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Genes within 1Mb (chr1:30701920:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -594868 sc-eQTL 4.34e-01 -0.0591 0.0754 0.491 B L1
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 3.33e-01 -0.0586 0.0604 0.491 B L1
ENSG00000134644 PUM1 -364071 sc-eQTL 9.52e-01 -0.00304 0.0507 0.491 B L1
ENSG00000162510 MATN1 -21665 sc-eQTL 3.95e-03 -0.152 0.0523 0.491 B L1
ENSG00000162511 LAPTM5 -55854 sc-eQTL 2.61e-01 0.047 0.0417 0.491 B L1
ENSG00000162517 PEF1 -942976 sc-eQTL 5.29e-01 0.0398 0.063 0.491 B L1
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 6.72e-01 -0.0208 0.0489 0.491 B L1
ENSG00000287510 AL137857.1 -29773 sc-eQTL 8.15e-01 0.0136 0.0579 0.491 B L1
ENSG00000060688 SNRNP40 -594868 sc-eQTL 5.27e-01 0.0408 0.0644 0.491 CD4T L1
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 9.33e-01 -0.00427 0.0504 0.491 CD4T L1
ENSG00000134644 PUM1 -364071 sc-eQTL 4.36e-01 -0.0349 0.0448 0.491 CD4T L1
ENSG00000162511 LAPTM5 -55854 sc-eQTL 6.85e-01 0.0202 0.0497 0.491 CD4T L1
ENSG00000162517 PEF1 -942976 sc-eQTL 8.61e-01 -0.00912 0.052 0.491 CD4T L1
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 4.61e-01 0.0328 0.0444 0.491 CD4T L1
ENSG00000287510 AL137857.1 -29773 sc-eQTL 5.41e-01 -0.0326 0.0532 0.491 CD4T L1
ENSG00000060688 SNRNP40 -594868 sc-eQTL 5.89e-01 0.046 0.085 0.491 CD8T L1
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 4.26e-01 -0.0451 0.0565 0.491 CD8T L1
ENSG00000134644 PUM1 -364071 sc-eQTL 5.64e-01 -0.0287 0.0498 0.491 CD8T L1
ENSG00000162511 LAPTM5 -55854 sc-eQTL 9.37e-01 0.0038 0.0484 0.491 CD8T L1
ENSG00000162517 PEF1 -942976 sc-eQTL 4.40e-01 -0.0461 0.0595 0.491 CD8T L1
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 6.51e-01 0.0257 0.0567 0.491 CD8T L1
ENSG00000287510 AL137857.1 -29773 sc-eQTL 9.24e-01 -0.00684 0.0712 0.491 CD8T L1
ENSG00000060688 SNRNP40 -594868 sc-eQTL 1.24e-01 -0.121 0.0782 0.5 DC L1
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 7.47e-01 -0.0301 0.0932 0.5 DC L1
ENSG00000134644 PUM1 -364071 sc-eQTL 2.37e-01 0.0863 0.0727 0.5 DC L1
ENSG00000162511 LAPTM5 -55854 sc-eQTL 1.31e-01 0.0787 0.0518 0.5 DC L1
ENSG00000162517 PEF1 -942976 sc-eQTL 8.29e-01 -0.0182 0.0845 0.5 DC L1
ENSG00000168528 SERINC2 -707645 sc-eQTL 9.28e-01 -0.00778 0.0859 0.5 DC L1
ENSG00000284543 LINC01226 -804306 sc-eQTL 6.18e-01 0.0284 0.0569 0.5 DC L1
ENSG00000287510 AL137857.1 -29773 sc-eQTL 1.25e-01 -0.126 0.0819 0.5 DC L1
ENSG00000060688 SNRNP40 -594868 sc-eQTL 4.90e-01 0.0412 0.0596 0.491 Mono L1
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 2.70e-01 -0.0816 0.0738 0.491 Mono L1
ENSG00000134644 PUM1 -364071 sc-eQTL 6.86e-01 0.0192 0.0474 0.491 Mono L1
ENSG00000162511 LAPTM5 -55854 sc-eQTL 9.38e-01 0.0034 0.0436 0.491 Mono L1
ENSG00000162512 SDC3 -206838 sc-eQTL 4.94e-01 -0.0574 0.0838 0.491 Mono L1
ENSG00000162517 PEF1 -942976 sc-eQTL 1.94e-01 -0.0763 0.0586 0.491 Mono L1
ENSG00000168528 SERINC2 -707645 sc-eQTL 3.48e-01 -0.0845 0.0898 0.491 Mono L1
ENSG00000284543 LINC01226 -804306 sc-eQTL 2.30e-01 0.0952 0.079 0.491 Mono L1
ENSG00000287510 AL137857.1 -29773 sc-eQTL 9.23e-01 0.00674 0.0693 0.491 Mono L1
ENSG00000060688 SNRNP40 -594868 sc-eQTL 1.40e-01 0.122 0.0822 0.491 NK L1
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 1.22e-01 -0.0873 0.0563 0.491 NK L1
ENSG00000134644 PUM1 -364071 sc-eQTL 4.73e-01 0.0426 0.0593 0.491 NK L1
ENSG00000162511 LAPTM5 -55854 sc-eQTL 7.28e-01 -0.0238 0.0683 0.491 NK L1
ENSG00000162517 PEF1 -942976 sc-eQTL 9.94e-01 0.000376 0.0499 0.491 NK L1
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 2.56e-01 0.0871 0.0765 0.491 NK L1
ENSG00000287510 AL137857.1 -29773 sc-eQTL 6.48e-01 0.0324 0.0708 0.491 NK L1
ENSG00000060688 SNRNP40 -594868 sc-eQTL 6.20e-01 0.0309 0.0624 0.491 Other_T L1
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 9.75e-01 -0.00207 0.0667 0.491 Other_T L1
ENSG00000134644 PUM1 -364071 sc-eQTL 2.52e-02 -0.134 0.0593 0.491 Other_T L1
ENSG00000162511 LAPTM5 -55854 sc-eQTL 8.15e-02 0.0854 0.0488 0.491 Other_T L1
ENSG00000162517 PEF1 -942976 sc-eQTL 1.16e-01 0.103 0.0653 0.491 Other_T L1
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 2.27e-01 0.0973 0.0802 0.491 Other_T L1
ENSG00000287510 AL137857.1 -29773 sc-eQTL 1.36e-01 -0.125 0.0834 0.491 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -594868 sc-eQTL 2.00e-01 0.125 0.0969 0.51 B_Activated L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 2.14e-01 0.122 0.0977 0.51 B_Activated L2
ENSG00000134644 PUM1 -364071 sc-eQTL 9.79e-01 -0.00242 0.0912 0.51 B_Activated L2
ENSG00000162510 MATN1 -21665 sc-eQTL 1.13e-01 -0.126 0.0792 0.51 B_Activated L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 9.70e-01 -0.00207 0.0556 0.51 B_Activated L2
ENSG00000162517 PEF1 -942976 sc-eQTL 1.29e-01 0.143 0.094 0.51 B_Activated L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 5.93e-01 0.0481 0.0897 0.51 B_Activated L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 3.07e-02 -0.171 0.0784 0.51 B_Activated L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 9.52e-01 0.00555 0.0931 0.491 B_Intermediate L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 8.54e-01 -0.0143 0.0775 0.491 B_Intermediate L2
ENSG00000134644 PUM1 -364071 sc-eQTL 5.11e-01 0.0482 0.0731 0.491 B_Intermediate L2
ENSG00000162510 MATN1 -21665 sc-eQTL 1.31e-01 0.115 0.0757 0.491 B_Intermediate L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 4.60e-01 0.0345 0.0467 0.491 B_Intermediate L2
ENSG00000162517 PEF1 -942976 sc-eQTL 5.46e-01 -0.0524 0.0867 0.491 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 3.37e-01 0.063 0.0654 0.491 B_Intermediate L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 9.02e-01 0.00907 0.0734 0.491 B_Intermediate L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 5.13e-01 0.06 0.0915 0.494 B_Memory L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 5.43e-01 0.0514 0.0843 0.494 B_Memory L2
ENSG00000134644 PUM1 -364071 sc-eQTL 3.12e-01 0.0743 0.0733 0.494 B_Memory L2
ENSG00000162510 MATN1 -21665 sc-eQTL 8.86e-01 -0.0101 0.0703 0.494 B_Memory L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 3.59e-01 0.0571 0.0622 0.494 B_Memory L2
ENSG00000162517 PEF1 -942976 sc-eQTL 7.97e-01 0.0214 0.0832 0.494 B_Memory L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 6.48e-01 0.0326 0.0713 0.494 B_Memory L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 6.78e-01 0.0347 0.0835 0.494 B_Memory L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 8.49e-01 -0.0156 0.0821 0.491 B_Naive1 L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 4.13e-01 0.0581 0.0708 0.491 B_Naive1 L2
ENSG00000134644 PUM1 -364071 sc-eQTL 6.71e-01 -0.0266 0.0625 0.491 B_Naive1 L2
ENSG00000162510 MATN1 -21665 sc-eQTL 1.08e-03 -0.205 0.0619 0.491 B_Naive1 L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 4.07e-01 0.0351 0.0423 0.491 B_Naive1 L2
ENSG00000162517 PEF1 -942976 sc-eQTL 6.93e-01 0.0295 0.0747 0.491 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 5.81e-01 -0.0308 0.0556 0.491 B_Naive1 L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 6.57e-02 0.126 0.0682 0.491 B_Naive1 L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 1.81e-01 -0.118 0.0878 0.491 B_Naive2 L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 1.01e-06 -0.346 0.0687 0.491 B_Naive2 L2
ENSG00000134644 PUM1 -364071 sc-eQTL 2.12e-01 -0.0889 0.071 0.491 B_Naive2 L2
ENSG00000162510 MATN1 -21665 sc-eQTL 1.85e-01 -0.0906 0.0681 0.491 B_Naive2 L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 4.87e-01 0.0323 0.0464 0.491 B_Naive2 L2
ENSG00000162517 PEF1 -942976 sc-eQTL 9.94e-01 0.000629 0.0845 0.491 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 7.30e-01 0.0233 0.0676 0.491 B_Naive2 L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 1.48e-01 -0.105 0.0727 0.491 B_Naive2 L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 9.15e-01 -0.0092 0.0863 0.493 CD4_CTL L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 9.93e-01 0.000785 0.0849 0.493 CD4_CTL L2
ENSG00000134644 PUM1 -364071 sc-eQTL 2.16e-01 0.103 0.0829 0.493 CD4_CTL L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 8.07e-01 -0.0181 0.0742 0.493 CD4_CTL L2
ENSG00000162517 PEF1 -942976 sc-eQTL 8.95e-01 -0.0101 0.0761 0.493 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 1.92e-01 0.106 0.0808 0.493 CD4_CTL L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 8.04e-01 -0.0178 0.0716 0.493 CD4_CTL L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 6.84e-01 -0.0277 0.0678 0.491 CD4_Naive L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 5.08e-01 -0.0399 0.0601 0.491 CD4_Naive L2
ENSG00000134644 PUM1 -364071 sc-eQTL 4.28e-01 -0.0381 0.048 0.491 CD4_Naive L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 7.28e-01 0.0179 0.0515 0.491 CD4_Naive L2
ENSG00000162517 PEF1 -942976 sc-eQTL 7.54e-01 -0.0177 0.0564 0.491 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 6.00e-01 -0.0274 0.0522 0.491 CD4_Naive L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 4.43e-01 0.0461 0.0599 0.491 CD4_Naive L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 1.41e-01 0.125 0.0846 0.491 CD4_TCM L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 9.98e-01 0.000141 0.0686 0.491 CD4_TCM L2
ENSG00000134644 PUM1 -364071 sc-eQTL 8.00e-01 -0.0154 0.0607 0.491 CD4_TCM L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 3.49e-01 0.0471 0.0502 0.491 CD4_TCM L2
ENSG00000162517 PEF1 -942976 sc-eQTL 7.76e-01 0.0192 0.0675 0.491 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 1.64e-01 0.0888 0.0636 0.491 CD4_TCM L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 4.57e-02 -0.142 0.0705 0.491 CD4_TCM L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 4.86e-01 0.0588 0.0843 0.491 CD4_TEM L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 3.23e-01 0.0796 0.0803 0.491 CD4_TEM L2
ENSG00000134644 PUM1 -364071 sc-eQTL 9.42e-01 -0.0049 0.067 0.491 CD4_TEM L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 6.97e-01 0.0264 0.0678 0.491 CD4_TEM L2
ENSG00000162517 PEF1 -942976 sc-eQTL 6.26e-01 -0.0371 0.0759 0.491 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 7.00e-01 0.0306 0.0793 0.491 CD4_TEM L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 7.00e-01 0.0302 0.0781 0.491 CD4_TEM L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 7.07e-01 -0.0353 0.0936 0.491 CD8_CTL L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 2.66e-02 -0.158 0.071 0.491 CD8_CTL L2
ENSG00000134644 PUM1 -364071 sc-eQTL 3.27e-01 0.0683 0.0696 0.491 CD8_CTL L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 6.67e-01 -0.0332 0.0772 0.491 CD8_CTL L2
ENSG00000162517 PEF1 -942976 sc-eQTL 8.66e-01 -0.0113 0.0672 0.491 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 7.89e-01 -0.0218 0.0811 0.491 CD8_CTL L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 3.68e-01 -0.0687 0.0762 0.491 CD8_CTL L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 1.32e-01 0.128 0.0846 0.491 CD8_Naive L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 7.50e-01 0.0234 0.0734 0.491 CD8_Naive L2
ENSG00000134644 PUM1 -364071 sc-eQTL 7.91e-02 -0.103 0.0586 0.491 CD8_Naive L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 2.58e-01 0.0639 0.0564 0.491 CD8_Naive L2
ENSG00000162517 PEF1 -942976 sc-eQTL 9.99e-01 -8.87e-05 0.0787 0.491 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 2.47e-01 0.0818 0.0704 0.491 CD8_Naive L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 1.09e-01 0.123 0.0764 0.491 CD8_Naive L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 7.13e-01 0.0356 0.0964 0.486 CD8_TCM L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 3.78e-01 0.0779 0.0882 0.486 CD8_TCM L2
ENSG00000134644 PUM1 -364071 sc-eQTL 2.65e-01 -0.0927 0.0828 0.486 CD8_TCM L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 6.24e-01 -0.0427 0.0869 0.486 CD8_TCM L2
ENSG00000162517 PEF1 -942976 sc-eQTL 2.39e-01 -0.105 0.0886 0.486 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 7.99e-01 0.0205 0.0805 0.486 CD8_TCM L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 3.34e-01 0.0787 0.0812 0.486 CD8_TCM L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 8.70e-01 0.0147 0.0897 0.489 CD8_TEM L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 3.64e-01 0.0781 0.0858 0.489 CD8_TEM L2
ENSG00000134644 PUM1 -364071 sc-eQTL 5.11e-01 -0.0578 0.0878 0.489 CD8_TEM L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 7.23e-01 -0.0293 0.0826 0.489 CD8_TEM L2
ENSG00000162517 PEF1 -942976 sc-eQTL 3.64e-01 -0.0706 0.0776 0.489 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 1.00e-01 -0.141 0.0852 0.489 CD8_TEM L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 9.97e-02 -0.128 0.0771 0.489 CD8_TEM L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 4.49e-01 0.0683 0.09 0.489 MAIT L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 1.92e-01 0.104 0.0796 0.489 MAIT L2
ENSG00000134644 PUM1 -364071 sc-eQTL 3.19e-01 -0.0764 0.0764 0.489 MAIT L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 3.75e-01 0.0641 0.0721 0.489 MAIT L2
ENSG00000162517 PEF1 -942976 sc-eQTL 4.98e-01 0.0538 0.0793 0.489 MAIT L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 4.51e-01 0.0607 0.0803 0.489 MAIT L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 3.70e-02 -0.172 0.0821 0.489 MAIT L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 1.67e-01 0.128 0.0924 0.496 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 7.24e-02 -0.14 0.0778 0.496 NK_CD56bright L2
ENSG00000134644 PUM1 -364071 sc-eQTL 3.84e-01 0.0717 0.0822 0.496 NK_CD56bright L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 1.92e-01 0.106 0.0809 0.496 NK_CD56bright L2
ENSG00000162517 PEF1 -942976 sc-eQTL 8.05e-01 -0.0195 0.0789 0.496 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 4.42e-01 -0.0628 0.0815 0.496 NK_CD56bright L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 7.17e-01 0.0292 0.0804 0.496 NK_CD56bright L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 6.15e-01 0.0447 0.0887 0.494 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 4.20e-02 -0.133 0.065 0.494 NK_CD56dim L2
ENSG00000134644 PUM1 -364071 sc-eQTL 9.76e-01 -0.00207 0.0673 0.494 NK_CD56dim L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 2.92e-01 -0.0756 0.0716 0.494 NK_CD56dim L2
ENSG00000162517 PEF1 -942976 sc-eQTL 3.98e-01 -0.054 0.0638 0.494 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 2.36e-01 0.106 0.0896 0.494 NK_CD56dim L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 5.78e-01 0.0413 0.0742 0.494 NK_CD56dim L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 7.93e-01 0.0247 0.0941 0.5 NK_HLA L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 1.77e-02 0.198 0.0828 0.5 NK_HLA L2
ENSG00000134644 PUM1 -364071 sc-eQTL 3.44e-01 0.0774 0.0817 0.5 NK_HLA L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 3.36e-01 0.0752 0.078 0.5 NK_HLA L2
ENSG00000162517 PEF1 -942976 sc-eQTL 7.25e-01 -0.031 0.088 0.5 NK_HLA L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 7.28e-01 0.029 0.0831 0.5 NK_HLA L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 4.20e-01 -0.0648 0.0802 0.5 NK_HLA L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 9.51e-01 0.00531 0.0862 0.494 NK_cytokine L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 7.32e-01 -0.0231 0.0672 0.494 NK_cytokine L2
ENSG00000134644 PUM1 -364071 sc-eQTL 2.36e-01 0.0862 0.0725 0.494 NK_cytokine L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 8.99e-01 -0.0102 0.0801 0.494 NK_cytokine L2
ENSG00000162517 PEF1 -942976 sc-eQTL 9.24e-01 0.00651 0.0682 0.494 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 4.41e-01 0.0654 0.0847 0.494 NK_cytokine L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 8.90e-01 -0.011 0.0789 0.494 NK_cytokine L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 4.56e-01 0.076 0.102 0.478 PB L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 6.91e-01 -0.0471 0.118 0.478 PB L2
ENSG00000134644 PUM1 -364071 sc-eQTL 3.92e-01 -0.0878 0.102 0.478 PB L2
ENSG00000162510 MATN1 -21665 sc-eQTL 5.50e-01 0.0573 0.0955 0.478 PB L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 9.01e-01 0.00851 0.0683 0.478 PB L2
ENSG00000162517 PEF1 -942976 sc-eQTL 4.13e-01 -0.0861 0.105 0.478 PB L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 1.72e-01 0.127 0.0927 0.478 PB L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 5.37e-01 -0.0615 0.0993 0.478 PB L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 8.83e-02 -0.113 0.0662 0.487 Pro_T L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 3.48e-01 -0.0793 0.0844 0.487 Pro_T L2
ENSG00000134644 PUM1 -364071 sc-eQTL 9.65e-02 -0.131 0.0784 0.487 Pro_T L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 5.32e-01 0.0354 0.0565 0.487 Pro_T L2
ENSG00000162517 PEF1 -942976 sc-eQTL 5.24e-01 0.0529 0.083 0.487 Pro_T L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 7.12e-01 -0.0292 0.0791 0.487 Pro_T L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 1.71e-01 -0.0995 0.0724 0.487 Pro_T L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 9.98e-01 -0.000176 0.0879 0.491 Treg L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 5.63e-01 0.0492 0.085 0.491 Treg L2
ENSG00000134644 PUM1 -364071 sc-eQTL 9.38e-01 0.00533 0.0681 0.491 Treg L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 9.97e-01 -0.000262 0.0779 0.491 Treg L2
ENSG00000162517 PEF1 -942976 sc-eQTL 9.46e-01 0.00568 0.0842 0.491 Treg L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 3.93e-02 0.163 0.0786 0.491 Treg L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 7.96e-01 -0.0205 0.0793 0.491 Treg L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 4.33e-01 -0.071 0.0903 0.505 cDC L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 9.65e-01 -0.00426 0.098 0.505 cDC L2
ENSG00000134644 PUM1 -364071 sc-eQTL 4.83e-01 0.0591 0.084 0.505 cDC L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 4.23e-01 0.0473 0.0589 0.505 cDC L2
ENSG00000162517 PEF1 -942976 sc-eQTL 8.41e-01 0.0172 0.0854 0.505 cDC L2
ENSG00000168528 SERINC2 -707645 sc-eQTL 4.76e-01 -0.054 0.0756 0.505 cDC L2
ENSG00000284543 LINC01226 -804306 sc-eQTL 7.86e-03 0.196 0.073 0.505 cDC L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 7.99e-02 -0.14 0.0794 0.505 cDC L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 5.34e-01 0.0448 0.0719 0.491 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 3.76e-01 -0.071 0.0801 0.491 cMono_IL1B L2
ENSG00000134644 PUM1 -364071 sc-eQTL 3.96e-01 0.0461 0.0542 0.491 cMono_IL1B L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 8.57e-01 -0.0086 0.0476 0.491 cMono_IL1B L2
ENSG00000162512 SDC3 -206838 sc-eQTL 2.72e-01 -0.0986 0.0895 0.491 cMono_IL1B L2
ENSG00000162517 PEF1 -942976 sc-eQTL 8.52e-01 0.0137 0.0733 0.491 cMono_IL1B L2
ENSG00000168528 SERINC2 -707645 sc-eQTL 5.75e-01 -0.051 0.0908 0.491 cMono_IL1B L2
ENSG00000284543 LINC01226 -804306 sc-eQTL 8.50e-02 0.138 0.0798 0.491 cMono_IL1B L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 9.61e-01 -0.00365 0.0749 0.491 cMono_IL1B L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 7.51e-01 0.0243 0.0763 0.491 cMono_S100A L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 6.29e-01 0.0436 0.0901 0.491 cMono_S100A L2
ENSG00000134644 PUM1 -364071 sc-eQTL 8.80e-01 -0.00984 0.0651 0.491 cMono_S100A L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 9.68e-01 0.00199 0.0501 0.491 cMono_S100A L2
ENSG00000162512 SDC3 -206838 sc-eQTL 6.47e-01 0.0396 0.0864 0.491 cMono_S100A L2
ENSG00000162517 PEF1 -942976 sc-eQTL 1.33e-01 -0.117 0.0777 0.491 cMono_S100A L2
ENSG00000168528 SERINC2 -707645 sc-eQTL 4.82e-01 -0.0644 0.0915 0.491 cMono_S100A L2
ENSG00000284543 LINC01226 -804306 sc-eQTL 5.39e-01 0.0458 0.0743 0.491 cMono_S100A L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 9.97e-01 0.000245 0.0747 0.491 cMono_S100A L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 5.69e-01 0.0651 0.114 0.485 gdT L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 6.12e-01 0.0498 0.098 0.485 gdT L2
ENSG00000134644 PUM1 -364071 sc-eQTL 5.58e-01 0.0593 0.101 0.485 gdT L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 6.30e-01 -0.053 0.11 0.485 gdT L2
ENSG00000162517 PEF1 -942976 sc-eQTL 9.07e-01 -0.0118 0.101 0.485 gdT L2
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 8.19e-01 0.0232 0.101 0.485 gdT L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 5.21e-01 -0.0631 0.0981 0.485 gdT L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 3.08e-01 0.0858 0.0839 0.498 intMono L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 1.31e-01 -0.136 0.09 0.498 intMono L2
ENSG00000134644 PUM1 -364071 sc-eQTL 9.92e-01 -0.000727 0.0768 0.498 intMono L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 1.40e-01 0.0888 0.0599 0.498 intMono L2
ENSG00000162512 SDC3 -206838 sc-eQTL 5.25e-01 -0.0525 0.0824 0.498 intMono L2
ENSG00000162517 PEF1 -942976 sc-eQTL 8.86e-01 -0.0125 0.0866 0.498 intMono L2
ENSG00000168528 SERINC2 -707645 sc-eQTL 2.73e-02 -0.19 0.0853 0.498 intMono L2
ENSG00000284543 LINC01226 -804306 sc-eQTL 9.23e-01 0.00788 0.0818 0.498 intMono L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 5.10e-01 0.0539 0.0817 0.498 intMono L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 5.48e-01 0.0474 0.0788 0.495 ncMono L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 6.68e-01 -0.036 0.084 0.495 ncMono L2
ENSG00000134644 PUM1 -364071 sc-eQTL 7.15e-01 0.0251 0.0687 0.495 ncMono L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 7.11e-01 0.0231 0.0624 0.495 ncMono L2
ENSG00000162512 SDC3 -206838 sc-eQTL 9.60e-02 -0.116 0.0695 0.495 ncMono L2
ENSG00000162517 PEF1 -942976 sc-eQTL 6.84e-01 0.0327 0.0802 0.495 ncMono L2
ENSG00000168528 SERINC2 -707645 sc-eQTL 7.15e-01 -0.0279 0.0763 0.495 ncMono L2
ENSG00000284543 LINC01226 -804306 sc-eQTL 7.17e-01 -0.0277 0.0762 0.495 ncMono L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 2.10e-01 -0.0991 0.0788 0.495 ncMono L2
ENSG00000060688 SNRNP40 -594868 sc-eQTL 4.26e-01 -0.0693 0.0869 0.497 pDC L2
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 8.50e-01 0.0181 0.0956 0.497 pDC L2
ENSG00000134644 PUM1 -364071 sc-eQTL 4.43e-01 0.0609 0.0791 0.497 pDC L2
ENSG00000162511 LAPTM5 -55854 sc-eQTL 2.42e-01 0.0862 0.0734 0.497 pDC L2
ENSG00000162517 PEF1 -942976 sc-eQTL 5.64e-01 -0.0553 0.0955 0.497 pDC L2
ENSG00000168528 SERINC2 -707645 sc-eQTL 8.41e-01 0.018 0.0894 0.497 pDC L2
ENSG00000284543 LINC01226 -804306 sc-eQTL 6.12e-01 -0.0352 0.0693 0.497 pDC L2
ENSG00000287510 AL137857.1 -29773 sc-eQTL 8.12e-01 -0.0194 0.0816 0.497 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -594868 sc-eQTL 3.01e-01 0.0911 0.0879 0.491 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 7.68e-01 0.0216 0.0733 0.491 B_Memory LOneK1K
ENSG00000134644 PUM1 -364071 sc-eQTL 2.55e-01 0.0739 0.0648 0.491 B_Memory LOneK1K
ENSG00000162510 MATN1 -21665 sc-eQTL 5.13e-01 0.0485 0.074 0.491 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -55854 sc-eQTL 8.32e-02 0.0805 0.0462 0.491 B_Memory LOneK1K
ENSG00000162517 PEF1 -942976 sc-eQTL 7.48e-01 -0.0248 0.0771 0.491 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 2.17e-01 0.076 0.0614 0.491 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -29773 sc-eQTL 4.09e-01 -0.0554 0.067 0.491 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -594868 sc-eQTL 2.29e-01 -0.0964 0.0798 0.491 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 8.34e-02 -0.109 0.0629 0.491 B_Naive LOneK1K
ENSG00000134644 PUM1 -364071 sc-eQTL 4.13e-01 -0.0491 0.0598 0.491 B_Naive LOneK1K
ENSG00000162510 MATN1 -21665 sc-eQTL 6.05e-04 -0.195 0.0561 0.491 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -55854 sc-eQTL 4.53e-01 0.0305 0.0406 0.491 B_Naive LOneK1K
ENSG00000162517 PEF1 -942976 sc-eQTL 9.73e-01 0.00255 0.0742 0.491 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 5.13e-01 -0.0343 0.0524 0.491 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -29773 sc-eQTL 3.47e-01 0.0586 0.0622 0.491 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -594868 sc-eQTL 8.06e-01 0.0169 0.0685 0.491 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 5.87e-01 -0.0422 0.0775 0.491 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -364071 sc-eQTL 5.33e-01 0.0309 0.0494 0.491 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -55854 sc-eQTL 8.60e-01 -0.00769 0.0435 0.491 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -206838 sc-eQTL 5.37e-01 -0.0548 0.0887 0.491 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -942976 sc-eQTL 4.24e-01 -0.0499 0.0623 0.491 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -707645 sc-eQTL 4.42e-01 -0.0703 0.0912 0.491 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -804306 sc-eQTL 8.56e-02 0.128 0.0743 0.491 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -29773 sc-eQTL 7.96e-01 0.0181 0.0701 0.491 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -594868 sc-eQTL 1.69e-01 0.103 0.0746 0.494 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 1.04e-01 -0.133 0.0815 0.494 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -364071 sc-eQTL 9.94e-01 0.000524 0.0672 0.494 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -55854 sc-eQTL 3.53e-01 0.0499 0.0536 0.494 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -206838 sc-eQTL 3.48e-01 -0.0737 0.0784 0.494 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -942976 sc-eQTL 4.51e-01 -0.0539 0.0712 0.494 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -707645 sc-eQTL 8.29e-02 -0.141 0.0808 0.494 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -804306 sc-eQTL 9.29e-01 -0.00687 0.0773 0.494 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -29773 sc-eQTL 8.69e-01 -0.0127 0.0774 0.494 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -594868 sc-eQTL 2.46e-01 0.0967 0.0832 0.494 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -595062 sc-eQTL 3.10e-01 -0.0579 0.0569 0.494 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -364071 sc-eQTL 5.72e-01 0.0354 0.0624 0.494 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -55854 sc-eQTL 6.97e-01 -0.0273 0.0698 0.494 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -942976 sc-eQTL 9.70e-01 -0.00203 0.0531 0.494 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -16584 sc-eQTL 2.04e-01 0.102 0.0802 0.494 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -29773 sc-eQTL 6.47e-01 -0.0319 0.0695 0.494 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121766 ZCCHC17 -595062 eQTL 4.27e-02 0.0355 0.0175 0.0 0.0 0.463
ENSG00000162510 MATN1 -21665 eQTL 0.00209 0.0595 0.0193 0.00221 0.00191 0.463
ENSG00000162511 LAPTM5 -55854 eQTL 2.32e-07 -0.0506 0.00972 0.0 0.0 0.463
ENSG00000168528 SERINC2 -707645 eQTL 0.00681 0.103 0.0379 0.0 0.0 0.463

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162510 MATN1 -21665 1.73e-05 1.78e-05 4.1e-06 1.12e-05 4.03e-06 9.46e-06 2.6e-05 3.71e-06 1.87e-05 9.72e-06 2.45e-05 9.41e-06 3.39e-05 7.85e-06 5.37e-06 1.14e-05 1.08e-05 1.84e-05 6.31e-06 5.38e-06 9.95e-06 2e-05 2e-05 7.63e-06 3.02e-05 5.98e-06 8.21e-06 8.22e-06 2.16e-05 2.23e-05 1.29e-05 1.55e-06 2.45e-06 6.6e-06 8.41e-06 4.91e-06 2.98e-06 2.99e-06 4.46e-06 3.19e-06 1.78e-06 2.41e-05 2.7e-06 4.31e-07 2.32e-06 2.97e-06 3.63e-06 1.48e-06 1.55e-06
ENSG00000162511 LAPTM5 -55854 9.93e-06 9.76e-06 1.85e-06 5.54e-06 2.32e-06 4.71e-06 1.17e-05 2.16e-06 1.01e-05 5.61e-06 1.33e-05 5.74e-06 1.62e-05 3.68e-06 3.33e-06 6.73e-06 5.45e-06 9.58e-06 3.2e-06 3.14e-06 6.52e-06 1.03e-05 9.78e-06 3.66e-06 1.55e-05 4.32e-06 6.02e-06 4.73e-06 1.22e-05 1.03e-05 5.94e-06 1.06e-06 1.32e-06 3.72e-06 4.62e-06 2.84e-06 1.77e-06 2.04e-06 2.13e-06 1.3e-06 1.48e-06 1.3e-05 1.38e-06 2.96e-07 1.38e-06 1.72e-06 1.94e-06 7.41e-07 6.07e-07