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Genes within 1Mb (chr1:30691873:T:TCTGA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -604915 sc-eQTL 6.00e-01 -0.0414 0.0787 0.363 B L1
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 4.26e-02 -0.127 0.0625 0.363 B L1
ENSG00000134644 PUM1 -374118 sc-eQTL 7.24e-01 0.0187 0.0529 0.363 B L1
ENSG00000162510 MATN1 -31712 sc-eQTL 3.80e-01 -0.0489 0.0556 0.363 B L1
ENSG00000162511 LAPTM5 -65901 sc-eQTL 9.01e-02 0.0737 0.0433 0.363 B L1
ENSG00000162517 PEF1 -953023 sc-eQTL 1.41e-01 0.0966 0.0655 0.363 B L1
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 9.10e-01 0.00581 0.0511 0.363 B L1
ENSG00000287510 AL137857.1 -39820 sc-eQTL 9.65e-02 0.1 0.0601 0.363 B L1
ENSG00000060688 SNRNP40 -604915 sc-eQTL 1.35e-01 0.103 0.0688 0.363 CD4T L1
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 3.21e-01 0.0536 0.0539 0.363 CD4T L1
ENSG00000134644 PUM1 -374118 sc-eQTL 1.30e-01 -0.0727 0.0478 0.363 CD4T L1
ENSG00000162511 LAPTM5 -65901 sc-eQTL 4.40e-01 0.0412 0.0532 0.363 CD4T L1
ENSG00000162517 PEF1 -953023 sc-eQTL 8.65e-01 0.00948 0.0557 0.363 CD4T L1
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 9.40e-01 0.0036 0.0477 0.363 CD4T L1
ENSG00000287510 AL137857.1 -39820 sc-eQTL 9.49e-01 -0.00363 0.0571 0.363 CD4T L1
ENSG00000060688 SNRNP40 -604915 sc-eQTL 6.72e-01 0.039 0.092 0.363 CD8T L1
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 8.79e-02 -0.104 0.0608 0.363 CD8T L1
ENSG00000134644 PUM1 -374118 sc-eQTL 4.33e-01 0.0423 0.0538 0.363 CD8T L1
ENSG00000162511 LAPTM5 -65901 sc-eQTL 8.98e-01 0.00671 0.0524 0.363 CD8T L1
ENSG00000162517 PEF1 -953023 sc-eQTL 2.12e-01 -0.0805 0.0643 0.363 CD8T L1
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 9.46e-01 0.00418 0.0614 0.363 CD8T L1
ENSG00000287510 AL137857.1 -39820 sc-eQTL 8.99e-01 0.00981 0.0771 0.363 CD8T L1
ENSG00000060688 SNRNP40 -604915 sc-eQTL 2.29e-01 -0.0962 0.0797 0.363 DC L1
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 1.86e-01 -0.125 0.0944 0.363 DC L1
ENSG00000134644 PUM1 -374118 sc-eQTL 8.04e-01 -0.0184 0.0742 0.363 DC L1
ENSG00000162511 LAPTM5 -65901 sc-eQTL 9.41e-02 0.0886 0.0526 0.363 DC L1
ENSG00000162517 PEF1 -953023 sc-eQTL 8.69e-01 -0.0142 0.0859 0.363 DC L1
ENSG00000168528 SERINC2 -717692 sc-eQTL 3.40e-01 0.0835 0.0872 0.363 DC L1
ENSG00000284543 LINC01226 -814353 sc-eQTL 9.07e-01 0.00674 0.0579 0.363 DC L1
ENSG00000287510 AL137857.1 -39820 sc-eQTL 2.24e-01 -0.102 0.0835 0.363 DC L1
ENSG00000060688 SNRNP40 -604915 sc-eQTL 1.24e-01 0.0952 0.0617 0.363 Mono L1
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 4.62e-01 0.0567 0.0768 0.363 Mono L1
ENSG00000134644 PUM1 -374118 sc-eQTL 3.60e-01 0.0451 0.0492 0.363 Mono L1
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.98e-01 -0.0116 0.0453 0.363 Mono L1
ENSG00000162512 SDC3 -216885 sc-eQTL 8.36e-02 -0.15 0.0866 0.363 Mono L1
ENSG00000162517 PEF1 -953023 sc-eQTL 8.03e-01 0.0152 0.0612 0.363 Mono L1
ENSG00000168528 SERINC2 -717692 sc-eQTL 9.44e-01 0.00657 0.0935 0.363 Mono L1
ENSG00000284543 LINC01226 -814353 sc-eQTL 7.45e-01 0.0268 0.0824 0.363 Mono L1
ENSG00000287510 AL137857.1 -39820 sc-eQTL 7.61e-01 0.022 0.072 0.363 Mono L1
ENSG00000060688 SNRNP40 -604915 sc-eQTL 2.54e-02 0.195 0.0867 0.361 NK L1
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 7.72e-02 -0.106 0.0596 0.361 NK L1
ENSG00000134644 PUM1 -374118 sc-eQTL 3.48e-01 0.0592 0.0629 0.361 NK L1
ENSG00000162511 LAPTM5 -65901 sc-eQTL 6.31e-01 0.0349 0.0725 0.361 NK L1
ENSG00000162517 PEF1 -953023 sc-eQTL 8.26e-01 0.0116 0.0529 0.361 NK L1
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 4.39e-01 0.0631 0.0814 0.361 NK L1
ENSG00000287510 AL137857.1 -39820 sc-eQTL 8.18e-01 -0.0173 0.0752 0.361 NK L1
ENSG00000060688 SNRNP40 -604915 sc-eQTL 7.59e-01 0.0199 0.0646 0.363 Other_T L1
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 1.91e-01 -0.0903 0.0687 0.363 Other_T L1
ENSG00000134644 PUM1 -374118 sc-eQTL 2.09e-02 -0.143 0.0613 0.363 Other_T L1
ENSG00000162511 LAPTM5 -65901 sc-eQTL 4.14e-02 0.103 0.0504 0.363 Other_T L1
ENSG00000162517 PEF1 -953023 sc-eQTL 3.17e-01 0.068 0.0678 0.363 Other_T L1
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 5.83e-01 0.0458 0.0832 0.363 Other_T L1
ENSG00000287510 AL137857.1 -39820 sc-eQTL 9.31e-01 -0.00752 0.0868 0.363 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -604915 sc-eQTL 8.32e-01 0.0223 0.105 0.37 B_Activated L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 5.86e-01 0.0578 0.106 0.37 B_Activated L2
ENSG00000134644 PUM1 -374118 sc-eQTL 1.39e-01 -0.145 0.0979 0.37 B_Activated L2
ENSG00000162510 MATN1 -31712 sc-eQTL 4.23e-01 -0.069 0.086 0.37 B_Activated L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 4.26e-01 0.0478 0.06 0.37 B_Activated L2
ENSG00000162517 PEF1 -953023 sc-eQTL 6.66e-02 0.187 0.101 0.37 B_Activated L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 1.83e-01 0.129 0.0965 0.37 B_Activated L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 5.21e-01 0.0551 0.0857 0.37 B_Activated L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 4.21e-01 -0.0777 0.0963 0.363 B_Intermediate L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 4.84e-01 -0.0563 0.0802 0.363 B_Intermediate L2
ENSG00000134644 PUM1 -374118 sc-eQTL 7.86e-01 0.0206 0.0758 0.363 B_Intermediate L2
ENSG00000162510 MATN1 -31712 sc-eQTL 4.50e-01 0.0595 0.0788 0.363 B_Intermediate L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 1.31e-01 0.0731 0.0482 0.363 B_Intermediate L2
ENSG00000162517 PEF1 -953023 sc-eQTL 6.30e-01 -0.0434 0.0898 0.363 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 2.06e-01 -0.0859 0.0677 0.363 B_Intermediate L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 9.78e-01 -0.00206 0.076 0.363 B_Intermediate L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 4.99e-01 -0.0644 0.0951 0.362 B_Memory L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 2.68e-01 0.0971 0.0874 0.362 B_Memory L2
ENSG00000134644 PUM1 -374118 sc-eQTL 6.64e-01 0.0332 0.0763 0.362 B_Memory L2
ENSG00000162510 MATN1 -31712 sc-eQTL 7.82e-01 -0.0202 0.073 0.362 B_Memory L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 4.70e-01 0.0467 0.0646 0.362 B_Memory L2
ENSG00000162517 PEF1 -953023 sc-eQTL 6.94e-01 0.034 0.0864 0.362 B_Memory L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 6.53e-01 0.0333 0.074 0.362 B_Memory L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 4.97e-01 0.059 0.0866 0.362 B_Memory L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 5.28e-02 0.166 0.0852 0.363 B_Naive1 L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 9.57e-01 -0.00399 0.0742 0.363 B_Naive1 L2
ENSG00000134644 PUM1 -374118 sc-eQTL 2.01e-01 0.0836 0.0652 0.363 B_Naive1 L2
ENSG00000162510 MATN1 -31712 sc-eQTL 8.10e-02 -0.116 0.066 0.363 B_Naive1 L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 3.36e-02 0.0939 0.0439 0.363 B_Naive1 L2
ENSG00000162517 PEF1 -953023 sc-eQTL 2.39e-02 0.176 0.0773 0.363 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 8.56e-01 -0.0106 0.0583 0.363 B_Naive1 L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 1.68e-01 0.0992 0.0717 0.363 B_Naive1 L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 6.20e-01 -0.0458 0.0922 0.361 B_Naive2 L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 1.47e-03 -0.24 0.0744 0.361 B_Naive2 L2
ENSG00000134644 PUM1 -374118 sc-eQTL 3.61e-02 -0.156 0.0738 0.361 B_Naive2 L2
ENSG00000162510 MATN1 -31712 sc-eQTL 9.05e-01 -0.00854 0.0716 0.361 B_Naive2 L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 8.19e-02 0.0844 0.0483 0.361 B_Naive2 L2
ENSG00000162517 PEF1 -953023 sc-eQTL 2.42e-01 0.103 0.0882 0.361 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 5.84e-01 0.0388 0.0707 0.361 B_Naive2 L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 8.38e-01 0.0156 0.0765 0.361 B_Naive2 L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 6.85e-01 0.0364 0.0895 0.368 CD4_CTL L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 4.57e-01 -0.0656 0.088 0.368 CD4_CTL L2
ENSG00000134644 PUM1 -374118 sc-eQTL 6.58e-01 0.0382 0.0863 0.368 CD4_CTL L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 8.89e-01 0.0107 0.077 0.368 CD4_CTL L2
ENSG00000162517 PEF1 -953023 sc-eQTL 7.11e-01 -0.0293 0.0789 0.368 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 7.91e-02 0.147 0.0836 0.368 CD4_CTL L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 6.90e-01 0.0296 0.0743 0.368 CD4_CTL L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 7.68e-01 0.0214 0.0723 0.363 CD4_Naive L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 6.45e-01 0.0296 0.0641 0.363 CD4_Naive L2
ENSG00000134644 PUM1 -374118 sc-eQTL 1.28e-01 -0.0777 0.0509 0.363 CD4_Naive L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 2.97e-01 0.0572 0.0547 0.363 CD4_Naive L2
ENSG00000162517 PEF1 -953023 sc-eQTL 2.72e-01 0.0661 0.06 0.363 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 5.47e-01 -0.0335 0.0556 0.363 CD4_Naive L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 2.20e-01 0.0784 0.0637 0.363 CD4_Naive L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 8.53e-02 0.157 0.091 0.363 CD4_TCM L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 8.90e-01 -0.0102 0.0739 0.363 CD4_TCM L2
ENSG00000134644 PUM1 -374118 sc-eQTL 9.81e-01 0.0016 0.0654 0.363 CD4_TCM L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 5.84e-01 -0.0297 0.0542 0.363 CD4_TCM L2
ENSG00000162517 PEF1 -953023 sc-eQTL 6.43e-01 -0.0337 0.0727 0.363 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 9.98e-01 0.000172 0.0688 0.363 CD4_TCM L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 2.69e-01 -0.0847 0.0764 0.363 CD4_TCM L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 3.71e-01 0.0817 0.0912 0.363 CD4_TEM L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 2.68e-01 0.0963 0.0868 0.363 CD4_TEM L2
ENSG00000134644 PUM1 -374118 sc-eQTL 5.77e-01 0.0405 0.0725 0.363 CD4_TEM L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 8.43e-01 0.0146 0.0733 0.363 CD4_TEM L2
ENSG00000162517 PEF1 -953023 sc-eQTL 4.95e-01 -0.0561 0.0821 0.363 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 6.18e-01 -0.0429 0.0858 0.363 CD4_TEM L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 2.57e-01 -0.0957 0.0843 0.363 CD4_TEM L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 5.87e-01 -0.0531 0.0976 0.363 CD8_CTL L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 7.00e-01 0.0289 0.0749 0.363 CD8_CTL L2
ENSG00000134644 PUM1 -374118 sc-eQTL 1.23e-01 0.112 0.0723 0.363 CD8_CTL L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.30e-01 0.0278 0.0805 0.363 CD8_CTL L2
ENSG00000162517 PEF1 -953023 sc-eQTL 9.89e-01 0.001 0.0701 0.363 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 5.34e-01 0.0527 0.0846 0.363 CD8_CTL L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 5.06e-01 -0.053 0.0795 0.363 CD8_CTL L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 7.90e-01 0.024 0.0903 0.363 CD8_Naive L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 8.94e-03 -0.202 0.0767 0.363 CD8_Naive L2
ENSG00000134644 PUM1 -374118 sc-eQTL 8.21e-01 -0.0142 0.0627 0.363 CD8_Naive L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 2.28e-01 0.0724 0.0599 0.363 CD8_Naive L2
ENSG00000162517 PEF1 -953023 sc-eQTL 7.97e-01 -0.0215 0.0835 0.363 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 2.74e-01 0.0821 0.0748 0.363 CD8_Naive L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 3.03e-01 0.0842 0.0814 0.363 CD8_Naive L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 7.71e-01 -0.0294 0.101 0.363 CD8_TCM L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 2.05e-01 0.117 0.0921 0.363 CD8_TCM L2
ENSG00000134644 PUM1 -374118 sc-eQTL 8.08e-01 -0.0212 0.087 0.363 CD8_TCM L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.17e-01 -0.033 0.091 0.363 CD8_TCM L2
ENSG00000162517 PEF1 -953023 sc-eQTL 3.30e-02 -0.198 0.092 0.363 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 8.57e-01 -0.0152 0.0843 0.363 CD8_TCM L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 9.59e-01 -0.00435 0.0852 0.363 CD8_TCM L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 9.66e-01 -0.00409 0.0958 0.356 CD8_TEM L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 3.00e-01 -0.0952 0.0916 0.356 CD8_TEM L2
ENSG00000134644 PUM1 -374118 sc-eQTL 1.63e-01 -0.131 0.0934 0.356 CD8_TEM L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 1.71e-01 0.121 0.0878 0.356 CD8_TEM L2
ENSG00000162517 PEF1 -953023 sc-eQTL 3.62e-01 -0.0758 0.0829 0.356 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 4.67e-01 -0.0667 0.0915 0.356 CD8_TEM L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 6.43e-01 -0.0385 0.0829 0.356 CD8_TEM L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 9.17e-01 0.00978 0.094 0.364 MAIT L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 5.02e-01 -0.056 0.0832 0.364 MAIT L2
ENSG00000134644 PUM1 -374118 sc-eQTL 6.59e-01 -0.0353 0.0798 0.364 MAIT L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 1.78e-01 0.101 0.075 0.364 MAIT L2
ENSG00000162517 PEF1 -953023 sc-eQTL 8.31e-01 0.0177 0.0827 0.364 MAIT L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 9.89e-01 -0.00116 0.0838 0.364 MAIT L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 7.91e-01 -0.023 0.0864 0.364 MAIT L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 2.21e-01 0.12 0.0978 0.364 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 3.13e-01 -0.0837 0.0827 0.364 NK_CD56bright L2
ENSG00000134644 PUM1 -374118 sc-eQTL 3.36e-02 0.184 0.0861 0.364 NK_CD56bright L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 5.45e-02 0.165 0.0851 0.364 NK_CD56bright L2
ENSG00000162517 PEF1 -953023 sc-eQTL 8.11e-01 0.02 0.0834 0.364 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 6.16e-01 -0.0434 0.0863 0.364 NK_CD56bright L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 6.68e-01 0.0366 0.085 0.364 NK_CD56bright L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 6.57e-01 0.0415 0.0931 0.362 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 4.64e-02 -0.137 0.0682 0.362 NK_CD56dim L2
ENSG00000134644 PUM1 -374118 sc-eQTL 9.15e-01 0.00751 0.0707 0.362 NK_CD56dim L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.98e-01 0.0193 0.0753 0.362 NK_CD56dim L2
ENSG00000162517 PEF1 -953023 sc-eQTL 6.22e-01 -0.033 0.067 0.362 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 5.06e-01 0.0628 0.0943 0.362 NK_CD56dim L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 6.57e-01 0.0346 0.0779 0.362 NK_CD56dim L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 1.00e+00 2.09e-05 0.0977 0.368 NK_HLA L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 1.04e-01 0.142 0.0867 0.368 NK_HLA L2
ENSG00000134644 PUM1 -374118 sc-eQTL 2.69e-01 -0.0941 0.0848 0.368 NK_HLA L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 8.53e-01 0.0151 0.0812 0.368 NK_HLA L2
ENSG00000162517 PEF1 -953023 sc-eQTL 9.87e-01 0.00147 0.0915 0.368 NK_HLA L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 2.59e-01 0.0975 0.0861 0.368 NK_HLA L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 8.15e-01 -0.0195 0.0835 0.368 NK_HLA L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 2.48e-01 0.105 0.0904 0.362 NK_cytokine L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 5.77e-01 -0.0396 0.0708 0.362 NK_cytokine L2
ENSG00000134644 PUM1 -374118 sc-eQTL 5.02e-01 0.0515 0.0765 0.362 NK_cytokine L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 4.63e-01 0.0618 0.0842 0.362 NK_cytokine L2
ENSG00000162517 PEF1 -953023 sc-eQTL 7.85e-01 -0.0196 0.0718 0.362 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 9.91e-01 -0.00101 0.0893 0.362 NK_cytokine L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 4.34e-01 0.0651 0.083 0.362 NK_cytokine L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 3.27e-01 0.105 0.107 0.359 PB L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 3.69e-01 -0.111 0.124 0.359 PB L2
ENSG00000134644 PUM1 -374118 sc-eQTL 5.80e-01 -0.0597 0.108 0.359 PB L2
ENSG00000162510 MATN1 -31712 sc-eQTL 8.31e-01 0.0215 0.1 0.359 PB L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.18e-01 -0.026 0.0717 0.359 PB L2
ENSG00000162517 PEF1 -953023 sc-eQTL 9.97e-01 0.000463 0.111 0.359 PB L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 9.48e-01 -0.00643 0.0982 0.359 PB L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 7.75e-01 -0.03 0.105 0.359 PB L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 5.82e-01 -0.0388 0.0704 0.365 Pro_T L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 8.84e-01 -0.0131 0.0894 0.365 Pro_T L2
ENSG00000134644 PUM1 -374118 sc-eQTL 3.36e-01 -0.0802 0.0832 0.365 Pro_T L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.08e-01 -0.0224 0.0598 0.365 Pro_T L2
ENSG00000162517 PEF1 -953023 sc-eQTL 4.07e-01 0.0728 0.0876 0.365 Pro_T L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 2.24e-02 -0.19 0.0825 0.365 Pro_T L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 4.51e-02 -0.153 0.0761 0.365 Pro_T L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 9.00e-01 0.0115 0.0919 0.363 Treg L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 9.47e-01 -0.00594 0.0889 0.363 Treg L2
ENSG00000134644 PUM1 -374118 sc-eQTL 9.26e-01 -0.00665 0.0712 0.363 Treg L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 6.18e-01 0.0407 0.0814 0.363 Treg L2
ENSG00000162517 PEF1 -953023 sc-eQTL 7.50e-01 0.028 0.088 0.363 Treg L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 5.73e-01 0.0469 0.083 0.363 Treg L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 6.27e-01 -0.0403 0.0829 0.363 Treg L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 7.02e-01 -0.0349 0.0911 0.371 cDC L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 4.80e-01 -0.0698 0.0985 0.371 cDC L2
ENSG00000134644 PUM1 -374118 sc-eQTL 4.63e-01 -0.0622 0.0846 0.371 cDC L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 2.34e-01 0.0707 0.0592 0.371 cDC L2
ENSG00000162517 PEF1 -953023 sc-eQTL 8.26e-01 0.0189 0.086 0.371 cDC L2
ENSG00000168528 SERINC2 -717692 sc-eQTL 2.09e-01 0.0957 0.0759 0.371 cDC L2
ENSG00000284543 LINC01226 -814353 sc-eQTL 8.54e-01 0.0138 0.0749 0.371 cDC L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 5.62e-01 -0.0468 0.0806 0.371 cDC L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 3.65e-02 0.154 0.0731 0.363 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 3.77e-01 0.0727 0.0822 0.363 cMono_IL1B L2
ENSG00000134644 PUM1 -374118 sc-eQTL 2.57e-01 0.0632 0.0556 0.363 cMono_IL1B L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 4.40e-01 -0.0378 0.0489 0.363 cMono_IL1B L2
ENSG00000162512 SDC3 -216885 sc-eQTL 2.79e-01 -0.0999 0.0919 0.363 cMono_IL1B L2
ENSG00000162517 PEF1 -953023 sc-eQTL 5.94e-01 0.0401 0.0753 0.363 cMono_IL1B L2
ENSG00000168528 SERINC2 -717692 sc-eQTL 7.06e-01 0.0353 0.0933 0.363 cMono_IL1B L2
ENSG00000284543 LINC01226 -814353 sc-eQTL 6.00e-01 0.0433 0.0824 0.363 cMono_IL1B L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 5.66e-01 0.0442 0.0769 0.363 cMono_IL1B L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 1.29e-01 0.118 0.0777 0.363 cMono_S100A L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 4.87e-01 0.0643 0.0922 0.363 cMono_S100A L2
ENSG00000134644 PUM1 -374118 sc-eQTL 5.26e-01 0.0424 0.0666 0.363 cMono_S100A L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 8.93e-01 0.00691 0.0513 0.363 cMono_S100A L2
ENSG00000162512 SDC3 -216885 sc-eQTL 7.31e-01 -0.0304 0.0885 0.363 cMono_S100A L2
ENSG00000162517 PEF1 -953023 sc-eQTL 4.37e-01 -0.0622 0.0798 0.363 cMono_S100A L2
ENSG00000168528 SERINC2 -717692 sc-eQTL 7.57e-01 0.029 0.0937 0.363 cMono_S100A L2
ENSG00000284543 LINC01226 -814353 sc-eQTL 5.00e-01 -0.0514 0.0761 0.363 cMono_S100A L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 4.12e-01 -0.0628 0.0764 0.363 cMono_S100A L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 4.52e-01 0.0873 0.116 0.382 gdT L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 8.59e-01 0.0177 0.0996 0.382 gdT L2
ENSG00000134644 PUM1 -374118 sc-eQTL 9.74e-01 -0.00336 0.103 0.382 gdT L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 9.02e-01 0.0138 0.112 0.382 gdT L2
ENSG00000162517 PEF1 -953023 sc-eQTL 5.20e-01 0.0657 0.102 0.382 gdT L2
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 8.82e-01 -0.0153 0.103 0.382 gdT L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 3.16e-01 -0.1 0.0994 0.382 gdT L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 7.85e-01 -0.0238 0.0868 0.36 intMono L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 9.01e-01 -0.0116 0.0933 0.36 intMono L2
ENSG00000134644 PUM1 -374118 sc-eQTL 5.62e-01 0.046 0.0791 0.36 intMono L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 5.90e-01 0.0335 0.0621 0.36 intMono L2
ENSG00000162512 SDC3 -216885 sc-eQTL 5.77e-02 -0.161 0.0843 0.36 intMono L2
ENSG00000162517 PEF1 -953023 sc-eQTL 6.79e-02 0.163 0.0886 0.36 intMono L2
ENSG00000168528 SERINC2 -717692 sc-eQTL 1.00e+00 -5.5e-05 0.089 0.36 intMono L2
ENSG00000284543 LINC01226 -814353 sc-eQTL 5.75e-01 0.0474 0.0843 0.36 intMono L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 4.48e-02 0.169 0.0836 0.36 intMono L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 5.26e-01 -0.0513 0.0808 0.367 ncMono L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 3.62e-01 0.0786 0.086 0.367 ncMono L2
ENSG00000134644 PUM1 -374118 sc-eQTL 7.47e-01 0.0227 0.0704 0.367 ncMono L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 5.34e-01 0.0398 0.0639 0.367 ncMono L2
ENSG00000162512 SDC3 -216885 sc-eQTL 4.05e-02 -0.146 0.071 0.367 ncMono L2
ENSG00000162517 PEF1 -953023 sc-eQTL 9.59e-02 0.137 0.0817 0.367 ncMono L2
ENSG00000168528 SERINC2 -717692 sc-eQTL 9.56e-01 0.00434 0.0783 0.367 ncMono L2
ENSG00000284543 LINC01226 -814353 sc-eQTL 4.51e-01 0.0589 0.0781 0.367 ncMono L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 7.86e-01 -0.022 0.0811 0.367 ncMono L2
ENSG00000060688 SNRNP40 -604915 sc-eQTL 1.09e-01 -0.144 0.0894 0.359 pDC L2
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 6.58e-01 -0.0439 0.0988 0.359 pDC L2
ENSG00000134644 PUM1 -374118 sc-eQTL 6.80e-01 0.0338 0.082 0.359 pDC L2
ENSG00000162511 LAPTM5 -65901 sc-eQTL 4.12e-01 0.0626 0.0761 0.359 pDC L2
ENSG00000162517 PEF1 -953023 sc-eQTL 8.53e-01 0.0183 0.0989 0.359 pDC L2
ENSG00000168528 SERINC2 -717692 sc-eQTL 8.37e-01 0.019 0.0924 0.359 pDC L2
ENSG00000284543 LINC01226 -814353 sc-eQTL 4.04e-01 -0.0599 0.0716 0.359 pDC L2
ENSG00000287510 AL137857.1 -39820 sc-eQTL 6.92e-01 -0.0335 0.0844 0.359 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -604915 sc-eQTL 6.16e-01 -0.046 0.0914 0.363 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 8.50e-01 -0.0144 0.0761 0.363 B_Memory LOneK1K
ENSG00000134644 PUM1 -374118 sc-eQTL 8.24e-01 0.015 0.0675 0.363 B_Memory LOneK1K
ENSG00000162510 MATN1 -31712 sc-eQTL 7.89e-01 -0.0206 0.0769 0.363 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -65901 sc-eQTL 3.62e-02 0.101 0.0478 0.363 B_Memory LOneK1K
ENSG00000162517 PEF1 -953023 sc-eQTL 4.56e-01 -0.0597 0.08 0.363 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 8.69e-01 0.0106 0.0639 0.363 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -39820 sc-eQTL 4.50e-01 0.0527 0.0696 0.363 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -604915 sc-eQTL 3.20e-01 0.0828 0.083 0.363 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 5.41e-02 -0.126 0.0652 0.363 B_Naive LOneK1K
ENSG00000134644 PUM1 -374118 sc-eQTL 8.39e-01 0.0126 0.0622 0.363 B_Naive LOneK1K
ENSG00000162510 MATN1 -31712 sc-eQTL 2.30e-01 -0.0719 0.0597 0.363 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -65901 sc-eQTL 2.86e-02 0.0919 0.0417 0.363 B_Naive LOneK1K
ENSG00000162517 PEF1 -953023 sc-eQTL 1.40e-02 0.188 0.0759 0.363 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 8.19e-01 -0.0125 0.0545 0.363 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -39820 sc-eQTL 1.27e-01 0.0986 0.0643 0.363 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -604915 sc-eQTL 4.31e-02 0.142 0.0696 0.363 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 2.36e-01 0.0943 0.0794 0.363 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -374118 sc-eQTL 1.48e-01 0.0734 0.0505 0.363 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.10e-01 -0.0166 0.0446 0.363 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -216885 sc-eQTL 4.89e-01 -0.063 0.091 0.363 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -953023 sc-eQTL 7.41e-01 -0.0212 0.064 0.363 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -717692 sc-eQTL 8.32e-01 0.0199 0.0937 0.363 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -814353 sc-eQTL 9.89e-01 0.00102 0.0768 0.363 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -39820 sc-eQTL 8.26e-01 0.0159 0.0719 0.363 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -604915 sc-eQTL 7.78e-01 -0.0219 0.0777 0.36 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 6.77e-01 -0.0355 0.085 0.36 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -374118 sc-eQTL 9.94e-01 0.000485 0.0697 0.36 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -65901 sc-eQTL 7.86e-01 0.0152 0.0557 0.36 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -216885 sc-eQTL 2.60e-02 -0.18 0.0804 0.36 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -953023 sc-eQTL 6.92e-02 0.134 0.0734 0.36 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -717692 sc-eQTL 8.11e-01 -0.0202 0.0844 0.36 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -814353 sc-eQTL 4.14e-01 0.0655 0.08 0.36 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -39820 sc-eQTL 7.00e-01 0.0309 0.0802 0.36 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -604915 sc-eQTL 6.21e-02 0.164 0.0874 0.362 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -605109 sc-eQTL 1.17e-01 -0.0942 0.0599 0.362 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -374118 sc-eQTL 6.85e-01 0.0268 0.066 0.362 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -65901 sc-eQTL 9.00e-01 0.0093 0.0737 0.362 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -953023 sc-eQTL 7.70e-01 -0.0164 0.056 0.362 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -26631 sc-eQTL 3.54e-01 0.0789 0.0849 0.362 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -39820 sc-eQTL 9.54e-01 -0.00427 0.0734 0.362 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -65901 eQTL 0.0011 -0.0332 0.0101 0.0 0.0 0.386

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -65901 3.75e-05 5.07e-06 9.8e-07 6.13e-06 6.17e-07 5.2e-06 9.53e-06 4.13e-07 3.14e-06 1.18e-06 5.02e-06 1.86e-06 7.07e-06 1.4e-06 3.84e-07 2.54e-06 1.97e-06 3.84e-06 9.83e-07 1.36e-06 2.86e-06 4.91e-06 4.76e-06 1.66e-06 5.3e-06 1.67e-06 1.79e-06 1.81e-06 6.43e-06 4.23e-06 1.94e-06 6.58e-08 3.9e-07 1.84e-06 2.4e-06 9.54e-07 8.03e-07 2.03e-07 5.05e-07 3.74e-07 1.35e-07 2.21e-05 2.81e-06 1.66e-07 3.69e-07 3.19e-07 7.59e-07 3.09e-09 6.14e-08
ENSG00000237329 \N -344861 1.33e-06 2.3e-07 6.86e-08 3.19e-07 9.24e-08 3.24e-07 7.25e-07 5.33e-08 1.5e-07 6.4e-08 3.32e-07 1.31e-07 4.11e-07 8.13e-08 5.55e-08 7.97e-08 3.93e-08 4.22e-07 7.09e-08 4.42e-08 1.61e-07 1.9e-07 3.03e-07 2.95e-08 2.17e-07 1.25e-07 1.19e-07 9.57e-08 2.78e-07 1.89e-07 1.27e-07 3.19e-08 2.74e-08 1.02e-07 5.5e-08 2.74e-08 5.06e-08 8.91e-08 8e-08 3.55e-08 3.66e-08 1.48e-06 2.89e-08 7.56e-09 5.7e-08 1.69e-08 1.19e-07 4.82e-09 4.61e-08