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Genes within 1Mb (chr1:30712259:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -584529 sc-eQTL 3.92e-01 -0.0652 0.076 0.596 B L1
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.03e-01 -0.0628 0.0608 0.596 B L1
ENSG00000134644 PUM1 -353732 sc-eQTL 3.74e-01 0.0455 0.0511 0.596 B L1
ENSG00000162510 MATN1 -11326 sc-eQTL 5.78e-02 -0.102 0.0533 0.596 B L1
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.01e-01 0.0436 0.042 0.596 B L1
ENSG00000162517 PEF1 -932637 sc-eQTL 4.75e-01 0.0455 0.0635 0.596 B L1
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.03e-01 -0.0413 0.0493 0.596 B L1
ENSG00000287510 AL137857.1 -19434 sc-eQTL 5.47e-01 0.0352 0.0584 0.596 B L1
ENSG00000060688 SNRNP40 -584529 sc-eQTL 6.29e-01 0.0319 0.0659 0.596 CD4T L1
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 2.69e-01 0.0569 0.0514 0.596 CD4T L1
ENSG00000134644 PUM1 -353732 sc-eQTL 7.75e-01 -0.0132 0.0459 0.596 CD4T L1
ENSG00000162511 LAPTM5 -45515 sc-eQTL 9.29e-01 0.00455 0.0508 0.596 CD4T L1
ENSG00000162517 PEF1 -932637 sc-eQTL 7.73e-01 0.0153 0.0531 0.596 CD4T L1
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 9.27e-01 -0.00417 0.0455 0.596 CD4T L1
ENSG00000287510 AL137857.1 -19434 sc-eQTL 4.86e-01 -0.038 0.0544 0.596 CD4T L1
ENSG00000060688 SNRNP40 -584529 sc-eQTL 5.12e-01 0.0565 0.086 0.596 CD8T L1
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 9.99e-01 -5.67e-05 0.0573 0.596 CD8T L1
ENSG00000134644 PUM1 -353732 sc-eQTL 8.77e-01 -0.0078 0.0505 0.596 CD8T L1
ENSG00000162511 LAPTM5 -45515 sc-eQTL 9.06e-01 0.00581 0.049 0.596 CD8T L1
ENSG00000162517 PEF1 -932637 sc-eQTL 5.83e-01 -0.0332 0.0603 0.596 CD8T L1
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 5.01e-01 -0.0387 0.0574 0.596 CD8T L1
ENSG00000287510 AL137857.1 -19434 sc-eQTL 8.93e-01 -0.00974 0.0722 0.596 CD8T L1
ENSG00000060688 SNRNP40 -584529 sc-eQTL 2.66e-01 -0.0856 0.0768 0.595 DC L1
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.20e-01 0.0907 0.091 0.595 DC L1
ENSG00000134644 PUM1 -353732 sc-eQTL 3.73e-01 0.0637 0.0713 0.595 DC L1
ENSG00000162511 LAPTM5 -45515 sc-eQTL 9.25e-01 0.00481 0.051 0.595 DC L1
ENSG00000162517 PEF1 -932637 sc-eQTL 5.82e-01 -0.0456 0.0827 0.595 DC L1
ENSG00000168528 SERINC2 -697306 sc-eQTL 7.61e-01 -0.0256 0.0841 0.595 DC L1
ENSG00000284543 LINC01226 -793967 sc-eQTL 6.33e-01 0.0267 0.0557 0.595 DC L1
ENSG00000287510 AL137857.1 -19434 sc-eQTL 8.94e-02 -0.137 0.0801 0.595 DC L1
ENSG00000060688 SNRNP40 -584529 sc-eQTL 6.80e-01 0.0247 0.0598 0.596 Mono L1
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 5.61e-01 -0.0431 0.074 0.596 Mono L1
ENSG00000134644 PUM1 -353732 sc-eQTL 5.83e-01 0.0261 0.0475 0.596 Mono L1
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.85e-01 0.038 0.0436 0.596 Mono L1
ENSG00000162512 SDC3 -196499 sc-eQTL 1.52e-01 -0.12 0.0836 0.596 Mono L1
ENSG00000162517 PEF1 -932637 sc-eQTL 5.39e-01 -0.0362 0.0589 0.596 Mono L1
ENSG00000168528 SERINC2 -697306 sc-eQTL 4.51e-01 -0.068 0.09 0.596 Mono L1
ENSG00000284543 LINC01226 -793967 sc-eQTL 6.36e-01 0.0376 0.0793 0.596 Mono L1
ENSG00000287510 AL137857.1 -19434 sc-eQTL 9.98e-01 0.000186 0.0694 0.596 Mono L1
ENSG00000060688 SNRNP40 -584529 sc-eQTL 9.57e-01 0.0045 0.0837 0.597 NK L1
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.36e-01 -0.0551 0.0572 0.597 NK L1
ENSG00000134644 PUM1 -353732 sc-eQTL 2.37e-01 0.0711 0.0599 0.597 NK L1
ENSG00000162511 LAPTM5 -45515 sc-eQTL 1.90e-01 -0.0906 0.0689 0.597 NK L1
ENSG00000162517 PEF1 -932637 sc-eQTL 4.21e-01 -0.0407 0.0504 0.597 NK L1
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 6.75e-01 -0.0326 0.0777 0.597 NK L1
ENSG00000287510 AL137857.1 -19434 sc-eQTL 8.12e-01 0.0171 0.0718 0.597 NK L1
ENSG00000060688 SNRNP40 -584529 sc-eQTL 7.09e-01 -0.0233 0.0624 0.596 Other_T L1
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 8.41e-01 0.0134 0.0667 0.596 Other_T L1
ENSG00000134644 PUM1 -353732 sc-eQTL 4.43e-02 -0.12 0.0594 0.596 Other_T L1
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.23e-01 0.0486 0.049 0.596 Other_T L1
ENSG00000162517 PEF1 -932637 sc-eQTL 1.61e-01 0.092 0.0653 0.596 Other_T L1
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.45e-01 0.0615 0.0804 0.596 Other_T L1
ENSG00000287510 AL137857.1 -19434 sc-eQTL 5.97e-01 -0.0443 0.0838 0.596 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -584529 sc-eQTL 5.88e-01 0.0533 0.0981 0.61 B_Activated L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 4.64e-01 0.0725 0.0989 0.61 B_Activated L2
ENSG00000134644 PUM1 -353732 sc-eQTL 6.21e-01 0.0456 0.0919 0.61 B_Activated L2
ENSG00000162510 MATN1 -11326 sc-eQTL 2.26e-01 -0.0972 0.0801 0.61 B_Activated L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 9.31e-01 0.00486 0.0561 0.61 B_Activated L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.10e-02 0.178 0.0945 0.61 B_Activated L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.37e-01 0.0705 0.0904 0.61 B_Activated L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.83e-01 -0.086 0.0798 0.61 B_Activated L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 4.44e-01 0.0718 0.0936 0.594 B_Intermediate L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 8.61e-01 0.0137 0.0781 0.594 B_Intermediate L2
ENSG00000134644 PUM1 -353732 sc-eQTL 4.39e-01 0.0571 0.0736 0.594 B_Intermediate L2
ENSG00000162510 MATN1 -11326 sc-eQTL 3.33e-02 0.163 0.0759 0.594 B_Intermediate L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.90e-01 0.0405 0.047 0.594 B_Intermediate L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.93e-01 -0.0345 0.0874 0.594 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 7.15e-01 0.0241 0.0661 0.594 B_Intermediate L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 3.13e-01 -0.0747 0.0738 0.594 B_Intermediate L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 7.17e-01 0.0336 0.0925 0.599 B_Memory L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 4.85e-01 0.0596 0.0851 0.599 B_Memory L2
ENSG00000134644 PUM1 -353732 sc-eQTL 6.25e-01 0.0362 0.0741 0.599 B_Memory L2
ENSG00000162510 MATN1 -11326 sc-eQTL 9.40e-01 -0.00537 0.0709 0.599 B_Memory L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 1.07e-01 0.101 0.0625 0.599 B_Memory L2
ENSG00000162517 PEF1 -932637 sc-eQTL 7.59e-01 -0.0258 0.084 0.599 B_Memory L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 6.88e-01 0.0289 0.0719 0.599 B_Memory L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 6.12e-01 0.0428 0.0842 0.599 B_Memory L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 7.29e-01 -0.0291 0.0837 0.596 B_Naive1 L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 9.22e-01 -0.00709 0.0723 0.596 B_Naive1 L2
ENSG00000134644 PUM1 -353732 sc-eQTL 9.83e-01 0.00133 0.0638 0.596 B_Naive1 L2
ENSG00000162510 MATN1 -11326 sc-eQTL 1.16e-02 -0.162 0.0638 0.596 B_Naive1 L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 4.16e-01 0.0352 0.0432 0.596 B_Naive1 L2
ENSG00000162517 PEF1 -932637 sc-eQTL 1.46e-01 0.111 0.0759 0.596 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 3.32e-01 -0.0551 0.0567 0.596 B_Naive1 L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.61e-02 0.168 0.0692 0.596 B_Naive1 L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 1.62e-01 -0.124 0.0885 0.597 B_Naive2 L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 6.60e-05 -0.288 0.0707 0.597 B_Naive2 L2
ENSG00000134644 PUM1 -353732 sc-eQTL 9.27e-01 -0.00661 0.0718 0.597 B_Naive2 L2
ENSG00000162510 MATN1 -11326 sc-eQTL 2.03e-01 -0.0878 0.0687 0.597 B_Naive2 L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 1.64e-01 0.0651 0.0466 0.597 B_Naive2 L2
ENSG00000162517 PEF1 -932637 sc-eQTL 7.16e-01 -0.0311 0.0852 0.597 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.00e-01 -0.0574 0.0681 0.597 B_Naive2 L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.44e-01 -0.108 0.0733 0.597 B_Naive2 L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 2.83e-01 -0.0936 0.087 0.593 CD4_CTL L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 6.20e-01 0.0426 0.0857 0.593 CD4_CTL L2
ENSG00000134644 PUM1 -353732 sc-eQTL 2.80e-01 0.0909 0.0839 0.593 CD4_CTL L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.64e-01 -0.0681 0.0748 0.593 CD4_CTL L2
ENSG00000162517 PEF1 -932637 sc-eQTL 8.79e-01 0.0117 0.0769 0.593 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 3.61e-01 0.0749 0.0819 0.593 CD4_CTL L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 8.59e-01 -0.0129 0.0724 0.593 CD4_CTL L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 9.64e-01 0.00313 0.0691 0.596 CD4_Naive L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 8.33e-01 -0.0129 0.0613 0.596 CD4_Naive L2
ENSG00000134644 PUM1 -353732 sc-eQTL 7.84e-01 0.0134 0.0489 0.596 CD4_Naive L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 9.82e-01 0.0012 0.0524 0.596 CD4_Naive L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.96e-01 0.0225 0.0575 0.596 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.09e-01 -0.0439 0.0531 0.596 CD4_Naive L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 4.87e-01 0.0425 0.061 0.596 CD4_Naive L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 1.08e-01 0.139 0.086 0.596 CD4_TCM L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.36e-01 0.0671 0.0696 0.596 CD4_TCM L2
ENSG00000134644 PUM1 -353732 sc-eQTL 4.87e-01 -0.0429 0.0617 0.596 CD4_TCM L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.51e-01 0.0477 0.0511 0.596 CD4_TCM L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.92e-01 0.0272 0.0686 0.596 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 7.58e-01 0.02 0.065 0.596 CD4_TCM L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.39e-03 -0.229 0.0707 0.596 CD4_TCM L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 5.67e-01 0.0493 0.086 0.596 CD4_TEM L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 1.92e-01 0.107 0.0817 0.596 CD4_TEM L2
ENSG00000134644 PUM1 -353732 sc-eQTL 5.93e-01 -0.0366 0.0683 0.596 CD4_TEM L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 8.28e-01 0.0151 0.0691 0.596 CD4_TEM L2
ENSG00000162517 PEF1 -932637 sc-eQTL 7.23e-01 0.0275 0.0774 0.596 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.63e-01 -0.0594 0.0808 0.596 CD4_TEM L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.59e-01 0.09 0.0795 0.596 CD4_TEM L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 7.46e-01 0.0307 0.0945 0.596 CD8_CTL L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 2.54e-01 -0.0826 0.0723 0.596 CD8_CTL L2
ENSG00000134644 PUM1 -353732 sc-eQTL 4.94e-01 0.0482 0.0703 0.596 CD8_CTL L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.45e-01 -0.0736 0.0778 0.596 CD8_CTL L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.95e-01 0.0266 0.0679 0.596 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 2.43e-01 -0.0957 0.0817 0.596 CD8_CTL L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 3.90e-01 -0.0663 0.077 0.596 CD8_CTL L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 5.46e-01 0.0523 0.0864 0.596 CD8_Naive L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 5.43e-01 0.0454 0.0745 0.596 CD8_Naive L2
ENSG00000134644 PUM1 -353732 sc-eQTL 1.63e-01 -0.0835 0.0597 0.596 CD8_Naive L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 2.11e-01 0.0719 0.0573 0.596 CD8_Naive L2
ENSG00000162517 PEF1 -932637 sc-eQTL 5.13e-01 -0.0523 0.0799 0.596 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 7.90e-01 0.0191 0.0718 0.596 CD8_Naive L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.28e-01 0.0941 0.0779 0.596 CD8_Naive L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 7.65e-01 0.0283 0.0944 0.588 CD8_TCM L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 7.59e-01 0.0266 0.0865 0.588 CD8_TCM L2
ENSG00000134644 PUM1 -353732 sc-eQTL 3.38e-01 -0.0779 0.0812 0.588 CD8_TCM L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 4.67e-01 -0.0619 0.085 0.588 CD8_TCM L2
ENSG00000162517 PEF1 -932637 sc-eQTL 3.28e-01 -0.085 0.0868 0.588 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 5.09e-01 0.052 0.0787 0.588 CD8_TCM L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 5.47e-01 0.048 0.0796 0.588 CD8_TCM L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 9.03e-01 -0.0112 0.0921 0.589 CD8_TEM L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.81e-01 0.0773 0.0882 0.589 CD8_TEM L2
ENSG00000134644 PUM1 -353732 sc-eQTL 4.09e-01 -0.0746 0.0901 0.589 CD8_TEM L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 8.05e-01 -0.021 0.0849 0.589 CD8_TEM L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.61e-01 -0.0351 0.0799 0.589 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 2.49e-02 -0.197 0.087 0.589 CD8_TEM L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.39e-02 -0.179 0.0787 0.589 CD8_TEM L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 6.75e-01 0.0381 0.0909 0.593 MAIT L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.64e-01 0.0731 0.0804 0.593 MAIT L2
ENSG00000134644 PUM1 -353732 sc-eQTL 4.32e-01 -0.0608 0.0771 0.593 MAIT L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 7.46e-01 -0.0237 0.0728 0.593 MAIT L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.59e-01 0.0354 0.08 0.593 MAIT L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 5.72e-01 0.0458 0.0811 0.593 MAIT L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.86e-01 -0.0892 0.0834 0.593 MAIT L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 5.54e-01 0.0548 0.0926 0.598 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.21e-01 -0.0777 0.0781 0.598 NK_CD56bright L2
ENSG00000134644 PUM1 -353732 sc-eQTL 6.17e-01 0.0412 0.0822 0.598 NK_CD56bright L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.28e-01 0.0793 0.0809 0.598 NK_CD56bright L2
ENSG00000162517 PEF1 -932637 sc-eQTL 5.73e-01 -0.0444 0.0787 0.598 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 9.15e-01 0.00868 0.0815 0.598 NK_CD56bright L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.90e-01 0.085 0.0801 0.598 NK_CD56bright L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 7.27e-01 -0.0309 0.0884 0.597 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 2.80e-01 -0.0706 0.0652 0.597 NK_CD56dim L2
ENSG00000134644 PUM1 -353732 sc-eQTL 6.31e-01 0.0323 0.0671 0.597 NK_CD56dim L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 7.79e-02 -0.126 0.0711 0.597 NK_CD56dim L2
ENSG00000162517 PEF1 -932637 sc-eQTL 3.20e-01 -0.0633 0.0635 0.597 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 9.46e-01 -0.00609 0.0897 0.597 NK_CD56dim L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 9.02e-01 -0.00915 0.074 0.597 NK_CD56dim L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 7.11e-01 -0.0353 0.0949 0.605 NK_HLA L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 2.41e-02 0.19 0.0837 0.605 NK_HLA L2
ENSG00000134644 PUM1 -353732 sc-eQTL 2.20e-01 0.101 0.0823 0.605 NK_HLA L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 7.82e-01 -0.0218 0.0788 0.605 NK_HLA L2
ENSG00000162517 PEF1 -932637 sc-eQTL 2.61e-01 -0.0998 0.0885 0.605 NK_HLA L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 5.85e-01 0.0459 0.0838 0.605 NK_HLA L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.88e-01 -0.107 0.0807 0.605 NK_HLA L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 6.60e-01 -0.0382 0.0867 0.597 NK_cytokine L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 9.42e-01 0.00495 0.0677 0.597 NK_cytokine L2
ENSG00000134644 PUM1 -353732 sc-eQTL 1.61e-01 0.102 0.0728 0.597 NK_cytokine L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 4.59e-01 -0.0597 0.0805 0.597 NK_cytokine L2
ENSG00000162517 PEF1 -932637 sc-eQTL 8.91e-01 -0.00939 0.0686 0.597 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 6.46e-01 -0.0392 0.0853 0.597 NK_cytokine L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 9.69e-01 0.00307 0.0794 0.597 NK_cytokine L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 6.28e-01 0.0498 0.102 0.596 PB L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 9.59e-01 -0.00607 0.119 0.596 PB L2
ENSG00000134644 PUM1 -353732 sc-eQTL 8.08e-01 -0.0251 0.103 0.596 PB L2
ENSG00000162510 MATN1 -11326 sc-eQTL 4.18e-01 0.078 0.0959 0.596 PB L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 5.34e-01 -0.0428 0.0686 0.596 PB L2
ENSG00000162517 PEF1 -932637 sc-eQTL 8.59e-01 -0.0189 0.106 0.596 PB L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.11e-01 0.0774 0.0937 0.596 PB L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 4.89e-01 -0.0694 0.0999 0.596 PB L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 4.62e-02 -0.133 0.0662 0.591 Pro_T L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 8.03e-01 -0.0213 0.0849 0.591 Pro_T L2
ENSG00000134644 PUM1 -353732 sc-eQTL 1.95e-01 -0.103 0.0789 0.591 Pro_T L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 6.78e-02 0.103 0.0564 0.591 Pro_T L2
ENSG00000162517 PEF1 -932637 sc-eQTL 3.69e-02 0.173 0.0825 0.591 Pro_T L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 3.01e-01 -0.0822 0.0792 0.591 Pro_T L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 3.98e-01 -0.0617 0.0729 0.591 Pro_T L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 8.15e-01 0.021 0.0897 0.596 Treg L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.85e-01 0.0754 0.0866 0.596 Treg L2
ENSG00000134644 PUM1 -353732 sc-eQTL 7.37e-01 -0.0233 0.0694 0.596 Treg L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.68e-01 -0.0716 0.0793 0.596 Treg L2
ENSG00000162517 PEF1 -932637 sc-eQTL 2.81e-01 -0.0926 0.0856 0.596 Treg L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 9.13e-02 0.136 0.0805 0.596 Treg L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 4.14e-01 -0.0661 0.0808 0.596 Treg L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 3.36e-01 -0.0847 0.0879 0.595 cDC L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 6.36e-01 -0.0452 0.0954 0.595 cDC L2
ENSG00000134644 PUM1 -353732 sc-eQTL 5.75e-01 0.046 0.0819 0.595 cDC L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 5.68e-01 0.0329 0.0574 0.595 cDC L2
ENSG00000162517 PEF1 -932637 sc-eQTL 6.39e-01 -0.0391 0.0831 0.595 cDC L2
ENSG00000168528 SERINC2 -697306 sc-eQTL 6.42e-01 -0.0344 0.0737 0.595 cDC L2
ENSG00000284543 LINC01226 -793967 sc-eQTL 4.83e-03 0.202 0.0709 0.595 cDC L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.41e-01 -0.115 0.0775 0.595 cDC L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 8.38e-01 -0.0147 0.0717 0.596 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 7.94e-01 -0.0209 0.08 0.596 cMono_IL1B L2
ENSG00000134644 PUM1 -353732 sc-eQTL 8.76e-01 0.00846 0.0542 0.596 cMono_IL1B L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 5.11e-01 0.0313 0.0475 0.596 cMono_IL1B L2
ENSG00000162512 SDC3 -196499 sc-eQTL 4.10e-01 -0.0738 0.0894 0.596 cMono_IL1B L2
ENSG00000162517 PEF1 -932637 sc-eQTL 8.11e-01 -0.0175 0.0732 0.596 cMono_IL1B L2
ENSG00000168528 SERINC2 -697306 sc-eQTL 4.82e-01 -0.0638 0.0905 0.596 cMono_IL1B L2
ENSG00000284543 LINC01226 -793967 sc-eQTL 4.44e-01 0.0613 0.08 0.596 cMono_IL1B L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 8.03e-01 0.0186 0.0747 0.596 cMono_IL1B L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 8.62e-01 -0.0132 0.0759 0.596 cMono_S100A L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 7.02e-01 0.0344 0.0896 0.596 cMono_S100A L2
ENSG00000134644 PUM1 -353732 sc-eQTL 6.62e-01 0.0284 0.0648 0.596 cMono_S100A L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 7.39e-01 0.0166 0.0498 0.596 cMono_S100A L2
ENSG00000162512 SDC3 -196499 sc-eQTL 9.37e-01 0.00678 0.086 0.596 cMono_S100A L2
ENSG00000162517 PEF1 -932637 sc-eQTL 5.45e-01 -0.047 0.0776 0.596 cMono_S100A L2
ENSG00000168528 SERINC2 -697306 sc-eQTL 4.21e-01 -0.0733 0.091 0.596 cMono_S100A L2
ENSG00000284543 LINC01226 -793967 sc-eQTL 5.73e-01 0.0418 0.0739 0.596 cMono_S100A L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 9.02e-01 0.00917 0.0743 0.596 cMono_S100A L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 9.02e-01 0.014 0.114 0.576 gdT L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 7.55e-01 0.0305 0.0975 0.576 gdT L2
ENSG00000134644 PUM1 -353732 sc-eQTL 3.63e-01 0.0914 0.1 0.576 gdT L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 7.00e-01 -0.0422 0.109 0.576 gdT L2
ENSG00000162517 PEF1 -932637 sc-eQTL 9.12e-01 0.011 0.1 0.576 gdT L2
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 9.20e-01 -0.0102 0.101 0.576 gdT L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 7.34e-01 -0.0333 0.0977 0.576 gdT L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 9.66e-01 0.00354 0.0842 0.593 intMono L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 2.47e-01 -0.105 0.0902 0.593 intMono L2
ENSG00000134644 PUM1 -353732 sc-eQTL 8.84e-01 -0.0112 0.0768 0.593 intMono L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.64e-02 0.125 0.0596 0.593 intMono L2
ENSG00000162512 SDC3 -196499 sc-eQTL 3.77e-01 -0.0729 0.0823 0.593 intMono L2
ENSG00000162517 PEF1 -932637 sc-eQTL 4.88e-01 -0.0601 0.0866 0.593 intMono L2
ENSG00000168528 SERINC2 -697306 sc-eQTL 7.05e-02 -0.156 0.0856 0.593 intMono L2
ENSG00000284543 LINC01226 -793967 sc-eQTL 9.30e-01 -0.00722 0.0818 0.593 intMono L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 7.67e-01 -0.0243 0.0818 0.593 intMono L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 1.95e-01 0.103 0.0788 0.59 ncMono L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 4.71e-01 -0.0609 0.0843 0.59 ncMono L2
ENSG00000134644 PUM1 -353732 sc-eQTL 3.19e-01 0.0687 0.0688 0.59 ncMono L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 7.75e-01 0.0179 0.0626 0.59 ncMono L2
ENSG00000162512 SDC3 -196499 sc-eQTL 1.68e-01 -0.0966 0.0699 0.59 ncMono L2
ENSG00000162517 PEF1 -932637 sc-eQTL 8.71e-01 0.0131 0.0805 0.59 ncMono L2
ENSG00000168528 SERINC2 -697306 sc-eQTL 6.67e-01 -0.033 0.0766 0.59 ncMono L2
ENSG00000284543 LINC01226 -793967 sc-eQTL 2.78e-01 -0.0831 0.0763 0.59 ncMono L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.09e-01 -0.127 0.0789 0.59 ncMono L2
ENSG00000060688 SNRNP40 -584529 sc-eQTL 5.96e-01 -0.0465 0.0876 0.579 pDC L2
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 1.63e-01 0.134 0.0956 0.579 pDC L2
ENSG00000134644 PUM1 -353732 sc-eQTL 8.07e-01 -0.0195 0.0798 0.579 pDC L2
ENSG00000162511 LAPTM5 -45515 sc-eQTL 6.52e-01 0.0335 0.0741 0.579 pDC L2
ENSG00000162517 PEF1 -932637 sc-eQTL 5.99e-01 -0.0507 0.0962 0.579 pDC L2
ENSG00000168528 SERINC2 -697306 sc-eQTL 3.82e-01 -0.0786 0.0897 0.579 pDC L2
ENSG00000284543 LINC01226 -793967 sc-eQTL 5.77e-01 -0.039 0.0698 0.579 pDC L2
ENSG00000287510 AL137857.1 -19434 sc-eQTL 7.96e-01 0.0213 0.0821 0.579 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -584529 sc-eQTL 3.73e-01 0.0797 0.0893 0.596 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.71e-01 0.0666 0.0743 0.596 B_Memory LOneK1K
ENSG00000134644 PUM1 -353732 sc-eQTL 2.48e-01 0.0763 0.0658 0.596 B_Memory LOneK1K
ENSG00000162510 MATN1 -11326 sc-eQTL 1.57e-01 0.106 0.0749 0.596 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -45515 sc-eQTL 7.96e-02 0.0827 0.0469 0.596 B_Memory LOneK1K
ENSG00000162517 PEF1 -932637 sc-eQTL 8.62e-01 -0.0137 0.0783 0.596 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 4.33e-01 0.049 0.0624 0.596 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.66e-01 -0.0942 0.0678 0.596 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -584529 sc-eQTL 1.66e-01 -0.112 0.0808 0.596 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 5.38e-02 -0.123 0.0636 0.596 B_Naive LOneK1K
ENSG00000134644 PUM1 -353732 sc-eQTL 7.81e-01 -0.0169 0.0607 0.596 B_Naive LOneK1K
ENSG00000162510 MATN1 -11326 sc-eQTL 5.53e-03 -0.161 0.0574 0.596 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -45515 sc-eQTL 3.95e-01 0.0351 0.0411 0.596 B_Naive LOneK1K
ENSG00000162517 PEF1 -932637 sc-eQTL 3.68e-01 0.0676 0.075 0.596 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 2.41e-01 -0.0623 0.053 0.596 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -19434 sc-eQTL 1.01e-01 0.103 0.0627 0.596 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -584529 sc-eQTL 5.80e-01 -0.0378 0.0682 0.596 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 8.74e-01 -0.0122 0.0773 0.596 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -353732 sc-eQTL 6.44e-01 0.0228 0.0493 0.596 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -45515 sc-eQTL 6.50e-01 0.0197 0.0433 0.596 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -196499 sc-eQTL 4.73e-01 -0.0635 0.0883 0.596 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -932637 sc-eQTL 7.31e-01 -0.0214 0.0621 0.596 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -697306 sc-eQTL 4.91e-01 -0.0626 0.0908 0.596 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -793967 sc-eQTL 4.59e-01 0.0552 0.0744 0.596 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -19434 sc-eQTL 5.79e-01 0.0388 0.0697 0.596 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -584529 sc-eQTL 1.56e-01 0.108 0.076 0.597 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 3.11e-01 -0.0846 0.0833 0.597 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -353732 sc-eQTL 4.24e-01 0.0547 0.0683 0.597 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -45515 sc-eQTL 8.92e-02 0.0928 0.0544 0.597 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -196499 sc-eQTL 2.61e-01 -0.0898 0.0797 0.597 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -932637 sc-eQTL 4.70e-01 -0.0525 0.0725 0.597 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -697306 sc-eQTL 1.52e-01 -0.119 0.0825 0.597 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -793967 sc-eQTL 5.07e-01 -0.0523 0.0786 0.597 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.88e-01 -0.0837 0.0786 0.597 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -584529 sc-eQTL 8.69e-01 -0.0139 0.0842 0.597 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -584723 sc-eQTL 6.01e-01 -0.0301 0.0575 0.597 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -353732 sc-eQTL 2.73e-01 0.069 0.0628 0.597 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -45515 sc-eQTL 1.63e-01 -0.0981 0.0701 0.597 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -932637 sc-eQTL 5.72e-01 -0.0303 0.0535 0.597 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -6245 sc-eQTL 5.81e-01 -0.0449 0.0812 0.597 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -19434 sc-eQTL 2.95e-01 -0.0734 0.0699 0.597 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168528 SERINC2 -697306 eQTL 0.0272 0.0879 0.0397 0.0 0.0 0.361
ENSG00000186056 MATN1-AS1 -6245 eQTL 7.74e-02 -0.0229 0.013 0.0 0.00722 0.361

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162510 \N -11326 3.12e-05 2.13e-05 3.08e-06 1.06e-05 2.43e-06 1.05e-05 2.08e-05 2.46e-06 1.54e-05 7.84e-06 2.11e-05 8.32e-06 2.88e-05 7.53e-06 4.91e-06 9.46e-06 8.19e-06 1.52e-05 3.87e-06 4.12e-06 7.99e-06 1.67e-05 1.63e-05 3.85e-06 2.64e-05 5.34e-06 7.95e-06 6.04e-06 1.56e-05 1.49e-05 1.11e-05 9.64e-07 1.31e-06 3.78e-06 7.28e-06 2.81e-06 1.74e-06 2.73e-06 2.2e-06 1.5e-06 1.1e-06 2.33e-05 2.76e-06 1.79e-07 1.07e-06 1.96e-06 2.57e-06 7.75e-07 4.59e-07