01 0.0665 0.0726 0.385 CD4_TCM L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 8.21e-01 -0.0202 0.0889 0.385 CD4_TEM L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 3.67e-01 -0.0765 0.0846 0.385 CD4_TEM L2
ENSG00000134644 PUM1 -329042 sc-eQTL 1.14e-01 -0.111 0.0702 0.385 CD4_TEM L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 3.13e-02 -0.153 0.0706 0.385 CD4_TEM L2
ENSG00000162517 PEF1 -907947 sc-eQTL 2.47e-01 -0.0927 0.0797 0.385 CD4_TEM L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 2.14e-01 -0.104 0.0832 0.385 CD4_TEM L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 9.46e-01 -0.00563 0.0823 0.385 CD4_TEM L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.02e-01 0.155 0.0945 0.385 CD8_CTL L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 6.18e-01 -0.0364 0.0729 0.385 CD8_CTL L2
ENSG00000134644 PUM1 -329042 sc-eQTL 1.02e-01 -0.115 0.0704 0.385 CD8_CTL L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.53e-01 -0.0352 0.0784 0.385 CD8_CTL L2
ENSG00000162517 PEF1 -907947 sc-eQTL 6.38e-01 -0.0321 0.0683 0.385 CD8_CTL L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 9.72e-01 0.00294 0.0824 0.385 CD8_CTL L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 7.74e-01 0.0223 0.0775 0.385 CD8_CTL L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 6.48e-01 0.0396 0.0866 0.385 CD8_Naive L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 8.87e-01 0.0106 0.0747 0.385 CD8_Naive L2
ENSG00000134644 PUM1 -329042 sc-eQTL 1.35e-01 -0.0896 0.0598 0.385 CD8_Naive L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 1.38e-02 -0.141 0.0568 0.385 CD8_Naive L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.28e-01 -0.0635 0.08 0.385 CD8_Naive L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 6.78e-01 -0.0299 0.0719 0.385 CD8_Naive L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 7.63e-01 0.0236 0.0783 0.385 CD8_Naive L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 7.99e-01 -0.0247 0.0966 0.38 CD8_TCM L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 3.14e-01 -0.0891 0.0883 0.38 CD8_TCM L2
ENSG00000134644 PUM1 -329042 sc-eQTL 2.37e-01 -0.0985 0.083 0.38 CD8_TCM L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 3.38e-01 -0.0836 0.087 0.38 CD8_TCM L2
ENSG00000162517 PEF1 -907947 sc-eQTL 7.50e-01 -0.0284 0.0891 0.38 CD8_TCM L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 1.39e-01 0.119 0.0802 0.38 CD8_TCM L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 2.91e-01 -0.0861 0.0813 0.38 CD8_TCM L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.49e-01 -0.134 0.0925 0.379 CD8_TEM L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 7.30e-01 0.0308 0.0892 0.379 CD8_TEM L2
ENSG00000134644 PUM1 -329042 sc-eQTL 7.74e-01 -0.0263 0.0912 0.379 CD8_TEM L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.34e-01 0.0408 0.0857 0.379 CD8_TEM L2
ENSG00000162517 PEF1 -907947 sc-eQTL 5.62e-01 0.0468 0.0807 0.379 CD8_TEM L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 4.36e-01 0.0694 0.0888 0.379 CD8_TEM L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 8.60e-01 0.0142 0.0805 0.379 CD8_TEM L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 6.19e-01 -0.0462 0.0929 0.383 MAIT L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 3.76e-01 -0.0729 0.0822 0.383 MAIT L2
ENSG00000134644 PUM1 -329042 sc-eQTL 6.61e-01 0.0347 0.0789 0.383 MAIT L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 2.61e-02 -0.165 0.0736 0.383 MAIT L2
ENSG00000162517 PEF1 -907947 sc-eQTL 8.68e-01 0.0136 0.0818 0.383 MAIT L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 2.09e-01 -0.104 0.0826 0.383 MAIT L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 2.20e-02 0.195 0.0844 0.383 MAIT L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.09e-01 -0.15 0.093 0.382 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 2.28e-01 -0.0952 0.0788 0.382 NK_CD56bright L2
ENSG00000134644 PUM1 -329042 sc-eQTL 6.20e-01 0.0412 0.083 0.382 NK_CD56bright L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 4.34e-03 -0.232 0.0803 0.382 NK_CD56bright L2
ENSG00000162517 PEF1 -907947 sc-eQTL 6.60e-01 0.035 0.0796 0.382 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 6.93e-01 0.0326 0.0823 0.382 NK_CD56bright L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 6.21e-01 0.0401 0.0811 0.382 NK_CD56bright L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 8.00e-01 -0.0227 0.0892 0.386 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 5.41e-01 0.0403 0.0659 0.386 NK_CD56dim L2
ENSG00000134644 PUM1 -329042 sc-eQTL 2.01e-01 0.0865 0.0674 0.386 NK_CD56dim L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 4.05e-02 -0.147 0.0715 0.386 NK_CD56dim L2
ENSG00000162517 PEF1 -907947 sc-eQTL 1.49e-01 -0.0925 0.0639 0.386 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 8.67e-01 0.0152 0.0904 0.386 NK_CD56dim L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.31e-01 -0.112 0.0742 0.386 NK_CD56dim L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 5.78e-01 -0.0532 0.0956 0.388 NK_HLA L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 7.44e-01 -0.028 0.0854 0.388 NK_HLA L2
ENSG00000134644 PUM1 -329042 sc-eQTL 1.14e-03 0.268 0.081 0.388 NK_HLA L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 1.18e-02 -0.199 0.0782 0.388 NK_HLA L2
ENSG00000162517 PEF1 -907947 sc-eQTL 8.59e-01 -0.016 0.0895 0.388 NK_HLA L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 6.55e-01 0.0378 0.0845 0.388 NK_HLA L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 8.62e-02 -0.14 0.0811 0.388 NK_HLA L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 3.29e-03 -0.25 0.084 0.386 NK_cytokine L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 2.32e-01 0.0799 0.0667 0.386 NK_cytokine L2
ENSG00000134644 PUM1 -329042 sc-eQTL 4.81e-01 -0.0511 0.0723 0.386 NK_cytokine L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 2.21e-02 -0.182 0.0787 0.386 NK_cytokine L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.98e-01 -0.046 0.0678 0.386 NK_cytokine L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 2.59e-01 -0.0953 0.0842 0.386 NK_cytokine L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 6.36e-01 -0.0373 0.0786 0.386 NK_cytokine L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 8.73e-01 0.0157 0.0976 0.381 PB L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 4.80e-01 -0.08 0.113 0.381 PB L2
ENSG00000134644 PUM1 -329042 sc-eQTL 8.75e-01 0.0156 0.0983 0.381 PB L2
ENSG00000162510 MATN1 13364 sc-eQTL 6.82e-01 -0.0376 0.0916 0.381 PB L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 8.49e-01 -0.0125 0.0655 0.381 PB L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.63e-01 -0.0742 0.101 0.381 PB L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 8.07e-02 -0.156 0.0884 0.381 PB L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 5.92e-01 -0.0512 0.0953 0.381 PB L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 8.87e-01 -0.0097 0.0682 0.383 Pro_T L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 6.35e-01 0.0412 0.0865 0.383 Pro_T L2
ENSG00000134644 PUM1 -329042 sc-eQTL 7.43e-01 -0.0265 0.0807 0.383 Pro_T L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 3.30e-01 0.0565 0.0578 0.383 Pro_T L2
ENSG00000162517 PEF1 -907947 sc-eQTL 8.31e-02 0.147 0.0844 0.383 Pro_T L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 3.17e-01 -0.0809 0.0808 0.383 Pro_T L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 7.52e-01 0.0236 0.0744 0.383 Pro_T L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 7.02e-01 -0.0345 0.0902 0.385 Treg L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 7.57e-01 -0.027 0.0872 0.385 Treg L2
ENSG00000134644 PUM1 -329042 sc-eQTL 5.59e-01 -0.0408 0.0698 0.385 Treg L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 3.29e-02 -0.17 0.0791 0.385 Treg L2
ENSG00000162517 PEF1 -907947 sc-eQTL 5.84e-01 -0.0473 0.0863 0.385 Treg L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 5.38e-01 0.0503 0.0814 0.385 Treg L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.95e-01 -0.105 0.0811 0.385 Treg L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 8.28e-01 0.0201 0.0924 0.376 cDC L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 9.56e-01 -0.00549 0.1 0.376 cDC L2
ENSG00000134644 PUM1 -329042 sc-eQTL 5.63e-01 0.0498 0.0859 0.376 cDC L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.77e-01 -0.0252 0.0602 0.376 cDC L2
ENSG00000162517 PEF1 -907947 sc-eQTL 4.24e-01 -0.0699 0.0871 0.376 cDC L2
ENSG00000168528 SERINC2 -672616 sc-eQTL 5.58e-01 -0.0454 0.0773 0.376 cDC L2
ENSG00000284543 LINC01226 -769277 sc-eQTL 6.61e-01 -0.0334 0.076 0.376 cDC L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 6.17e-01 0.041 0.0818 0.376 cDC L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.61e-01 -0.0995 0.0707 0.385 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 8.65e-01 -0.0135 0.0793 0.385 cMono_IL1B L2
ENSG00000134644 PUM1 -329042 sc-eQTL 8.72e-01 -0.00867 0.0537 0.385 cMono_IL1B L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.44e-01 0.0218 0.0471 0.385 cMono_IL1B L2
ENSG00000162512 SDC3 -171809 sc-eQTL 2.57e-01 -0.101 0.0884 0.385 cMono_IL1B L2
ENSG00000162517 PEF1 -907947 sc-eQTL 7.89e-01 0.0195 0.0725 0.385 cMono_IL1B L2
ENSG00000168528 SERINC2 -672616 sc-eQTL 4.29e-01 -0.0711 0.0897 0.385 cMono_IL1B L2
ENSG00000284543 LINC01226 -769277 sc-eQTL 5.68e-01 0.0454 0.0793 0.385 cMono_IL1B L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.42e-01 0.108 0.0737 0.385 cMono_IL1B L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 9.45e-01 -0.00518 0.0748 0.385 cMono_S100A L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 9.61e-01 -0.00435 0.0883 0.385 cMono_S100A L2
ENSG00000134644 PUM1 -329042 sc-eQTL 6.54e-01 -0.0287 0.0638 0.385 cMono_S100A L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 1.95e-01 0.0636 0.0489 0.385 cMono_S100A L2
ENSG00000162512 SDC3 -171809 sc-eQTL 5.90e-01 -0.0457 0.0847 0.385 cMono_S100A L2
ENSG00000162517 PEF1 -907947 sc-eQTL 9.40e-02 0.128 0.076 0.385 cMono_S100A L2
ENSG00000168528 SERINC2 -672616 sc-eQTL 5.64e-01 -0.0519 0.0897 0.385 cMono_S100A L2
ENSG00000284543 LINC01226 -769277 sc-eQTL 3.83e-01 0.0636 0.0728 0.385 cMono_S100A L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 3.79e-01 0.0644 0.0731 0.385 cMono_S100A L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 6.11e-01 -0.0586 0.115 0.385 gdT L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 1.40e-01 -0.146 0.0982 0.385 gdT L2
ENSG00000134644 PUM1 -329042 sc-eQTL 9.03e-01 0.0124 0.102 0.385 gdT L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 8.28e-01 0.0241 0.111 0.385 gdT L2
ENSG00000162517 PEF1 -907947 sc-eQTL 5.33e-01 -0.0633 0.101 0.385 gdT L2
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 7.32e-01 0.0351 0.102 0.385 gdT L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 6.91e-02 0.179 0.0979 0.385 gdT L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 1.54e-01 -0.12 0.0836 0.378 intMono L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 1.30e-01 0.136 0.0898 0.378 intMono L2
ENSG00000134644 PUM1 -329042 sc-eQTL 6.32e-01 0.0367 0.0766 0.378 intMono L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.31e-01 -0.0289 0.0601 0.378 intMono L2
ENSG00000162512 SDC3 -171809 sc-eQTL 8.96e-01 0.0108 0.0823 0.378 intMono L2
ENSG00000162517 PEF1 -907947 sc-eQTL 9.36e-01 -0.00695 0.0865 0.378 intMono L2
ENSG00000168528 SERINC2 -672616 sc-eQTL 4.73e-02 -0.17 0.0853 0.378 intMono L2
ENSG00000284543 LINC01226 -769277 sc-eQTL 2.15e-01 -0.101 0.0813 0.378 intMono L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 6.90e-01 -0.0327 0.0816 0.378 intMono L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 4.93e-01 -0.0554 0.0807 0.382 ncMono L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 2.67e-01 -0.0956 0.0859 0.382 ncMono L2
ENSG00000134644 PUM1 -329042 sc-eQTL 7.15e-01 -0.0257 0.0704 0.382 ncMono L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.80e-01 -0.0264 0.0639 0.382 ncMono L2
ENSG00000162512 SDC3 -171809 sc-eQTL 1.50e-01 0.103 0.0713 0.382 ncMono L2
ENSG00000162517 PEF1 -907947 sc-eQTL 1.30e-01 -0.124 0.0817 0.382 ncMono L2
ENSG00000168528 SERINC2 -672616 sc-eQTL 2.83e-01 -0.0839 0.078 0.382 ncMono L2
ENSG00000284543 LINC01226 -769277 sc-eQTL 4.98e-01 -0.053 0.0781 0.382 ncMono L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 8.21e-01 0.0184 0.081 0.382 ncMono L2
ENSG00000060688 SNRNP40 -559839 sc-eQTL 4.08e-01 -0.079 0.0952 0.376 pDC L2
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 3.50e-01 0.0979 0.104 0.376 pDC L2
ENSG00000134644 PUM1 -329042 sc-eQTL 7.58e-01 -0.0268 0.0868 0.376 pDC L2
ENSG00000162511 LAPTM5 -20825 sc-eQTL 7.39e-01 -0.0269 0.0807 0.376 pDC L2
ENSG00000162517 PEF1 -907947 sc-eQTL 2.85e-01 -0.112 0.104 0.376 pDC L2
ENSG00000168528 SERINC2 -672616 sc-eQTL 6.75e-01 -0.0412 0.0979 0.376 pDC L2
ENSG00000284543 LINC01226 -769277 sc-eQTL 7.42e-01 0.0251 0.076 0.376 pDC L2
ENSG00000287510 AL137857.1 5256 sc-eQTL 9.38e-01 -0.00696 0.0894 0.376 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -559839 sc-eQTL 7.37e-01 -0.0297 0.0883 0.385 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 8.47e-01 -0.0142 0.0735 0.385 B_Memory LOneK1K
ENSG00000134644 PUM1 -329042 sc-eQTL 2.11e-01 0.0815 0.0649 0.385 B_Memory LOneK1K
ENSG00000162510 MATN1 13364 sc-eQTL 2.03e-01 0.0946 0.074 0.385 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -20825 sc-eQTL 8.65e-01 -0.00792 0.0467 0.385 B_Memory LOneK1K
ENSG00000162517 PEF1 -907947 sc-eQTL 3.63e-01 0.0704 0.0772 0.385 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 1.64e-02 -0.147 0.0609 0.385 B_Memory LOneK1K
ENSG00000287510 AL137857.1 5256 sc-eQTL 2.07e-01 -0.0849 0.067 0.385 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -559839 sc-eQTL 3.69e-02 -0.169 0.0802 0.385 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 8.98e-01 0.00823 0.0641 0.385 B_Naive LOneK1K
ENSG00000134644 PUM1 -329042 sc-eQTL 2.38e-01 0.0715 0.0604 0.385 B_Naive LOneK1K
ENSG00000162510 MATN1 13364 sc-eQTL 1.04e-01 0.0949 0.058 0.385 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -20825 sc-eQTL 9.63e-01 0.00193 0.0411 0.385 B_Naive LOneK1K
ENSG00000162517 PEF1 -907947 sc-eQTL 1.89e-01 0.0986 0.0748 0.385 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 1.68e-01 -0.0732 0.0528 0.385 B_Naive LOneK1K
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.29e-01 -0.0955 0.0627 0.385 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -559839 sc-eQTL 2.40e-01 -0.0796 0.0675 0.385 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 9.35e-01 -0.00628 0.0767 0.385 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -329042 sc-eQTL 4.52e-01 -0.0369 0.0489 0.385 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -20825 sc-eQTL 3.30e-01 0.0419 0.0429 0.385 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -171809 sc-eQTL 2.16e-01 -0.109 0.0875 0.385 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -907947 sc-eQTL 1.54e-01 0.0879 0.0614 0.385 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -672616 sc-eQTL 4.79e-01 -0.064 0.0902 0.385 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -769277 sc-eQTL 6.50e-01 0.0336 0.074 0.385 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.33e-01 0.104 0.0689 0.385 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -559839 sc-eQTL 6.17e-02 -0.141 0.0753 0.384 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 4.52e-01 0.0625 0.0829 0.384 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -329042 sc-eQTL 7.80e-01 0.0191 0.068 0.384 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -20825 sc-eQTL 6.17e-01 0.0273 0.0544 0.384 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -171809 sc-eQTL 1.47e-01 0.115 0.0791 0.384 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -907947 sc-eQTL 4.31e-01 -0.0569 0.0721 0.384 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -672616 sc-eQTL 6.70e-02 -0.151 0.0818 0.384 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -769277 sc-eQTL 2.63e-01 -0.0875 0.078 0.384 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 5256 sc-eQTL 8.82e-01 -0.0116 0.0783 0.384 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -559839 sc-eQTL 3.46e-02 -0.178 0.0836 0.386 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -560033 sc-eQTL 7.25e-01 0.0203 0.0577 0.386 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -329042 sc-eQTL 2.87e-01 0.0672 0.063 0.386 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -20825 sc-eQTL 2.25e-03 -0.214 0.0691 0.386 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -907947 sc-eQTL 4.17e-01 -0.0436 0.0536 0.386 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 18445 sc-eQTL 6.61e-01 -0.0358 0.0814 0.386 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 5256 sc-eQTL 1.18e-01 -0.11 0.0699 0.386 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134644 PUM1 -329042 eQTL 0.0112 -0.0372 0.0146 0.0 0.0 0.365
ENSG00000162511 LAPTM5 -20825 eQTL 0.00362 0.0301 0.0103 0.0 0.0 0.365

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -20825 1.56e-05 1.93e-05 3.06e-06 9.71e-06 3.06e-06 6.86e-06 2.6e-05 3.4e-06 1.73e-05 8.5e-06 2.22e-05 1.02e-05 2.93e-05 6.86e-06 5.22e-06 1.01e-05 8.54e-06 1.43e-05 4.28e-06 4.81e-06 8.57e-06 1.73e-05 1.78e-05 5.15e-06 2.45e-05 5.6e-06 9.09e-06 7.77e-06 1.75e-05 1.58e-05 1.24e-05 1.51e-06 1.81e-06 4.4e-06 7.51e-06 4.2e-06 1.71e-06 2.71e-06 3.61e-06 2.3e-06 1.28e-06 1.93e-05 2.75e-06 2.81e-07 2.11e-06 2.56e-06 3.02e-06 1.31e-06 1.35e-06