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Genes within 1Mb (chr1:30712704:TC:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -584084 sc-eQTL 3.92e-01 -0.0652 0.076 0.596 B L1
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.03e-01 -0.0628 0.0608 0.596 B L1
ENSG00000134644 PUM1 -353287 sc-eQTL 3.74e-01 0.0455 0.0511 0.596 B L1
ENSG00000162510 MATN1 -10881 sc-eQTL 5.78e-02 -0.102 0.0533 0.596 B L1
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.01e-01 0.0436 0.042 0.596 B L1
ENSG00000162517 PEF1 -932192 sc-eQTL 4.75e-01 0.0455 0.0635 0.596 B L1
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.03e-01 -0.0413 0.0493 0.596 B L1
ENSG00000287510 AL137857.1 -18989 sc-eQTL 5.47e-01 0.0352 0.0584 0.596 B L1
ENSG00000060688 SNRNP40 -584084 sc-eQTL 6.29e-01 0.0319 0.0659 0.596 CD4T L1
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 2.69e-01 0.0569 0.0514 0.596 CD4T L1
ENSG00000134644 PUM1 -353287 sc-eQTL 7.75e-01 -0.0132 0.0459 0.596 CD4T L1
ENSG00000162511 LAPTM5 -45070 sc-eQTL 9.29e-01 0.00455 0.0508 0.596 CD4T L1
ENSG00000162517 PEF1 -932192 sc-eQTL 7.73e-01 0.0153 0.0531 0.596 CD4T L1
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 9.27e-01 -0.00417 0.0455 0.596 CD4T L1
ENSG00000287510 AL137857.1 -18989 sc-eQTL 4.86e-01 -0.038 0.0544 0.596 CD4T L1
ENSG00000060688 SNRNP40 -584084 sc-eQTL 5.12e-01 0.0565 0.086 0.596 CD8T L1
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 9.99e-01 -5.67e-05 0.0573 0.596 CD8T L1
ENSG00000134644 PUM1 -353287 sc-eQTL 8.77e-01 -0.0078 0.0505 0.596 CD8T L1
ENSG00000162511 LAPTM5 -45070 sc-eQTL 9.06e-01 0.00581 0.049 0.596 CD8T L1
ENSG00000162517 PEF1 -932192 sc-eQTL 5.83e-01 -0.0332 0.0603 0.596 CD8T L1
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 5.01e-01 -0.0387 0.0574 0.596 CD8T L1
ENSG00000287510 AL137857.1 -18989 sc-eQTL 8.93e-01 -0.00974 0.0722 0.596 CD8T L1
ENSG00000060688 SNRNP40 -584084 sc-eQTL 2.66e-01 -0.0856 0.0768 0.595 DC L1
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.20e-01 0.0907 0.091 0.595 DC L1
ENSG00000134644 PUM1 -353287 sc-eQTL 3.73e-01 0.0637 0.0713 0.595 DC L1
ENSG00000162511 LAPTM5 -45070 sc-eQTL 9.25e-01 0.00481 0.051 0.595 DC L1
ENSG00000162517 PEF1 -932192 sc-eQTL 5.82e-01 -0.0456 0.0827 0.595 DC L1
ENSG00000168528 SERINC2 -696861 sc-eQTL 7.61e-01 -0.0256 0.0841 0.595 DC L1
ENSG00000284543 LINC01226 -793522 sc-eQTL 6.33e-01 0.0267 0.0557 0.595 DC L1
ENSG00000287510 AL137857.1 -18989 sc-eQTL 8.94e-02 -0.137 0.0801 0.595 DC L1
ENSG00000060688 SNRNP40 -584084 sc-eQTL 6.80e-01 0.0247 0.0598 0.596 Mono L1
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 5.61e-01 -0.0431 0.074 0.596 Mono L1
ENSG00000134644 PUM1 -353287 sc-eQTL 5.83e-01 0.0261 0.0475 0.596 Mono L1
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.85e-01 0.038 0.0436 0.596 Mono L1
ENSG00000162512 SDC3 -196054 sc-eQTL 1.52e-01 -0.12 0.0836 0.596 Mono L1
ENSG00000162517 PEF1 -932192 sc-eQTL 5.39e-01 -0.0362 0.0589 0.596 Mono L1
ENSG00000168528 SERINC2 -696861 sc-eQTL 4.51e-01 -0.068 0.09 0.596 Mono L1
ENSG00000284543 LINC01226 -793522 sc-eQTL 6.36e-01 0.0376 0.0793 0.596 Mono L1
ENSG00000287510 AL137857.1 -18989 sc-eQTL 9.98e-01 0.000186 0.0694 0.596 Mono L1
ENSG00000060688 SNRNP40 -584084 sc-eQTL 9.57e-01 0.0045 0.0837 0.597 NK L1
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.36e-01 -0.0551 0.0572 0.597 NK L1
ENSG00000134644 PUM1 -353287 sc-eQTL 2.37e-01 0.0711 0.0599 0.597 NK L1
ENSG00000162511 LAPTM5 -45070 sc-eQTL 1.90e-01 -0.0906 0.0689 0.597 NK L1
ENSG00000162517 PEF1 -932192 sc-eQTL 4.21e-01 -0.0407 0.0504 0.597 NK L1
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 6.75e-01 -0.0326 0.0777 0.597 NK L1
ENSG00000287510 AL137857.1 -18989 sc-eQTL 8.12e-01 0.0171 0.0718 0.597 NK L1
ENSG00000060688 SNRNP40 -584084 sc-eQTL 7.09e-01 -0.0233 0.0624 0.596 Other_T L1
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 8.41e-01 0.0134 0.0667 0.596 Other_T L1
ENSG00000134644 PUM1 -353287 sc-eQTL 4.43e-02 -0.12 0.0594 0.596 Other_T L1
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.23e-01 0.0486 0.049 0.596 Other_T L1
ENSG00000162517 PEF1 -932192 sc-eQTL 1.61e-01 0.092 0.0653 0.596 Other_T L1
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.45e-01 0.0615 0.0804 0.596 Other_T L1
ENSG00000287510 AL137857.1 -18989 sc-eQTL 5.97e-01 -0.0443 0.0838 0.596 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -584084 sc-eQTL 5.88e-01 0.0533 0.0981 0.61 B_Activated L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 4.64e-01 0.0725 0.0989 0.61 B_Activated L2
ENSG00000134644 PUM1 -353287 sc-eQTL 6.21e-01 0.0456 0.0919 0.61 B_Activated L2
ENSG00000162510 MATN1 -10881 sc-eQTL 2.26e-01 -0.0972 0.0801 0.61 B_Activated L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 9.31e-01 0.00486 0.0561 0.61 B_Activated L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.10e-02 0.178 0.0945 0.61 B_Activated L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.37e-01 0.0705 0.0904 0.61 B_Activated L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.83e-01 -0.086 0.0798 0.61 B_Activated L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 4.44e-01 0.0718 0.0936 0.594 B_Intermediate L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 8.61e-01 0.0137 0.0781 0.594 B_Intermediate L2
ENSG00000134644 PUM1 -353287 sc-eQTL 4.39e-01 0.0571 0.0736 0.594 B_Intermediate L2
ENSG00000162510 MATN1 -10881 sc-eQTL 3.33e-02 0.163 0.0759 0.594 B_Intermediate L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.90e-01 0.0405 0.047 0.594 B_Intermediate L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.93e-01 -0.0345 0.0874 0.594 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 7.15e-01 0.0241 0.0661 0.594 B_Intermediate L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 3.13e-01 -0.0747 0.0738 0.594 B_Intermediate L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 7.17e-01 0.0336 0.0925 0.599 B_Memory L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 4.85e-01 0.0596 0.0851 0.599 B_Memory L2
ENSG00000134644 PUM1 -353287 sc-eQTL 6.25e-01 0.0362 0.0741 0.599 B_Memory L2
ENSG00000162510 MATN1 -10881 sc-eQTL 9.40e-01 -0.00537 0.0709 0.599 B_Memory L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 1.07e-01 0.101 0.0625 0.599 B_Memory L2
ENSG00000162517 PEF1 -932192 sc-eQTL 7.59e-01 -0.0258 0.084 0.599 B_Memory L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 6.88e-01 0.0289 0.0719 0.599 B_Memory L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 6.12e-01 0.0428 0.0842 0.599 B_Memory L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 7.29e-01 -0.0291 0.0837 0.596 B_Naive1 L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 9.22e-01 -0.00709 0.0723 0.596 B_Naive1 L2
ENSG00000134644 PUM1 -353287 sc-eQTL 9.83e-01 0.00133 0.0638 0.596 B_Naive1 L2
ENSG00000162510 MATN1 -10881 sc-eQTL 1.16e-02 -0.162 0.0638 0.596 B_Naive1 L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 4.16e-01 0.0352 0.0432 0.596 B_Naive1 L2
ENSG00000162517 PEF1 -932192 sc-eQTL 1.46e-01 0.111 0.0759 0.596 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 3.32e-01 -0.0551 0.0567 0.596 B_Naive1 L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.61e-02 0.168 0.0692 0.596 B_Naive1 L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 1.62e-01 -0.124 0.0885 0.597 B_Naive2 L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 6.60e-05 -0.288 0.0707 0.597 B_Naive2 L2
ENSG00000134644 PUM1 -353287 sc-eQTL 9.27e-01 -0.00661 0.0718 0.597 B_Naive2 L2
ENSG00000162510 MATN1 -10881 sc-eQTL 2.03e-01 -0.0878 0.0687 0.597 B_Naive2 L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 1.64e-01 0.0651 0.0466 0.597 B_Naive2 L2
ENSG00000162517 PEF1 -932192 sc-eQTL 7.16e-01 -0.0311 0.0852 0.597 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.00e-01 -0.0574 0.0681 0.597 B_Naive2 L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.44e-01 -0.108 0.0733 0.597 B_Naive2 L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 2.83e-01 -0.0936 0.087 0.593 CD4_CTL L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 6.20e-01 0.0426 0.0857 0.593 CD4_CTL L2
ENSG00000134644 PUM1 -353287 sc-eQTL 2.80e-01 0.0909 0.0839 0.593 CD4_CTL L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.64e-01 -0.0681 0.0748 0.593 CD4_CTL L2
ENSG00000162517 PEF1 -932192 sc-eQTL 8.79e-01 0.0117 0.0769 0.593 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 3.61e-01 0.0749 0.0819 0.593 CD4_CTL L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 8.59e-01 -0.0129 0.0724 0.593 CD4_CTL L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 9.64e-01 0.00313 0.0691 0.596 CD4_Naive L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 8.33e-01 -0.0129 0.0613 0.596 CD4_Naive L2
ENSG00000134644 PUM1 -353287 sc-eQTL 7.84e-01 0.0134 0.0489 0.596 CD4_Naive L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 9.82e-01 0.0012 0.0524 0.596 CD4_Naive L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.96e-01 0.0225 0.0575 0.596 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.09e-01 -0.0439 0.0531 0.596 CD4_Naive L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 4.87e-01 0.0425 0.061 0.596 CD4_Naive L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 1.08e-01 0.139 0.086 0.596 CD4_TCM L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.36e-01 0.0671 0.0696 0.596 CD4_TCM L2
ENSG00000134644 PUM1 -353287 sc-eQTL 4.87e-01 -0.0429 0.0617 0.596 CD4_TCM L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.51e-01 0.0477 0.0511 0.596 CD4_TCM L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.92e-01 0.0272 0.0686 0.596 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 7.58e-01 0.02 0.065 0.596 CD4_TCM L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.39e-03 -0.229 0.0707 0.596 CD4_TCM L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 5.67e-01 0.0493 0.086 0.596 CD4_TEM L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 1.92e-01 0.107 0.0817 0.596 CD4_TEM L2
ENSG00000134644 PUM1 -353287 sc-eQTL 5.93e-01 -0.0366 0.0683 0.596 CD4_TEM L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 8.28e-01 0.0151 0.0691 0.596 CD4_TEM L2
ENSG00000162517 PEF1 -932192 sc-eQTL 7.23e-01 0.0275 0.0774 0.596 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.63e-01 -0.0594 0.0808 0.596 CD4_TEM L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.59e-01 0.09 0.0795 0.596 CD4_TEM L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 7.46e-01 0.0307 0.0945 0.596 CD8_CTL L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 2.54e-01 -0.0826 0.0723 0.596 CD8_CTL L2
ENSG00000134644 PUM1 -353287 sc-eQTL 4.94e-01 0.0482 0.0703 0.596 CD8_CTL L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.45e-01 -0.0736 0.0778 0.596 CD8_CTL L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.95e-01 0.0266 0.0679 0.596 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 2.43e-01 -0.0957 0.0817 0.596 CD8_CTL L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 3.90e-01 -0.0663 0.077 0.596 CD8_CTL L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 5.46e-01 0.0523 0.0864 0.596 CD8_Naive L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 5.43e-01 0.0454 0.0745 0.596 CD8_Naive L2
ENSG00000134644 PUM1 -353287 sc-eQTL 1.63e-01 -0.0835 0.0597 0.596 CD8_Naive L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 2.11e-01 0.0719 0.0573 0.596 CD8_Naive L2
ENSG00000162517 PEF1 -932192 sc-eQTL 5.13e-01 -0.0523 0.0799 0.596 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 7.90e-01 0.0191 0.0718 0.596 CD8_Naive L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.28e-01 0.0941 0.0779 0.596 CD8_Naive L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 7.65e-01 0.0283 0.0944 0.588 CD8_TCM L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 7.59e-01 0.0266 0.0865 0.588 CD8_TCM L2
ENSG00000134644 PUM1 -353287 sc-eQTL 3.38e-01 -0.0779 0.0812 0.588 CD8_TCM L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 4.67e-01 -0.0619 0.085 0.588 CD8_TCM L2
ENSG00000162517 PEF1 -932192 sc-eQTL 3.28e-01 -0.085 0.0868 0.588 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 5.09e-01 0.052 0.0787 0.588 CD8_TCM L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 5.47e-01 0.048 0.0796 0.588 CD8_TCM L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 9.03e-01 -0.0112 0.0921 0.589 CD8_TEM L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.81e-01 0.0773 0.0882 0.589 CD8_TEM L2
ENSG00000134644 PUM1 -353287 sc-eQTL 4.09e-01 -0.0746 0.0901 0.589 CD8_TEM L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 8.05e-01 -0.021 0.0849 0.589 CD8_TEM L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.61e-01 -0.0351 0.0799 0.589 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 2.49e-02 -0.197 0.087 0.589 CD8_TEM L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.39e-02 -0.179 0.0787 0.589 CD8_TEM L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 6.75e-01 0.0381 0.0909 0.593 MAIT L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.64e-01 0.0731 0.0804 0.593 MAIT L2
ENSG00000134644 PUM1 -353287 sc-eQTL 4.32e-01 -0.0608 0.0771 0.593 MAIT L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 7.46e-01 -0.0237 0.0728 0.593 MAIT L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.59e-01 0.0354 0.08 0.593 MAIT L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 5.72e-01 0.0458 0.0811 0.593 MAIT L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.86e-01 -0.0892 0.0834 0.593 MAIT L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 5.54e-01 0.0548 0.0926 0.598 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.21e-01 -0.0777 0.0781 0.598 NK_CD56bright L2
ENSG00000134644 PUM1 -353287 sc-eQTL 6.17e-01 0.0412 0.0822 0.598 NK_CD56bright L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.28e-01 0.0793 0.0809 0.598 NK_CD56bright L2
ENSG00000162517 PEF1 -932192 sc-eQTL 5.73e-01 -0.0444 0.0787 0.598 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 9.15e-01 0.00868 0.0815 0.598 NK_CD56bright L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.90e-01 0.085 0.0801 0.598 NK_CD56bright L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 7.27e-01 -0.0309 0.0884 0.597 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 2.80e-01 -0.0706 0.0652 0.597 NK_CD56dim L2
ENSG00000134644 PUM1 -353287 sc-eQTL 6.31e-01 0.0323 0.0671 0.597 NK_CD56dim L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 7.79e-02 -0.126 0.0711 0.597 NK_CD56dim L2
ENSG00000162517 PEF1 -932192 sc-eQTL 3.20e-01 -0.0633 0.0635 0.597 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 9.46e-01 -0.00609 0.0897 0.597 NK_CD56dim L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 9.02e-01 -0.00915 0.074 0.597 NK_CD56dim L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 7.11e-01 -0.0353 0.0949 0.605 NK_HLA L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 2.41e-02 0.19 0.0837 0.605 NK_HLA L2
ENSG00000134644 PUM1 -353287 sc-eQTL 2.20e-01 0.101 0.0823 0.605 NK_HLA L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 7.82e-01 -0.0218 0.0788 0.605 NK_HLA L2
ENSG00000162517 PEF1 -932192 sc-eQTL 2.61e-01 -0.0998 0.0885 0.605 NK_HLA L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 5.85e-01 0.0459 0.0838 0.605 NK_HLA L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.88e-01 -0.107 0.0807 0.605 NK_HLA L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 6.60e-01 -0.0382 0.0867 0.597 NK_cytokine L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 9.42e-01 0.00495 0.0677 0.597 NK_cytokine L2
ENSG00000134644 PUM1 -353287 sc-eQTL 1.61e-01 0.102 0.0728 0.597 NK_cytokine L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 4.59e-01 -0.0597 0.0805 0.597 NK_cytokine L2
ENSG00000162517 PEF1 -932192 sc-eQTL 8.91e-01 -0.00939 0.0686 0.597 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 6.46e-01 -0.0392 0.0853 0.597 NK_cytokine L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 9.69e-01 0.00307 0.0794 0.597 NK_cytokine L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 6.28e-01 0.0498 0.102 0.596 PB L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 9.59e-01 -0.00607 0.119 0.596 PB L2
ENSG00000134644 PUM1 -353287 sc-eQTL 8.08e-01 -0.0251 0.103 0.596 PB L2
ENSG00000162510 MATN1 -10881 sc-eQTL 4.18e-01 0.078 0.0959 0.596 PB L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 5.34e-01 -0.0428 0.0686 0.596 PB L2
ENSG00000162517 PEF1 -932192 sc-eQTL 8.59e-01 -0.0189 0.106 0.596 PB L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.11e-01 0.0774 0.0937 0.596 PB L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 4.89e-01 -0.0694 0.0999 0.596 PB L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 4.62e-02 -0.133 0.0662 0.591 Pro_T L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 8.03e-01 -0.0213 0.0849 0.591 Pro_T L2
ENSG00000134644 PUM1 -353287 sc-eQTL 1.95e-01 -0.103 0.0789 0.591 Pro_T L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 6.78e-02 0.103 0.0564 0.591 Pro_T L2
ENSG00000162517 PEF1 -932192 sc-eQTL 3.69e-02 0.173 0.0825 0.591 Pro_T L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 3.01e-01 -0.0822 0.0792 0.591 Pro_T L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 3.98e-01 -0.0617 0.0729 0.591 Pro_T L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 8.15e-01 0.021 0.0897 0.596 Treg L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.85e-01 0.0754 0.0866 0.596 Treg L2
ENSG00000134644 PUM1 -353287 sc-eQTL 7.37e-01 -0.0233 0.0694 0.596 Treg L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.68e-01 -0.0716 0.0793 0.596 Treg L2
ENSG00000162517 PEF1 -932192 sc-eQTL 2.81e-01 -0.0926 0.0856 0.596 Treg L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 9.13e-02 0.136 0.0805 0.596 Treg L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 4.14e-01 -0.0661 0.0808 0.596 Treg L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 3.36e-01 -0.0847 0.0879 0.595 cDC L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 6.36e-01 -0.0452 0.0954 0.595 cDC L2
ENSG00000134644 PUM1 -353287 sc-eQTL 5.75e-01 0.046 0.0819 0.595 cDC L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 5.68e-01 0.0329 0.0574 0.595 cDC L2
ENSG00000162517 PEF1 -932192 sc-eQTL 6.39e-01 -0.0391 0.0831 0.595 cDC L2
ENSG00000168528 SERINC2 -696861 sc-eQTL 6.42e-01 -0.0344 0.0737 0.595 cDC L2
ENSG00000284543 LINC01226 -793522 sc-eQTL 4.83e-03 0.202 0.0709 0.595 cDC L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.41e-01 -0.115 0.0775 0.595 cDC L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 8.38e-01 -0.0147 0.0717 0.596 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 7.94e-01 -0.0209 0.08 0.596 cMono_IL1B L2
ENSG00000134644 PUM1 -353287 sc-eQTL 8.76e-01 0.00846 0.0542 0.596 cMono_IL1B L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 5.11e-01 0.0313 0.0475 0.596 cMono_IL1B L2
ENSG00000162512 SDC3 -196054 sc-eQTL 4.10e-01 -0.0738 0.0894 0.596 cMono_IL1B L2
ENSG00000162517 PEF1 -932192 sc-eQTL 8.11e-01 -0.0175 0.0732 0.596 cMono_IL1B L2
ENSG00000168528 SERINC2 -696861 sc-eQTL 4.82e-01 -0.0638 0.0905 0.596 cMono_IL1B L2
ENSG00000284543 LINC01226 -793522 sc-eQTL 4.44e-01 0.0613 0.08 0.596 cMono_IL1B L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 8.03e-01 0.0186 0.0747 0.596 cMono_IL1B L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 8.62e-01 -0.0132 0.0759 0.596 cMono_S100A L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 7.02e-01 0.0344 0.0896 0.596 cMono_S100A L2
ENSG00000134644 PUM1 -353287 sc-eQTL 6.62e-01 0.0284 0.0648 0.596 cMono_S100A L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 7.39e-01 0.0166 0.0498 0.596 cMono_S100A L2
ENSG00000162512 SDC3 -196054 sc-eQTL 9.37e-01 0.00678 0.086 0.596 cMono_S100A L2
ENSG00000162517 PEF1 -932192 sc-eQTL 5.45e-01 -0.047 0.0776 0.596 cMono_S100A L2
ENSG00000168528 SERINC2 -696861 sc-eQTL 4.21e-01 -0.0733 0.091 0.596 cMono_S100A L2
ENSG00000284543 LINC01226 -793522 sc-eQTL 5.73e-01 0.0418 0.0739 0.596 cMono_S100A L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 9.02e-01 0.00917 0.0743 0.596 cMono_S100A L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 9.02e-01 0.014 0.114 0.576 gdT L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 7.55e-01 0.0305 0.0975 0.576 gdT L2
ENSG00000134644 PUM1 -353287 sc-eQTL 3.63e-01 0.0914 0.1 0.576 gdT L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 7.00e-01 -0.0422 0.109 0.576 gdT L2
ENSG00000162517 PEF1 -932192 sc-eQTL 9.12e-01 0.011 0.1 0.576 gdT L2
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 9.20e-01 -0.0102 0.101 0.576 gdT L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 7.34e-01 -0.0333 0.0977 0.576 gdT L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 9.66e-01 0.00354 0.0842 0.593 intMono L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 2.47e-01 -0.105 0.0902 0.593 intMono L2
ENSG00000134644 PUM1 -353287 sc-eQTL 8.84e-01 -0.0112 0.0768 0.593 intMono L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.64e-02 0.125 0.0596 0.593 intMono L2
ENSG00000162512 SDC3 -196054 sc-eQTL 3.77e-01 -0.0729 0.0823 0.593 intMono L2
ENSG00000162517 PEF1 -932192 sc-eQTL 4.88e-01 -0.0601 0.0866 0.593 intMono L2
ENSG00000168528 SERINC2 -696861 sc-eQTL 7.05e-02 -0.156 0.0856 0.593 intMono L2
ENSG00000284543 LINC01226 -793522 sc-eQTL 9.30e-01 -0.00722 0.0818 0.593 intMono L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 7.67e-01 -0.0243 0.0818 0.593 intMono L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 1.95e-01 0.103 0.0788 0.59 ncMono L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 4.71e-01 -0.0609 0.0843 0.59 ncMono L2
ENSG00000134644 PUM1 -353287 sc-eQTL 3.19e-01 0.0687 0.0688 0.59 ncMono L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 7.75e-01 0.0179 0.0626 0.59 ncMono L2
ENSG00000162512 SDC3 -196054 sc-eQTL 1.68e-01 -0.0966 0.0699 0.59 ncMono L2
ENSG00000162517 PEF1 -932192 sc-eQTL 8.71e-01 0.0131 0.0805 0.59 ncMono L2
ENSG00000168528 SERINC2 -696861 sc-eQTL 6.67e-01 -0.033 0.0766 0.59 ncMono L2
ENSG00000284543 LINC01226 -793522 sc-eQTL 2.78e-01 -0.0831 0.0763 0.59 ncMono L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.09e-01 -0.127 0.0789 0.59 ncMono L2
ENSG00000060688 SNRNP40 -584084 sc-eQTL 5.96e-01 -0.0465 0.0876 0.579 pDC L2
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 1.63e-01 0.134 0.0956 0.579 pDC L2
ENSG00000134644 PUM1 -353287 sc-eQTL 8.07e-01 -0.0195 0.0798 0.579 pDC L2
ENSG00000162511 LAPTM5 -45070 sc-eQTL 6.52e-01 0.0335 0.0741 0.579 pDC L2
ENSG00000162517 PEF1 -932192 sc-eQTL 5.99e-01 -0.0507 0.0962 0.579 pDC L2
ENSG00000168528 SERINC2 -696861 sc-eQTL 3.82e-01 -0.0786 0.0897 0.579 pDC L2
ENSG00000284543 LINC01226 -793522 sc-eQTL 5.77e-01 -0.039 0.0698 0.579 pDC L2
ENSG00000287510 AL137857.1 -18989 sc-eQTL 7.96e-01 0.0213 0.0821 0.579 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -584084 sc-eQTL 3.73e-01 0.0797 0.0893 0.596 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.71e-01 0.0666 0.0743 0.596 B_Memory LOneK1K
ENSG00000134644 PUM1 -353287 sc-eQTL 2.48e-01 0.0763 0.0658 0.596 B_Memory LOneK1K
ENSG00000162510 MATN1 -10881 sc-eQTL 1.57e-01 0.106 0.0749 0.596 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -45070 sc-eQTL 7.96e-02 0.0827 0.0469 0.596 B_Memory LOneK1K
ENSG00000162517 PEF1 -932192 sc-eQTL 8.62e-01 -0.0137 0.0783 0.596 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 4.33e-01 0.049 0.0624 0.596 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.66e-01 -0.0942 0.0678 0.596 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -584084 sc-eQTL 1.66e-01 -0.112 0.0808 0.596 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 5.38e-02 -0.123 0.0636 0.596 B_Naive LOneK1K
ENSG00000134644 PUM1 -353287 sc-eQTL 7.81e-01 -0.0169 0.0607 0.596 B_Naive LOneK1K
ENSG00000162510 MATN1 -10881 sc-eQTL 5.53e-03 -0.161 0.0574 0.596 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -45070 sc-eQTL 3.95e-01 0.0351 0.0411 0.596 B_Naive LOneK1K
ENSG00000162517 PEF1 -932192 sc-eQTL 3.68e-01 0.0676 0.075 0.596 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 2.41e-01 -0.0623 0.053 0.596 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -18989 sc-eQTL 1.01e-01 0.103 0.0627 0.596 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -584084 sc-eQTL 5.80e-01 -0.0378 0.0682 0.596 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 8.74e-01 -0.0122 0.0773 0.596 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -353287 sc-eQTL 6.44e-01 0.0228 0.0493 0.596 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -45070 sc-eQTL 6.50e-01 0.0197 0.0433 0.596 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -196054 sc-eQTL 4.73e-01 -0.0635 0.0883 0.596 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -932192 sc-eQTL 7.31e-01 -0.0214 0.0621 0.596 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -696861 sc-eQTL 4.91e-01 -0.0626 0.0908 0.596 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -793522 sc-eQTL 4.59e-01 0.0552 0.0744 0.596 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -18989 sc-eQTL 5.79e-01 0.0388 0.0697 0.596 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -584084 sc-eQTL 1.56e-01 0.108 0.076 0.597 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 3.11e-01 -0.0846 0.0833 0.597 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -353287 sc-eQTL 4.24e-01 0.0547 0.0683 0.597 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -45070 sc-eQTL 8.92e-02 0.0928 0.0544 0.597 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -196054 sc-eQTL 2.61e-01 -0.0898 0.0797 0.597 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -932192 sc-eQTL 4.70e-01 -0.0525 0.0725 0.597 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -696861 sc-eQTL 1.52e-01 -0.119 0.0825 0.597 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -793522 sc-eQTL 5.07e-01 -0.0523 0.0786 0.597 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.88e-01 -0.0837 0.0786 0.597 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -584084 sc-eQTL 8.69e-01 -0.0139 0.0842 0.597 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -584278 sc-eQTL 6.01e-01 -0.0301 0.0575 0.597 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -353287 sc-eQTL 2.73e-01 0.069 0.0628 0.597 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -45070 sc-eQTL 1.63e-01 -0.0981 0.0701 0.597 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -932192 sc-eQTL 5.72e-01 -0.0303 0.0535 0.597 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -5800 sc-eQTL 5.81e-01 -0.0449 0.0812 0.597 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -18989 sc-eQTL 2.95e-01 -0.0734 0.0699 0.597 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168528 SERINC2 -696861 eQTL 0.023 0.0905 0.0397 0.0 0.0 0.361
ENSG00000186056 MATN1-AS1 -5800 eQTL 7.43e-02 -0.0232 0.013 0.0 0.00725 0.361

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162510 \N -10881 0.00037 0.000393 4.7e-05 0.000109 5.73e-05 0.000126 0.000301 6.08e-05 0.000299 0.000144 0.000376 0.000197 0.00042 0.000197 9.45e-05 0.000211 0.000118 0.000213 6.43e-05 5.4e-05 0.000161 0.000356 0.000246 6.62e-05 0.000373 9.37e-05 0.000171 0.000121 0.000281 0.000105 0.000195 6.16e-06 1.99e-05 5.6e-05 5.46e-05 4.2e-05 1.37e-05 1.42e-05 3.33e-05 1.01e-05 3.89e-06 0.000423 4.98e-05 4.49e-06 3.04e-05 5.4e-05 4.26e-05 1.92e-05 7.49e-06