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Genes within 1Mb (chr1:30733959:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -562829 sc-eQTL 1.93e-02 -0.178 0.0757 0.464 B L1
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 7.02e-02 -0.111 0.0609 0.464 B L1
ENSG00000134644 PUM1 -332032 sc-eQTL 8.63e-01 0.00892 0.0515 0.464 B L1
ENSG00000162510 MATN1 10374 sc-eQTL 3.61e-01 0.0495 0.054 0.464 B L1
ENSG00000162511 LAPTM5 -23815 sc-eQTL 6.01e-01 0.0222 0.0424 0.464 B L1
ENSG00000162517 PEF1 -910937 sc-eQTL 9.08e-01 0.0074 0.064 0.464 B L1
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 1.34e-01 -0.0744 0.0494 0.464 B L1
ENSG00000287510 AL137857.1 2266 sc-eQTL 1.51e-01 -0.0843 0.0585 0.464 B L1
ENSG00000060688 SNRNP40 -562829 sc-eQTL 8.90e-01 -0.00922 0.0664 0.464 CD4T L1
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.13e-01 0.0263 0.0519 0.464 CD4T L1
ENSG00000134644 PUM1 -332032 sc-eQTL 2.23e-01 0.0563 0.0461 0.464 CD4T L1
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.26e-02 0.0989 0.0508 0.464 CD4T L1
ENSG00000162517 PEF1 -910937 sc-eQTL 4.44e-01 0.041 0.0535 0.464 CD4T L1
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 2.97e-03 -0.135 0.0449 0.464 CD4T L1
ENSG00000287510 AL137857.1 2266 sc-eQTL 6.86e-01 -0.0222 0.0549 0.464 CD4T L1
ENSG00000060688 SNRNP40 -562829 sc-eQTL 3.63e-01 -0.0803 0.0881 0.464 CD8T L1
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.35e-01 0.0279 0.0587 0.464 CD8T L1
ENSG00000134644 PUM1 -332032 sc-eQTL 7.73e-03 0.137 0.0509 0.464 CD8T L1
ENSG00000162511 LAPTM5 -23815 sc-eQTL 1.35e-04 0.189 0.0485 0.464 CD8T L1
ENSG00000162517 PEF1 -910937 sc-eQTL 6.10e-01 -0.0316 0.0618 0.464 CD8T L1
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 1.23e-02 -0.146 0.058 0.464 CD8T L1
ENSG00000287510 AL137857.1 2266 sc-eQTL 1.03e-01 0.12 0.0735 0.464 CD8T L1
ENSG00000060688 SNRNP40 -562829 sc-eQTL 3.83e-01 -0.0678 0.0776 0.459 DC L1
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 1.67e-01 0.127 0.0916 0.459 DC L1
ENSG00000134644 PUM1 -332032 sc-eQTL 9.28e-01 -0.00651 0.0721 0.459 DC L1
ENSG00000162511 LAPTM5 -23815 sc-eQTL 6.88e-01 -0.0207 0.0514 0.459 DC L1
ENSG00000162517 PEF1 -910937 sc-eQTL 6.66e-01 -0.0361 0.0834 0.459 DC L1
ENSG00000168528 SERINC2 -675606 sc-eQTL 5.44e-01 -0.0515 0.0848 0.459 DC L1
ENSG00000284543 LINC01226 -772267 sc-eQTL 7.36e-01 0.0189 0.0562 0.459 DC L1
ENSG00000287510 AL137857.1 2266 sc-eQTL 3.84e-01 -0.0709 0.0812 0.459 DC L1
ENSG00000060688 SNRNP40 -562829 sc-eQTL 8.22e-01 0.0135 0.0601 0.464 Mono L1
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.66e-01 0.0322 0.0745 0.464 Mono L1
ENSG00000134644 PUM1 -332032 sc-eQTL 7.43e-01 -0.0157 0.0478 0.464 Mono L1
ENSG00000162511 LAPTM5 -23815 sc-eQTL 8.11e-01 0.0105 0.0439 0.464 Mono L1
ENSG00000162512 SDC3 -174799 sc-eQTL 7.71e-02 -0.149 0.0838 0.464 Mono L1
ENSG00000162517 PEF1 -910937 sc-eQTL 7.26e-01 -0.0208 0.0592 0.464 Mono L1
ENSG00000168528 SERINC2 -675606 sc-eQTL 9.72e-01 -0.00318 0.0906 0.464 Mono L1
ENSG00000284543 LINC01226 -772267 sc-eQTL 4.48e-01 0.0606 0.0797 0.464 Mono L1
ENSG00000287510 AL137857.1 2266 sc-eQTL 2.10e-01 0.0873 0.0695 0.464 Mono L1
ENSG00000060688 SNRNP40 -562829 sc-eQTL 8.02e-01 -0.0211 0.0839 0.466 NK L1
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 9.64e-01 -0.00257 0.0574 0.466 NK L1
ENSG00000134644 PUM1 -332032 sc-eQTL 6.93e-01 0.0238 0.0602 0.466 NK L1
ENSG00000162511 LAPTM5 -23815 sc-eQTL 8.34e-02 0.12 0.0689 0.466 NK L1
ENSG00000162517 PEF1 -910937 sc-eQTL 4.00e-01 -0.0426 0.0505 0.466 NK L1
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 2.71e-01 -0.0858 0.0777 0.466 NK L1
ENSG00000287510 AL137857.1 2266 sc-eQTL 4.23e-01 0.0576 0.0719 0.466 NK L1
ENSG00000060688 SNRNP40 -562829 sc-eQTL 4.73e-01 -0.0456 0.0635 0.464 Other_T L1
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 4.41e-01 0.0524 0.0678 0.464 Other_T L1
ENSG00000134644 PUM1 -332032 sc-eQTL 9.86e-01 0.00107 0.0611 0.464 Other_T L1
ENSG00000162511 LAPTM5 -23815 sc-eQTL 4.08e-02 0.102 0.0496 0.464 Other_T L1
ENSG00000162517 PEF1 -910937 sc-eQTL 1.89e-02 0.156 0.066 0.464 Other_T L1
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 9.43e-01 -0.00588 0.082 0.464 Other_T L1
ENSG00000287510 AL137857.1 2266 sc-eQTL 3.82e-01 0.0747 0.0852 0.464 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -562829 sc-eQTL 9.93e-01 0.000855 0.101 0.454 B_Activated L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 5.61e-01 -0.059 0.101 0.454 B_Activated L2
ENSG00000134644 PUM1 -332032 sc-eQTL 5.97e-01 -0.0499 0.0941 0.454 B_Activated L2
ENSG00000162510 MATN1 10374 sc-eQTL 9.18e-01 -0.00846 0.0823 0.454 B_Activated L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.97e-01 -0.0304 0.0574 0.454 B_Activated L2
ENSG00000162517 PEF1 -910937 sc-eQTL 4.20e-01 0.0788 0.0975 0.454 B_Activated L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 6.49e-01 0.0423 0.0927 0.454 B_Activated L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 4.37e-01 -0.0638 0.0819 0.454 B_Activated L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 6.55e-01 0.0423 0.0944 0.464 B_Intermediate L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 7.95e-01 -0.0205 0.0787 0.464 B_Intermediate L2
ENSG00000134644 PUM1 -332032 sc-eQTL 7.77e-01 -0.021 0.0743 0.464 B_Intermediate L2
ENSG00000162510 MATN1 10374 sc-eQTL 3.53e-01 0.0718 0.0772 0.464 B_Intermediate L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 1.14e-01 0.0748 0.0472 0.464 B_Intermediate L2
ENSG00000162517 PEF1 -910937 sc-eQTL 1.89e-01 0.116 0.0877 0.464 B_Intermediate L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 4.57e-01 -0.0495 0.0665 0.464 B_Intermediate L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 1.72e-02 -0.177 0.0735 0.464 B_Intermediate L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 5.22e-02 -0.179 0.0916 0.463 B_Memory L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 8.11e-01 -0.0204 0.0851 0.463 B_Memory L2
ENSG00000134644 PUM1 -332032 sc-eQTL 8.58e-01 0.0133 0.0741 0.463 B_Memory L2
ENSG00000162510 MATN1 10374 sc-eQTL 4.72e-02 0.14 0.0702 0.463 B_Memory L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.83e-01 0.0345 0.0628 0.463 B_Memory L2
ENSG00000162517 PEF1 -910937 sc-eQTL 6.35e-01 -0.0399 0.0839 0.463 B_Memory L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 7.87e-01 -0.0195 0.0719 0.463 B_Memory L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 5.72e-02 0.16 0.0835 0.463 B_Memory L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 6.53e-01 -0.0374 0.0832 0.464 B_Naive1 L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 2.55e-02 -0.16 0.071 0.464 B_Naive1 L2
ENSG00000134644 PUM1 -332032 sc-eQTL 9.15e-01 0.00678 0.0634 0.464 B_Naive1 L2
ENSG00000162510 MATN1 10374 sc-eQTL 2.84e-01 0.0689 0.0642 0.464 B_Naive1 L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 2.36e-01 0.0509 0.0428 0.464 B_Naive1 L2
ENSG00000162517 PEF1 -910937 sc-eQTL 1.77e-01 0.102 0.0754 0.464 B_Naive1 L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 2.58e-01 -0.0638 0.0563 0.464 B_Naive1 L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 8.42e-01 -0.0139 0.0697 0.464 B_Naive1 L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 2.19e-04 -0.326 0.0867 0.464 B_Naive2 L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 4.04e-01 -0.0618 0.0739 0.464 B_Naive2 L2
ENSG00000134644 PUM1 -332032 sc-eQTL 9.60e-01 -0.00366 0.0724 0.464 B_Naive2 L2
ENSG00000162510 MATN1 10374 sc-eQTL 8.90e-01 0.00959 0.0695 0.464 B_Naive2 L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 3.00e-02 0.102 0.0467 0.464 B_Naive2 L2
ENSG00000162517 PEF1 -910937 sc-eQTL 2.83e-02 -0.187 0.0849 0.464 B_Naive2 L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 1.67e-03 -0.214 0.0671 0.464 B_Naive2 L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 4.33e-01 -0.0582 0.0741 0.464 B_Naive2 L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 1.39e-01 0.133 0.0893 0.457 CD4_CTL L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 3.22e-01 0.0876 0.0881 0.457 CD4_CTL L2
ENSG00000134644 PUM1 -332032 sc-eQTL 4.70e-01 -0.0627 0.0865 0.457 CD4_CTL L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 2.29e-01 0.0929 0.077 0.457 CD4_CTL L2
ENSG00000162517 PEF1 -910937 sc-eQTL 7.32e-01 0.0271 0.0792 0.457 CD4_CTL L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 8.31e-01 0.0181 0.0845 0.457 CD4_CTL L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 6.10e-01 0.038 0.0745 0.457 CD4_CTL L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 1.86e-01 -0.0914 0.0689 0.464 CD4_Naive L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 5.89e-01 -0.0332 0.0613 0.464 CD4_Naive L2
ENSG00000134644 PUM1 -332032 sc-eQTL 6.21e-02 0.0911 0.0486 0.464 CD4_Naive L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 1.59e-01 0.0739 0.0522 0.464 CD4_Naive L2
ENSG00000162517 PEF1 -910937 sc-eQTL 7.45e-01 0.0187 0.0576 0.464 CD4_Naive L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 1.59e-03 -0.166 0.052 0.464 CD4_Naive L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 4.50e-01 -0.0462 0.0611 0.464 CD4_Naive L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 4.30e-01 0.0686 0.0869 0.464 CD4_TCM L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.96e-01 0.0275 0.0701 0.464 CD4_TCM L2
ENSG00000134644 PUM1 -332032 sc-eQTL 5.05e-01 0.0414 0.062 0.464 CD4_TCM L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 1.47e-02 0.125 0.0508 0.464 CD4_TCM L2
ENSG00000162517 PEF1 -910937 sc-eQTL 9.33e-01 0.00582 0.069 0.464 CD4_TCM L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 2.81e-02 -0.143 0.0646 0.464 CD4_TCM L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 6.08e-01 -0.0374 0.0727 0.464 CD4_TCM L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 8.35e-01 0.0182 0.0875 0.464 CD4_TEM L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 3.35e-02 0.177 0.0825 0.464 CD4_TEM L2
ENSG00000134644 PUM1 -332032 sc-eQTL 7.77e-01 -0.0197 0.0695 0.464 CD4_TEM L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 1.72e-01 0.0959 0.07 0.464 CD4_TEM L2
ENSG00000162517 PEF1 -910937 sc-eQTL 5.78e-01 0.0438 0.0787 0.464 CD4_TEM L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 5.87e-01 -0.0447 0.0822 0.464 CD4_TEM L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 9.68e-03 0.208 0.0797 0.464 CD4_TEM L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 9.65e-01 -0.00425 0.0962 0.464 CD8_CTL L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 5.81e-01 0.0407 0.0737 0.464 CD8_CTL L2
ENSG00000134644 PUM1 -332032 sc-eQTL 1.21e-01 0.111 0.0712 0.464 CD8_CTL L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 7.38e-02 0.141 0.0787 0.464 CD8_CTL L2
ENSG00000162517 PEF1 -910937 sc-eQTL 1.10e-01 0.11 0.0687 0.464 CD8_CTL L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 1.49e-03 -0.262 0.0814 0.464 CD8_CTL L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 2.47e-01 0.0908 0.0782 0.464 CD8_CTL L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 7.32e-02 -0.155 0.0861 0.464 CD8_Naive L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 5.44e-01 0.0454 0.0747 0.464 CD8_Naive L2
ENSG00000134644 PUM1 -332032 sc-eQTL 4.45e-01 0.046 0.0601 0.464 CD8_Naive L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 6.34e-06 0.254 0.0549 0.464 CD8_Naive L2
ENSG00000162517 PEF1 -910937 sc-eQTL 2.11e-01 -0.1 0.0799 0.464 CD8_Naive L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 1.06e-01 -0.116 0.0715 0.464 CD8_Naive L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 3.77e-01 0.0692 0.0782 0.464 CD8_Naive L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 7.64e-01 0.0289 0.0962 0.456 CD8_TCM L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 2.78e-01 -0.0957 0.088 0.456 CD8_TCM L2
ENSG00000134644 PUM1 -332032 sc-eQTL 6.92e-01 0.0329 0.0829 0.456 CD8_TCM L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 3.45e-01 0.082 0.0866 0.456 CD8_TCM L2
ENSG00000162517 PEF1 -910937 sc-eQTL 5.21e-01 -0.057 0.0886 0.456 CD8_TCM L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 5.02e-01 -0.054 0.0803 0.456 CD8_TCM L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 7.72e-01 0.0236 0.0812 0.456 CD8_TCM L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 6.53e-01 -0.041 0.091 0.463 CD8_TEM L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 9.18e-01 -0.00902 0.0873 0.463 CD8_TEM L2
ENSG00000134644 PUM1 -332032 sc-eQTL 7.33e-01 -0.0305 0.0892 0.463 CD8_TEM L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 6.67e-01 0.0361 0.0839 0.463 CD8_TEM L2
ENSG00000162517 PEF1 -910937 sc-eQTL 4.40e-01 -0.061 0.0789 0.463 CD8_TEM L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 3.87e-01 -0.0754 0.0869 0.463 CD8_TEM L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 1.00e-01 -0.129 0.0783 0.463 CD8_TEM L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 3.66e-01 -0.0837 0.0924 0.461 MAIT L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 5.09e-01 0.0542 0.0819 0.461 MAIT L2
ENSG00000134644 PUM1 -332032 sc-eQTL 9.18e-01 0.00809 0.0786 0.461 MAIT L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 2.17e-01 0.0914 0.0739 0.461 MAIT L2
ENSG00000162517 PEF1 -910937 sc-eQTL 6.46e-01 0.0374 0.0815 0.461 MAIT L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 9.70e-01 0.00309 0.0826 0.461 MAIT L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 7.75e-01 0.0244 0.0851 0.461 MAIT L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 5.77e-01 0.052 0.0931 0.462 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 3.85e-01 -0.0685 0.0786 0.462 NK_CD56bright L2
ENSG00000134644 PUM1 -332032 sc-eQTL 7.18e-01 -0.0299 0.0827 0.462 NK_CD56bright L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.05e-01 0.0545 0.0815 0.462 NK_CD56bright L2
ENSG00000162517 PEF1 -910937 sc-eQTL 8.45e-01 -0.0155 0.0792 0.462 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 9.54e-01 -0.00471 0.082 0.462 NK_CD56bright L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 9.56e-01 -0.0045 0.0808 0.462 NK_CD56bright L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 5.82e-01 -0.0493 0.0893 0.466 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 4.29e-01 0.0523 0.066 0.466 NK_CD56dim L2
ENSG00000134644 PUM1 -332032 sc-eQTL 9.55e-01 -0.00381 0.0678 0.466 NK_CD56dim L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 7.27e-02 0.129 0.0717 0.466 NK_CD56dim L2
ENSG00000162517 PEF1 -910937 sc-eQTL 9.90e-01 0.000821 0.0643 0.466 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 5.16e-01 -0.0588 0.0905 0.466 NK_CD56dim L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 3.14e-01 0.0752 0.0745 0.466 NK_CD56dim L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 9.23e-01 -0.00899 0.0927 0.466 NK_HLA L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 8.33e-01 -0.0175 0.0828 0.466 NK_HLA L2
ENSG00000134644 PUM1 -332032 sc-eQTL 3.40e-01 0.077 0.0805 0.466 NK_HLA L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 1.66e-02 0.183 0.0759 0.466 NK_HLA L2
ENSG00000162517 PEF1 -910937 sc-eQTL 2.22e-01 -0.106 0.0865 0.466 NK_HLA L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 6.49e-01 0.0374 0.0819 0.466 NK_HLA L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 5.76e-01 -0.0443 0.0792 0.466 NK_HLA L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 6.78e-01 0.036 0.0864 0.466 NK_cytokine L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.13e-01 0.0342 0.0674 0.466 NK_cytokine L2
ENSG00000134644 PUM1 -332032 sc-eQTL 4.79e-01 0.0516 0.0729 0.466 NK_cytokine L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 6.79e-02 0.146 0.0797 0.466 NK_cytokine L2
ENSG00000162517 PEF1 -910937 sc-eQTL 7.51e-01 -0.0218 0.0684 0.466 NK_cytokine L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 6.33e-01 -0.0407 0.0851 0.466 NK_cytokine L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 8.49e-01 0.0151 0.0792 0.466 NK_cytokine L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 1.44e-02 -0.265 0.107 0.459 PB L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 4.07e-01 0.105 0.127 0.459 PB L2
ENSG00000134644 PUM1 -332032 sc-eQTL 7.69e-01 0.0324 0.11 0.459 PB L2
ENSG00000162510 MATN1 10374 sc-eQTL 9.79e-01 -0.00269 0.103 0.459 PB L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 9.47e-01 -0.00487 0.0734 0.459 PB L2
ENSG00000162517 PEF1 -910937 sc-eQTL 3.31e-01 0.11 0.113 0.459 PB L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 9.22e-01 -0.00984 0.101 0.459 PB L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 9.68e-01 -0.00426 0.107 0.459 PB L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 3.21e-01 -0.0667 0.0671 0.461 Pro_T L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 1.48e-01 -0.123 0.0849 0.461 Pro_T L2
ENSG00000134644 PUM1 -332032 sc-eQTL 7.42e-01 0.0262 0.0796 0.461 Pro_T L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 1.63e-02 0.136 0.0563 0.461 Pro_T L2
ENSG00000162517 PEF1 -910937 sc-eQTL 8.18e-01 -0.0193 0.0838 0.461 Pro_T L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 6.56e-01 0.0356 0.0798 0.461 Pro_T L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 6.56e-01 0.0328 0.0734 0.461 Pro_T L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 8.01e-01 0.0227 0.0898 0.464 Treg L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 1.99e-01 0.111 0.0866 0.464 Treg L2
ENSG00000134644 PUM1 -332032 sc-eQTL 6.85e-01 -0.0282 0.0695 0.464 Treg L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 2.93e-01 0.0838 0.0794 0.464 Treg L2
ENSG00000162517 PEF1 -910937 sc-eQTL 1.19e-01 -0.134 0.0855 0.464 Treg L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 9.19e-01 0.00828 0.0812 0.464 Treg L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 4.29e-01 -0.0642 0.0809 0.464 Treg L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 1.58e-01 -0.127 0.0895 0.461 cDC L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.28e-01 -0.0473 0.0973 0.461 cDC L2
ENSG00000134644 PUM1 -332032 sc-eQTL 2.04e-01 0.106 0.0833 0.461 cDC L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.89e-01 -0.0317 0.0586 0.461 cDC L2
ENSG00000162517 PEF1 -910937 sc-eQTL 8.58e-01 -0.0152 0.0849 0.461 cDC L2
ENSG00000168528 SERINC2 -675606 sc-eQTL 6.87e-01 -0.0304 0.0753 0.461 cDC L2
ENSG00000284543 LINC01226 -772267 sc-eQTL 9.75e-01 -0.00234 0.074 0.461 cDC L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 1.77e-01 -0.107 0.0792 0.461 cDC L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 1.59e-01 -0.102 0.0725 0.464 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.56e-01 0.0362 0.0812 0.464 cMono_IL1B L2
ENSG00000134644 PUM1 -332032 sc-eQTL 3.62e-01 -0.0502 0.0549 0.464 cMono_IL1B L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 7.10e-01 0.0179 0.0483 0.464 cMono_IL1B L2
ENSG00000162512 SDC3 -174799 sc-eQTL 6.00e-01 -0.0477 0.0909 0.464 cMono_IL1B L2
ENSG00000162517 PEF1 -910937 sc-eQTL 3.91e-01 0.0637 0.0742 0.464 cMono_IL1B L2
ENSG00000168528 SERINC2 -675606 sc-eQTL 7.90e-01 0.0246 0.092 0.464 cMono_IL1B L2
ENSG00000284543 LINC01226 -772267 sc-eQTL 4.21e-01 0.0656 0.0812 0.464 cMono_IL1B L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 9.38e-02 0.127 0.0754 0.464 cMono_IL1B L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 3.52e-01 0.0706 0.0758 0.464 cMono_S100A L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.81e-01 0.037 0.0897 0.464 cMono_S100A L2
ENSG00000134644 PUM1 -332032 sc-eQTL 9.05e-01 0.00779 0.0648 0.464 cMono_S100A L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 3.34e-02 -0.106 0.0493 0.464 cMono_S100A L2
ENSG00000162512 SDC3 -174799 sc-eQTL 1.84e-01 -0.114 0.0857 0.464 cMono_S100A L2
ENSG00000162517 PEF1 -910937 sc-eQTL 4.43e-01 -0.0597 0.0776 0.464 cMono_S100A L2
ENSG00000168528 SERINC2 -675606 sc-eQTL 7.36e-01 -0.0308 0.0911 0.464 cMono_S100A L2
ENSG00000284543 LINC01226 -772267 sc-eQTL 8.95e-01 0.00975 0.074 0.464 cMono_S100A L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 6.81e-01 -0.0306 0.0743 0.464 cMono_S100A L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 7.33e-01 0.0386 0.113 0.458 gdT L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 3.41e-01 0.0923 0.0966 0.458 gdT L2
ENSG00000134644 PUM1 -332032 sc-eQTL 8.48e-01 0.0192 0.0999 0.458 gdT L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 2.07e-01 0.137 0.108 0.458 gdT L2
ENSG00000162517 PEF1 -910937 sc-eQTL 8.59e-02 0.17 0.0983 0.458 gdT L2
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 6.84e-01 -0.0409 0.1 0.458 gdT L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 8.90e-01 -0.0135 0.0971 0.458 gdT L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 9.54e-01 -0.00494 0.0858 0.46 intMono L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 7.39e-01 0.0308 0.0922 0.46 intMono L2
ENSG00000134644 PUM1 -332032 sc-eQTL 6.26e-02 -0.145 0.0776 0.46 intMono L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 3.49e-02 0.129 0.0607 0.46 intMono L2
ENSG00000162512 SDC3 -174799 sc-eQTL 1.94e-01 -0.109 0.0837 0.46 intMono L2
ENSG00000162517 PEF1 -910937 sc-eQTL 3.55e-01 -0.0818 0.0882 0.46 intMono L2
ENSG00000168528 SERINC2 -675606 sc-eQTL 7.13e-01 0.0324 0.088 0.46 intMono L2
ENSG00000284543 LINC01226 -772267 sc-eQTL 2.06e-01 0.105 0.0831 0.46 intMono L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 8.42e-01 -0.0167 0.0834 0.46 intMono L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 2.00e-01 0.103 0.0802 0.457 ncMono L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.02e-01 -0.0448 0.0858 0.457 ncMono L2
ENSG00000134644 PUM1 -332032 sc-eQTL 3.63e-01 -0.0638 0.07 0.457 ncMono L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.47e-01 0.0384 0.0637 0.457 ncMono L2
ENSG00000162512 SDC3 -174799 sc-eQTL 4.90e-01 -0.0493 0.0714 0.457 ncMono L2
ENSG00000162517 PEF1 -910937 sc-eQTL 1.16e-02 -0.205 0.0806 0.457 ncMono L2
ENSG00000168528 SERINC2 -675606 sc-eQTL 8.81e-01 0.0117 0.078 0.457 ncMono L2
ENSG00000284543 LINC01226 -772267 sc-eQTL 8.40e-01 -0.0157 0.0779 0.457 ncMono L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 4.33e-01 0.0634 0.0807 0.457 ncMono L2
ENSG00000060688 SNRNP40 -562829 sc-eQTL 5.74e-01 -0.0495 0.0878 0.446 pDC L2
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 2.99e-02 0.208 0.095 0.446 pDC L2
ENSG00000134644 PUM1 -332032 sc-eQTL 1.20e-01 -0.124 0.0794 0.446 pDC L2
ENSG00000162511 LAPTM5 -23815 sc-eQTL 8.20e-01 0.017 0.0744 0.446 pDC L2
ENSG00000162517 PEF1 -910937 sc-eQTL 6.44e-01 -0.0446 0.0964 0.446 pDC L2
ENSG00000168528 SERINC2 -675606 sc-eQTL 8.11e-01 -0.0216 0.0902 0.446 pDC L2
ENSG00000284543 LINC01226 -772267 sc-eQTL 7.53e-01 0.0221 0.07 0.446 pDC L2
ENSG00000287510 AL137857.1 2266 sc-eQTL 6.51e-01 0.0373 0.0823 0.446 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -562829 sc-eQTL 2.70e-01 -0.0997 0.0902 0.464 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 8.05e-01 -0.0186 0.0753 0.464 B_Memory LOneK1K
ENSG00000134644 PUM1 -332032 sc-eQTL 5.43e-01 0.0406 0.0667 0.464 B_Memory LOneK1K
ENSG00000162510 MATN1 10374 sc-eQTL 1.35e-01 0.113 0.0757 0.464 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.40e-01 0.0293 0.0478 0.464 B_Memory LOneK1K
ENSG00000162517 PEF1 -910937 sc-eQTL 1.31e-01 0.119 0.0788 0.464 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 3.62e-01 -0.0577 0.0631 0.464 B_Memory LOneK1K
ENSG00000287510 AL137857.1 2266 sc-eQTL 2.08e-01 -0.0867 0.0687 0.464 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -562829 sc-eQTL 1.47e-02 -0.197 0.0802 0.464 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 3.70e-02 -0.134 0.0636 0.464 B_Naive LOneK1K
ENSG00000134644 PUM1 -332032 sc-eQTL 9.40e-01 -0.00461 0.0608 0.464 B_Naive LOneK1K
ENSG00000162510 MATN1 10374 sc-eQTL 4.92e-01 0.0403 0.0585 0.464 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -23815 sc-eQTL 7.85e-02 0.0723 0.0409 0.464 B_Naive LOneK1K
ENSG00000162517 PEF1 -910937 sc-eQTL 8.24e-01 0.0167 0.0753 0.464 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 7.04e-02 -0.0961 0.0528 0.464 B_Naive LOneK1K
ENSG00000287510 AL137857.1 2266 sc-eQTL 7.65e-01 -0.0189 0.0632 0.464 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -562829 sc-eQTL 5.83e-01 -0.038 0.0691 0.464 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 5.55e-01 0.0462 0.0782 0.464 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -332032 sc-eQTL 7.00e-01 -0.0192 0.0499 0.464 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -23815 sc-eQTL 5.43e-01 -0.0267 0.0439 0.464 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -174799 sc-eQTL 2.75e-01 -0.0977 0.0893 0.464 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -910937 sc-eQTL 6.67e-01 0.0272 0.063 0.464 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -675606 sc-eQTL 9.71e-01 -0.00335 0.0921 0.464 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -772267 sc-eQTL 7.36e-01 0.0255 0.0755 0.464 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 2266 sc-eQTL 3.95e-01 0.0602 0.0706 0.464 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -562829 sc-eQTL 2.07e-01 0.0962 0.0761 0.466 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 7.47e-01 0.027 0.0835 0.466 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -332032 sc-eQTL 2.40e-01 -0.0803 0.0682 0.466 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -23815 sc-eQTL 7.23e-02 0.0981 0.0543 0.466 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -174799 sc-eQTL 1.44e-01 -0.117 0.0795 0.466 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -910937 sc-eQTL 1.23e-02 -0.181 0.0716 0.466 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -675606 sc-eQTL 5.72e-01 0.0469 0.0829 0.466 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -772267 sc-eQTL 7.73e-01 0.0228 0.0787 0.466 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 2266 sc-eQTL 5.14e-01 0.0515 0.0787 0.466 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -562829 sc-eQTL 7.34e-01 -0.0288 0.0846 0.466 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -563023 sc-eQTL 6.25e-01 0.0283 0.0578 0.466 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -332032 sc-eQTL 6.33e-01 0.0302 0.0633 0.466 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -23815 sc-eQTL 6.08e-02 0.132 0.0702 0.466 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -910937 sc-eQTL 6.52e-01 -0.0243 0.0538 0.466 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 15455 sc-eQTL 2.49e-01 -0.0941 0.0814 0.466 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 2266 sc-eQTL 4.26e-01 0.0561 0.0704 0.466 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -23815 eQTL 1.31e-08 0.0546 0.00951 0.0 0.0 0.451
ENSG00000162512 SDC3 -174799 eQTL 0.0343 -0.0504 0.0238 0.0 0.0 0.451
ENSG00000186056 MATN1-AS1 15455 eQTL 4.81e-09 -0.0707 0.012 0.0702 0.0636 0.451

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 \N -563023 2.74e-07 1.78e-07 5.03e-08 2.53e-07 9.8e-08 8.45e-08 1.61e-07 5.4e-08 1.45e-07 4.94e-08 1.63e-07 8.59e-08 1.45e-07 6.56e-08 6.04e-08 7.49e-08 3.98e-08 1.27e-07 7.39e-08 4.16e-08 1.21e-07 1.24e-07 1.58e-07 2.79e-08 1.63e-07 1.26e-07 1.06e-07 9.74e-08 1.09e-07 1.1e-07 9.7e-08 3.98e-08 3.89e-08 8.68e-08 3.12e-08 3.93e-08 5.45e-08 9.61e-08 6.78e-08 3.8e-08 3.91e-08 1.52e-07 4.33e-08 5.71e-08 5.43e-08 1.89e-08 1.22e-07 1.93e-09 4.85e-08
ENSG00000162511 LAPTM5 -23815 2.1e-05 2.56e-05 3.02e-06 1.21e-05 2.33e-06 8.94e-06 2.37e-05 3.08e-06 1.92e-05 7.94e-06 2.52e-05 7.82e-06 3.11e-05 7.61e-06 4.35e-06 1.01e-05 8.74e-06 1.37e-05 4.18e-06 4.15e-06 7.95e-06 1.71e-05 1.9e-05 4.82e-06 2.78e-05 5.19e-06 8.01e-06 6.87e-06 2.03e-05 1.63e-05 1.24e-05 1e-06 1.22e-06 3.74e-06 1.01e-05 3.76e-06 1.74e-06 2.02e-06 1.96e-06 1.89e-06 9.34e-07 2.6e-05 2.68e-06 2.62e-07 1.43e-06 2.35e-06 2.12e-06 9.75e-07 1.32e-06
ENSG00000186056 MATN1-AS1 15455 3.81e-05 3.29e-05 5.07e-06 1.36e-05 3.33e-06 1.37e-05 3.78e-05 3.72e-06 2.6e-05 1.09e-05 3.44e-05 1.14e-05 4.12e-05 1.1e-05 5.37e-06 1.37e-05 1.34e-05 2.03e-05 6.31e-06 5.32e-06 1.08e-05 2.62e-05 2.94e-05 6.97e-06 3.6e-05 5.98e-06 1.05e-05 9e-06 3.05e-05 2.35e-05 1.63e-05 1.33e-06 1.46e-06 4.85e-06 1.15e-05 4.5e-06 1.85e-06 2.69e-06 2.99e-06 2.6e-06 1.44e-06 3.78e-05 2.99e-06 2.69e-07 2.1e-06 2.74e-06 3.43e-06 1.3e-06 1.59e-06