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Genes within 1Mb (chr1:30729070:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -567718 sc-eQTL 8.95e-01 -0.0101 0.0768 0.451 B L1
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 1.53e-01 -0.0877 0.0612 0.451 B L1
ENSG00000134644 PUM1 -336921 sc-eQTL 5.00e-01 0.0348 0.0515 0.451 B L1
ENSG00000162510 MATN1 5485 sc-eQTL 2.59e-02 -0.12 0.0536 0.451 B L1
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.05e-01 0.0538 0.0423 0.451 B L1
ENSG00000162517 PEF1 -915826 sc-eQTL 7.00e-01 -0.0247 0.0641 0.451 B L1
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 8.57e-01 -0.00899 0.0498 0.451 B L1
ENSG00000287510 AL137857.1 -2623 sc-eQTL 3.96e-01 0.05 0.0588 0.451 B L1
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.82e-01 -0.0881 0.0658 0.451 CD4T L1
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.34e-01 -0.00429 0.0516 0.451 CD4T L1
ENSG00000134644 PUM1 -336921 sc-eQTL 5.33e-01 0.0287 0.0459 0.451 CD4T L1
ENSG00000162511 LAPTM5 -28704 sc-eQTL 3.72e-03 0.146 0.0499 0.451 CD4T L1
ENSG00000162517 PEF1 -915826 sc-eQTL 3.99e-01 0.045 0.0531 0.451 CD4T L1
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 8.70e-01 -0.00749 0.0455 0.451 CD4T L1
ENSG00000287510 AL137857.1 -2623 sc-eQTL 1.42e-01 -0.0799 0.0543 0.451 CD4T L1
ENSG00000060688 SNRNP40 -567718 sc-eQTL 7.23e-01 -0.031 0.0873 0.451 CD8T L1
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.01e-02 -0.0983 0.0577 0.451 CD8T L1
ENSG00000134644 PUM1 -336921 sc-eQTL 3.75e-02 0.106 0.0507 0.451 CD8T L1
ENSG00000162511 LAPTM5 -28704 sc-eQTL 7.91e-03 0.131 0.0489 0.451 CD8T L1
ENSG00000162517 PEF1 -915826 sc-eQTL 5.90e-01 0.033 0.0612 0.451 CD8T L1
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 8.26e-01 0.0128 0.0582 0.451 CD8T L1
ENSG00000287510 AL137857.1 -2623 sc-eQTL 6.61e-01 0.0321 0.0732 0.451 CD8T L1
ENSG00000060688 SNRNP40 -567718 sc-eQTL 3.97e-01 -0.0658 0.0775 0.459 DC L1
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 3.49e-01 -0.0862 0.0917 0.459 DC L1
ENSG00000134644 PUM1 -336921 sc-eQTL 6.48e-01 -0.0329 0.072 0.459 DC L1
ENSG00000162511 LAPTM5 -28704 sc-eQTL 5.64e-02 0.0978 0.051 0.459 DC L1
ENSG00000162517 PEF1 -915826 sc-eQTL 7.49e-01 0.0267 0.0834 0.459 DC L1
ENSG00000168528 SERINC2 -680495 sc-eQTL 7.69e-01 0.025 0.0848 0.459 DC L1
ENSG00000284543 LINC01226 -777156 sc-eQTL 6.88e-01 0.0226 0.0562 0.459 DC L1
ENSG00000287510 AL137857.1 -2623 sc-eQTL 8.95e-01 0.0107 0.0813 0.459 DC L1
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.42e-01 0.0872 0.0591 0.451 Mono L1
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 6.26e-01 -0.036 0.0736 0.451 Mono L1
ENSG00000134644 PUM1 -336921 sc-eQTL 3.63e-01 0.043 0.0471 0.451 Mono L1
ENSG00000162511 LAPTM5 -28704 sc-eQTL 4.50e-01 -0.0328 0.0434 0.451 Mono L1
ENSG00000162512 SDC3 -179688 sc-eQTL 1.62e-01 -0.117 0.0831 0.451 Mono L1
ENSG00000162517 PEF1 -915826 sc-eQTL 3.72e-01 -0.0523 0.0585 0.451 Mono L1
ENSG00000168528 SERINC2 -680495 sc-eQTL 7.80e-01 -0.025 0.0896 0.451 Mono L1
ENSG00000284543 LINC01226 -777156 sc-eQTL 2.81e-01 -0.0851 0.0787 0.451 Mono L1
ENSG00000287510 AL137857.1 -2623 sc-eQTL 3.97e-01 0.0584 0.0689 0.451 Mono L1
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.53e-03 0.259 0.0807 0.451 NK L1
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 4.97e-02 -0.111 0.0561 0.451 NK L1
ENSG00000134644 PUM1 -336921 sc-eQTL 4.87e-01 0.0413 0.0593 0.451 NK L1
ENSG00000162511 LAPTM5 -28704 sc-eQTL 4.56e-04 0.236 0.0663 0.451 NK L1
ENSG00000162517 PEF1 -915826 sc-eQTL 3.55e-01 0.0461 0.0498 0.451 NK L1
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 9.74e-01 0.00254 0.0768 0.451 NK L1
ENSG00000287510 AL137857.1 -2623 sc-eQTL 3.92e-02 0.146 0.0702 0.451 NK L1
ENSG00000060688 SNRNP40 -567718 sc-eQTL 7.85e-02 0.109 0.0617 0.451 Other_T L1
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 3.30e-01 -0.0648 0.0663 0.451 Other_T L1
ENSG00000134644 PUM1 -336921 sc-eQTL 4.20e-02 -0.121 0.0592 0.451 Other_T L1
ENSG00000162511 LAPTM5 -28704 sc-eQTL 6.43e-03 0.132 0.0481 0.451 Other_T L1
ENSG00000162517 PEF1 -915826 sc-eQTL 8.43e-01 -0.013 0.0654 0.451 Other_T L1
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 8.18e-01 0.0185 0.0802 0.451 Other_T L1
ENSG00000287510 AL137857.1 -2623 sc-eQTL 6.35e-01 -0.0397 0.0835 0.451 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -567718 sc-eQTL 6.80e-01 0.0418 0.101 0.449 B_Activated L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 6.04e-01 0.0531 0.102 0.449 B_Activated L2
ENSG00000134644 PUM1 -336921 sc-eQTL 7.87e-01 -0.0256 0.0949 0.449 B_Activated L2
ENSG00000162510 MATN1 5485 sc-eQTL 9.03e-01 -0.0101 0.0829 0.449 B_Activated L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 7.39e-01 0.0193 0.0578 0.449 B_Activated L2
ENSG00000162517 PEF1 -915826 sc-eQTL 5.91e-01 0.0529 0.0983 0.449 B_Activated L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 3.75e-01 0.0829 0.0931 0.449 B_Activated L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 1.93e-01 -0.107 0.0822 0.449 B_Activated L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 4.93e-01 -0.0638 0.0929 0.451 B_Intermediate L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.84e-01 0.00152 0.0775 0.451 B_Intermediate L2
ENSG00000134644 PUM1 -336921 sc-eQTL 5.20e-01 0.047 0.073 0.451 B_Intermediate L2
ENSG00000162510 MATN1 5485 sc-eQTL 8.65e-01 -0.0129 0.0761 0.451 B_Intermediate L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 9.11e-02 0.0787 0.0464 0.451 B_Intermediate L2
ENSG00000162517 PEF1 -915826 sc-eQTL 7.04e-01 -0.033 0.0867 0.451 B_Intermediate L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 5.30e-01 0.0412 0.0655 0.451 B_Intermediate L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 3.15e-01 0.0737 0.0732 0.451 B_Intermediate L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 4.77e-01 0.0649 0.0912 0.45 B_Memory L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 4.84e-01 -0.059 0.084 0.45 B_Memory L2
ENSG00000134644 PUM1 -336921 sc-eQTL 9.63e-01 -0.00339 0.0732 0.45 B_Memory L2
ENSG00000162510 MATN1 5485 sc-eQTL 2.39e-01 -0.0825 0.0698 0.45 B_Memory L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 7.29e-01 -0.0216 0.0621 0.45 B_Memory L2
ENSG00000162517 PEF1 -915826 sc-eQTL 4.91e-01 0.0571 0.0828 0.45 B_Memory L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 8.62e-01 -0.0123 0.071 0.45 B_Memory L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 5.42e-01 0.0508 0.0831 0.45 B_Memory L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 3.04e-01 0.0863 0.0838 0.451 B_Naive1 L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.70e-01 0.0027 0.0726 0.451 B_Naive1 L2
ENSG00000134644 PUM1 -336921 sc-eQTL 7.44e-02 0.114 0.0635 0.451 B_Naive1 L2
ENSG00000162510 MATN1 5485 sc-eQTL 2.53e-02 -0.145 0.0642 0.451 B_Naive1 L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 1.98e-01 0.0558 0.0432 0.451 B_Naive1 L2
ENSG00000162517 PEF1 -915826 sc-eQTL 9.68e-01 0.00311 0.0765 0.451 B_Naive1 L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 7.20e-01 -0.0205 0.057 0.451 B_Naive1 L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 2.24e-02 0.16 0.0695 0.451 B_Naive1 L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 2.06e-02 -0.203 0.087 0.451 B_Naive2 L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 1.38e-03 -0.23 0.0709 0.451 B_Naive2 L2
ENSG00000134644 PUM1 -336921 sc-eQTL 2.46e-01 -0.0826 0.0709 0.451 B_Naive2 L2
ENSG00000162510 MATN1 5485 sc-eQTL 5.60e-02 -0.13 0.0677 0.451 B_Naive2 L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 4.42e-01 0.0357 0.0463 0.451 B_Naive2 L2
ENSG00000162517 PEF1 -915826 sc-eQTL 4.49e-01 -0.0639 0.0843 0.451 B_Naive2 L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 9.98e-01 0.000206 0.0675 0.451 B_Naive2 L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 2.92e-01 -0.0769 0.0728 0.451 B_Naive2 L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 6.62e-01 0.0384 0.0877 0.452 CD4_CTL L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 4.92e-01 -0.0593 0.0862 0.452 CD4_CTL L2
ENSG00000134644 PUM1 -336921 sc-eQTL 8.72e-01 0.0136 0.0846 0.452 CD4_CTL L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.75e-01 0.0823 0.0752 0.452 CD4_CTL L2
ENSG00000162517 PEF1 -915826 sc-eQTL 7.53e-01 -0.0243 0.0773 0.452 CD4_CTL L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 3.38e-01 0.0791 0.0823 0.452 CD4_CTL L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 1.48e-01 -0.105 0.0724 0.452 CD4_CTL L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 4.67e-02 -0.138 0.0689 0.451 CD4_Naive L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.41e-01 -0.00456 0.0616 0.451 CD4_Naive L2
ENSG00000134644 PUM1 -336921 sc-eQTL 7.76e-01 0.0141 0.0492 0.451 CD4_Naive L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 7.29e-03 0.14 0.0518 0.451 CD4_Naive L2
ENSG00000162517 PEF1 -915826 sc-eQTL 8.25e-01 -0.0128 0.0578 0.451 CD4_Naive L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 3.17e-01 -0.0536 0.0534 0.451 CD4_Naive L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 8.50e-01 -0.0116 0.0615 0.451 CD4_Naive L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 6.54e-01 -0.0389 0.0865 0.451 CD4_TCM L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.57e-01 -0.0216 0.0698 0.451 CD4_TCM L2
ENSG00000134644 PUM1 -336921 sc-eQTL 1.18e-01 0.0965 0.0614 0.451 CD4_TCM L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 1.14e-04 0.195 0.0495 0.451 CD4_TCM L2
ENSG00000162517 PEF1 -915826 sc-eQTL 3.37e-01 0.066 0.0685 0.451 CD4_TCM L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 7.80e-01 0.0182 0.065 0.451 CD4_TCM L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 5.56e-01 -0.0427 0.0724 0.451 CD4_TCM L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 6.64e-01 -0.0377 0.0866 0.451 CD4_TEM L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.05e-01 0.00989 0.0826 0.451 CD4_TEM L2
ENSG00000134644 PUM1 -336921 sc-eQTL 1.15e-01 0.108 0.0684 0.451 CD4_TEM L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.96e-03 0.205 0.0681 0.451 CD4_TEM L2
ENSG00000162517 PEF1 -915826 sc-eQTL 7.51e-01 0.0248 0.0779 0.451 CD4_TEM L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 7.54e-01 0.0255 0.0814 0.451 CD4_TEM L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 1.24e-01 -0.123 0.0797 0.451 CD4_TEM L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 2.21e-01 -0.114 0.0932 0.451 CD8_CTL L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 4.36e-02 -0.144 0.071 0.451 CD8_CTL L2
ENSG00000134644 PUM1 -336921 sc-eQTL 2.14e-02 0.159 0.0688 0.451 CD8_CTL L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 1.48e-01 0.111 0.0767 0.451 CD8_CTL L2
ENSG00000162517 PEF1 -915826 sc-eQTL 4.41e-01 0.0517 0.0671 0.451 CD8_CTL L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 2.43e-01 -0.0947 0.0808 0.451 CD8_CTL L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 6.21e-01 0.0378 0.0762 0.451 CD8_CTL L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 8.95e-01 -0.0115 0.0866 0.451 CD8_Naive L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.28e-01 -0.026 0.0746 0.451 CD8_Naive L2
ENSG00000134644 PUM1 -336921 sc-eQTL 3.64e-01 0.0545 0.06 0.451 CD8_Naive L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.90e-04 0.206 0.0558 0.451 CD8_Naive L2
ENSG00000162517 PEF1 -915826 sc-eQTL 8.07e-01 -0.0195 0.08 0.451 CD8_Naive L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 5.51e-01 0.0428 0.0718 0.451 CD8_Naive L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 9.53e-01 0.00463 0.0782 0.451 CD8_Naive L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 9.59e-01 -0.00503 0.0973 0.454 CD8_TCM L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.33e-01 0.0075 0.0892 0.454 CD8_TCM L2
ENSG00000134644 PUM1 -336921 sc-eQTL 4.72e-01 0.0603 0.0837 0.454 CD8_TCM L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 1.71e-01 0.12 0.0873 0.454 CD8_TCM L2
ENSG00000162517 PEF1 -915826 sc-eQTL 7.59e-01 -0.0276 0.0897 0.454 CD8_TCM L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 4.06e-01 -0.0676 0.0811 0.454 CD8_TCM L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 7.81e-01 0.0229 0.0821 0.454 CD8_TCM L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.04e-01 0.15 0.0916 0.45 CD8_TEM L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.20e-01 0.0317 0.0884 0.45 CD8_TEM L2
ENSG00000134644 PUM1 -336921 sc-eQTL 9.10e-01 -0.0102 0.0904 0.45 CD8_TEM L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 6.19e-01 0.0423 0.0849 0.45 CD8_TEM L2
ENSG00000162517 PEF1 -915826 sc-eQTL 9.67e-01 0.00334 0.08 0.45 CD8_TEM L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 4.01e-01 -0.0742 0.088 0.45 CD8_TEM L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 9.21e-01 -0.00795 0.0798 0.45 CD8_TEM L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 2.30e-01 0.109 0.0907 0.452 MAIT L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 3.74e-01 0.0717 0.0805 0.452 MAIT L2
ENSG00000134644 PUM1 -336921 sc-eQTL 4.30e-01 -0.061 0.0772 0.452 MAIT L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 1.93e-03 0.224 0.0713 0.452 MAIT L2
ENSG00000162517 PEF1 -915826 sc-eQTL 9.34e-01 0.0066 0.0801 0.452 MAIT L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 9.60e-01 0.00404 0.0812 0.452 MAIT L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 2.15e-01 -0.104 0.0834 0.452 MAIT L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.66e-01 0.13 0.0933 0.458 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 1.34e-02 -0.195 0.078 0.458 NK_CD56bright L2
ENSG00000134644 PUM1 -336921 sc-eQTL 6.43e-01 0.0385 0.0831 0.458 NK_CD56bright L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.92e-02 0.178 0.0811 0.458 NK_CD56bright L2
ENSG00000162517 PEF1 -915826 sc-eQTL 5.67e-01 -0.0457 0.0796 0.458 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 3.46e-01 -0.0777 0.0822 0.458 NK_CD56bright L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 5.49e-01 0.0488 0.0811 0.458 NK_CD56bright L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.19e-01 0.136 0.0871 0.453 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 1.70e-01 -0.0888 0.0645 0.453 NK_CD56dim L2
ENSG00000134644 PUM1 -336921 sc-eQTL 5.69e-01 0.0378 0.0664 0.453 NK_CD56dim L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.63e-03 0.211 0.0694 0.453 NK_CD56dim L2
ENSG00000162517 PEF1 -915826 sc-eQTL 3.17e-01 0.0632 0.0629 0.453 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 6.25e-01 0.0435 0.0888 0.453 NK_CD56dim L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 4.97e-02 0.143 0.0726 0.453 NK_CD56dim L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 2.95e-01 0.0987 0.094 0.457 NK_HLA L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.59e-01 0.00433 0.0842 0.457 NK_HLA L2
ENSG00000134644 PUM1 -336921 sc-eQTL 1.68e-01 -0.113 0.0816 0.457 NK_HLA L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.00e-03 0.239 0.0764 0.457 NK_HLA L2
ENSG00000162517 PEF1 -915826 sc-eQTL 2.64e-01 -0.0985 0.0879 0.457 NK_HLA L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 6.74e-01 -0.0351 0.0832 0.457 NK_HLA L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 5.12e-03 0.223 0.0789 0.457 NK_HLA L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 3.23e-02 0.183 0.085 0.453 NK_cytokine L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 6.02e-01 -0.035 0.067 0.453 NK_cytokine L2
ENSG00000134644 PUM1 -336921 sc-eQTL 3.33e-01 0.0702 0.0724 0.453 NK_cytokine L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.08e-02 0.184 0.0788 0.453 NK_cytokine L2
ENSG00000162517 PEF1 -915826 sc-eQTL 4.33e-01 0.0534 0.0679 0.453 NK_cytokine L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 3.74e-01 0.0752 0.0845 0.453 NK_cytokine L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 4.72e-01 0.0567 0.0786 0.453 NK_cytokine L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 4.41e-01 0.0788 0.102 0.433 PB L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.25e-01 -0.0419 0.119 0.433 PB L2
ENSG00000134644 PUM1 -336921 sc-eQTL 6.52e-01 -0.0465 0.103 0.433 PB L2
ENSG00000162510 MATN1 5485 sc-eQTL 7.92e-01 -0.0254 0.0961 0.433 PB L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 6.54e-01 0.0308 0.0686 0.433 PB L2
ENSG00000162517 PEF1 -915826 sc-eQTL 7.02e-01 -0.0405 0.106 0.433 PB L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 2.53e-01 0.107 0.0934 0.433 PB L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 6.59e-01 -0.0442 0.0999 0.433 PB L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 8.49e-01 -0.013 0.0678 0.448 Pro_T L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.08e-03 -0.23 0.0846 0.448 Pro_T L2
ENSG00000134644 PUM1 -336921 sc-eQTL 8.07e-01 -0.0196 0.0803 0.448 Pro_T L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 9.23e-01 0.00561 0.0576 0.448 Pro_T L2
ENSG00000162517 PEF1 -915826 sc-eQTL 1.30e-02 -0.209 0.0833 0.448 Pro_T L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 8.76e-01 0.0126 0.0805 0.448 Pro_T L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 5.13e-01 -0.0485 0.074 0.448 Pro_T L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.19e-01 0.138 0.0881 0.451 Treg L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 6.91e-02 0.155 0.0851 0.451 Treg L2
ENSG00000134644 PUM1 -336921 sc-eQTL 8.65e-01 -0.0117 0.0686 0.451 Treg L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 7.88e-03 0.207 0.0773 0.451 Treg L2
ENSG00000162517 PEF1 -915826 sc-eQTL 8.21e-01 -0.0192 0.0849 0.451 Treg L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 4.03e-01 0.067 0.0799 0.451 Treg L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 8.79e-01 -0.0122 0.08 0.451 Treg L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 7.82e-01 0.0248 0.0895 0.468 cDC L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 6.33e-01 -0.0464 0.0969 0.468 cDC L2
ENSG00000134644 PUM1 -336921 sc-eQTL 7.93e-01 -0.0219 0.0833 0.468 cDC L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 6.83e-02 0.106 0.0578 0.468 cDC L2
ENSG00000162517 PEF1 -915826 sc-eQTL 1.74e-01 0.115 0.0841 0.468 cDC L2
ENSG00000168528 SERINC2 -680495 sc-eQTL 2.95e-01 -0.0784 0.0747 0.468 cDC L2
ENSG00000284543 LINC01226 -777156 sc-eQTL 1.13e-01 0.117 0.0731 0.468 cDC L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 8.99e-01 0.01 0.0793 0.468 cDC L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 2.97e-01 0.0757 0.0724 0.451 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 5.65e-01 -0.0466 0.0809 0.451 cMono_IL1B L2
ENSG00000134644 PUM1 -336921 sc-eQTL 5.44e-01 0.0333 0.0547 0.451 cMono_IL1B L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 4.22e-01 -0.0386 0.048 0.451 cMono_IL1B L2
ENSG00000162512 SDC3 -179688 sc-eQTL 3.05e-01 -0.0928 0.0903 0.451 cMono_IL1B L2
ENSG00000162517 PEF1 -915826 sc-eQTL 9.87e-01 -0.00122 0.074 0.451 cMono_IL1B L2
ENSG00000168528 SERINC2 -680495 sc-eQTL 7.93e-01 0.024 0.0917 0.451 cMono_IL1B L2
ENSG00000284543 LINC01226 -777156 sc-eQTL 1.53e-01 -0.116 0.0807 0.451 cMono_IL1B L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 6.35e-01 0.036 0.0755 0.451 cMono_IL1B L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 8.03e-02 0.132 0.075 0.451 cMono_S100A L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 8.63e-01 0.0154 0.0892 0.451 cMono_S100A L2
ENSG00000134644 PUM1 -336921 sc-eQTL 8.88e-01 0.00905 0.0645 0.451 cMono_S100A L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 4.27e-01 -0.0394 0.0495 0.451 cMono_S100A L2
ENSG00000162512 SDC3 -179688 sc-eQTL 4.95e-01 0.0585 0.0855 0.451 cMono_S100A L2
ENSG00000162517 PEF1 -915826 sc-eQTL 1.14e-01 -0.122 0.0768 0.451 cMono_S100A L2
ENSG00000168528 SERINC2 -680495 sc-eQTL 9.24e-01 -0.00871 0.0906 0.451 cMono_S100A L2
ENSG00000284543 LINC01226 -777156 sc-eQTL 1.35e-01 -0.11 0.0732 0.451 cMono_S100A L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 8.43e-01 0.0146 0.0739 0.451 cMono_S100A L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 7.08e-01 -0.0421 0.112 0.452 gdT L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.64e-01 0.029 0.0962 0.452 gdT L2
ENSG00000134644 PUM1 -336921 sc-eQTL 7.40e-01 -0.033 0.0991 0.452 gdT L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 6.40e-01 0.0506 0.108 0.452 gdT L2
ENSG00000162517 PEF1 -915826 sc-eQTL 7.72e-01 0.0286 0.0986 0.452 gdT L2
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 9.40e-01 -0.00753 0.0995 0.452 gdT L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 2.65e-01 -0.107 0.0959 0.452 gdT L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.50e-01 0.122 0.0848 0.456 intMono L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.54e-01 -0.00528 0.0917 0.456 intMono L2
ENSG00000134644 PUM1 -336921 sc-eQTL 5.14e-01 -0.0508 0.0777 0.456 intMono L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.85e-01 0.0652 0.0608 0.456 intMono L2
ENSG00000162512 SDC3 -179688 sc-eQTL 1.29e-01 -0.127 0.0831 0.456 intMono L2
ENSG00000162517 PEF1 -915826 sc-eQTL 1.88e-01 0.115 0.0874 0.456 intMono L2
ENSG00000168528 SERINC2 -680495 sc-eQTL 5.42e-01 -0.0534 0.0874 0.456 intMono L2
ENSG00000284543 LINC01226 -777156 sc-eQTL 7.02e-01 0.0318 0.0828 0.456 intMono L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 8.18e-01 0.0191 0.0829 0.456 intMono L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 3.59e-01 0.0736 0.0801 0.455 ncMono L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 2.77e-01 0.093 0.0853 0.455 ncMono L2
ENSG00000134644 PUM1 -336921 sc-eQTL 3.84e-01 0.0609 0.0698 0.455 ncMono L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 6.46e-01 0.0292 0.0635 0.455 ncMono L2
ENSG00000162512 SDC3 -179688 sc-eQTL 3.02e-01 -0.0734 0.071 0.455 ncMono L2
ENSG00000162517 PEF1 -915826 sc-eQTL 3.82e-01 0.0714 0.0815 0.455 ncMono L2
ENSG00000168528 SERINC2 -680495 sc-eQTL 3.93e-01 0.0664 0.0776 0.455 ncMono L2
ENSG00000284543 LINC01226 -777156 sc-eQTL 7.76e-01 0.0221 0.0776 0.455 ncMono L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 4.02e-01 -0.0676 0.0804 0.455 ncMono L2
ENSG00000060688 SNRNP40 -567718 sc-eQTL 3.95e-01 -0.0755 0.0885 0.475 pDC L2
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 8.57e-01 -0.0176 0.0973 0.475 pDC L2
ENSG00000134644 PUM1 -336921 sc-eQTL 3.20e-01 0.0802 0.0804 0.475 pDC L2
ENSG00000162511 LAPTM5 -28704 sc-eQTL 8.66e-01 0.0127 0.075 0.475 pDC L2
ENSG00000162517 PEF1 -915826 sc-eQTL 7.70e-01 0.0285 0.0973 0.475 pDC L2
ENSG00000168528 SERINC2 -680495 sc-eQTL 5.42e-01 0.0556 0.0909 0.475 pDC L2
ENSG00000284543 LINC01226 -777156 sc-eQTL 4.43e-01 -0.0543 0.0705 0.475 pDC L2
ENSG00000287510 AL137857.1 -2623 sc-eQTL 5.65e-01 -0.0479 0.083 0.475 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -567718 sc-eQTL 8.64e-01 0.0152 0.0886 0.451 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.62e-01 -0.0224 0.0737 0.451 B_Memory LOneK1K
ENSG00000134644 PUM1 -336921 sc-eQTL 7.52e-01 0.0207 0.0653 0.451 B_Memory LOneK1K
ENSG00000162510 MATN1 5485 sc-eQTL 7.47e-01 -0.0241 0.0745 0.451 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -28704 sc-eQTL 1.63e-01 0.0653 0.0466 0.451 B_Memory LOneK1K
ENSG00000162517 PEF1 -915826 sc-eQTL 7.73e-01 -0.0224 0.0775 0.451 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 7.18e-01 0.0223 0.0619 0.451 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -2623 sc-eQTL 7.07e-01 0.0254 0.0674 0.451 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -567718 sc-eQTL 5.38e-01 -0.0502 0.0815 0.451 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 1.11e-01 -0.103 0.0641 0.451 B_Naive LOneK1K
ENSG00000134644 PUM1 -336921 sc-eQTL 4.34e-01 0.0477 0.0609 0.451 B_Naive LOneK1K
ENSG00000162510 MATN1 5485 sc-eQTL 1.57e-02 -0.141 0.0579 0.451 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.61e-01 0.0464 0.0412 0.451 B_Naive LOneK1K
ENSG00000162517 PEF1 -915826 sc-eQTL 5.57e-01 -0.0443 0.0754 0.451 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 6.49e-01 -0.0243 0.0534 0.451 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -2623 sc-eQTL 3.92e-01 0.0543 0.0633 0.451 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.15e-01 0.108 0.0681 0.451 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 7.65e-01 -0.0232 0.0776 0.451 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -336921 sc-eQTL 3.66e-01 0.0448 0.0494 0.451 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -28704 sc-eQTL 2.45e-01 -0.0505 0.0434 0.451 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -179688 sc-eQTL 6.70e-01 -0.0378 0.0887 0.451 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -915826 sc-eQTL 3.06e-01 -0.0638 0.0622 0.451 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -680495 sc-eQTL 9.82e-01 0.00205 0.0913 0.451 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -777156 sc-eQTL 1.21e-01 -0.116 0.0744 0.451 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -2623 sc-eQTL 4.78e-01 0.0498 0.07 0.451 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -567718 sc-eQTL 7.99e-02 0.131 0.0745 0.453 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 9.80e-01 0.00204 0.0821 0.453 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -336921 sc-eQTL 8.26e-01 -0.0148 0.0672 0.453 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -28704 sc-eQTL 7.18e-01 0.0195 0.0538 0.453 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -179688 sc-eQTL 3.06e-02 -0.169 0.0777 0.453 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -915826 sc-eQTL 7.81e-01 0.0199 0.0714 0.453 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -680495 sc-eQTL 6.88e-01 -0.0327 0.0815 0.453 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -777156 sc-eQTL 8.90e-01 0.0107 0.0773 0.453 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -2623 sc-eQTL 7.59e-01 0.0238 0.0774 0.453 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -567718 sc-eQTL 1.55e-03 0.26 0.0812 0.453 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -567912 sc-eQTL 2.26e-01 -0.0688 0.0566 0.453 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -336921 sc-eQTL 4.52e-01 0.0469 0.0621 0.453 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -28704 sc-eQTL 6.03e-04 0.236 0.0676 0.453 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -915826 sc-eQTL 2.56e-01 0.06 0.0527 0.453 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 10566 sc-eQTL 7.98e-01 0.0205 0.0802 0.453 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -2623 sc-eQTL 3.84e-02 0.143 0.0685 0.453 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -28704 eQTL 0.0311 -0.0209 0.0097 0.0 0.0 0.477
ENSG00000168528 SERINC2 -680495 eQTL 0.033 0.08 0.0375 0.0 0.0 0.477

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina