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Genes within 1Mb (chr1:30691320:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -605468 sc-eQTL 2.08e-01 0.0951 0.0753 0.549 B L1
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 2.07e-01 -0.0763 0.0603 0.549 B L1
ENSG00000134644 PUM1 -374671 sc-eQTL 6.11e-01 -0.0259 0.0508 0.549 B L1
ENSG00000162510 MATN1 -32265 sc-eQTL 1.75e-01 -0.0723 0.0532 0.549 B L1
ENSG00000162511 LAPTM5 -66454 sc-eQTL 1.79e-01 0.0562 0.0416 0.549 B L1
ENSG00000162517 PEF1 -953576 sc-eQTL 2.19e-01 0.0775 0.0629 0.549 B L1
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 5.66e-01 0.0281 0.049 0.549 B L1
ENSG00000287510 AL137857.1 -40373 sc-eQTL 1.94e-01 0.0752 0.0578 0.549 B L1
ENSG00000060688 SNRNP40 -605468 sc-eQTL 1.30e-01 0.0987 0.0649 0.549 CD4T L1
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 7.99e-01 0.013 0.051 0.549 CD4T L1
ENSG00000134644 PUM1 -374671 sc-eQTL 4.09e-01 -0.0375 0.0453 0.549 CD4T L1
ENSG00000162511 LAPTM5 -66454 sc-eQTL 1.30e-01 0.0762 0.05 0.549 CD4T L1
ENSG00000162517 PEF1 -953576 sc-eQTL 4.83e-01 -0.0369 0.0526 0.549 CD4T L1
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 1.24e-01 0.0691 0.0448 0.549 CD4T L1
ENSG00000287510 AL137857.1 -40373 sc-eQTL 8.65e-01 -0.00917 0.0539 0.549 CD4T L1
ENSG00000060688 SNRNP40 -605468 sc-eQTL 6.20e-02 0.163 0.0867 0.549 CD8T L1
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 3.28e-01 -0.0569 0.058 0.549 CD8T L1
ENSG00000134644 PUM1 -374671 sc-eQTL 7.52e-01 0.0162 0.0512 0.549 CD8T L1
ENSG00000162511 LAPTM5 -66454 sc-eQTL 8.91e-01 -0.0068 0.0497 0.549 CD8T L1
ENSG00000162517 PEF1 -953576 sc-eQTL 9.31e-01 -0.00533 0.0613 0.549 CD8T L1
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 4.28e-01 0.0463 0.0582 0.549 CD8T L1
ENSG00000287510 AL137857.1 -40373 sc-eQTL 6.60e-01 -0.0323 0.0732 0.549 CD8T L1
ENSG00000060688 SNRNP40 -605468 sc-eQTL 4.44e-01 -0.0603 0.0786 0.556 DC L1
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 2.70e-01 -0.103 0.0929 0.556 DC L1
ENSG00000134644 PUM1 -374671 sc-eQTL 1.62e-01 -0.102 0.0726 0.556 DC L1
ENSG00000162511 LAPTM5 -66454 sc-eQTL 3.24e-01 0.0514 0.052 0.556 DC L1
ENSG00000162517 PEF1 -953576 sc-eQTL 9.51e-01 -0.00518 0.0845 0.556 DC L1
ENSG00000168528 SERINC2 -718245 sc-eQTL 2.26e-01 0.104 0.0856 0.556 DC L1
ENSG00000284543 LINC01226 -814906 sc-eQTL 7.48e-01 0.0183 0.0569 0.556 DC L1
ENSG00000287510 AL137857.1 -40373 sc-eQTL 6.02e-01 -0.0431 0.0824 0.556 DC L1
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.58e-01 -0.00315 0.0602 0.549 Mono L1
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 8.69e-01 0.0124 0.0746 0.549 Mono L1
ENSG00000134644 PUM1 -374671 sc-eQTL 3.28e-02 0.102 0.0473 0.549 Mono L1
ENSG00000162511 LAPTM5 -66454 sc-eQTL 7.24e-01 0.0156 0.044 0.549 Mono L1
ENSG00000162512 SDC3 -217438 sc-eQTL 6.13e-01 -0.0428 0.0845 0.549 Mono L1
ENSG00000162517 PEF1 -953576 sc-eQTL 4.74e-01 0.0425 0.0593 0.549 Mono L1
ENSG00000168528 SERINC2 -718245 sc-eQTL 4.27e-01 -0.0722 0.0906 0.549 Mono L1
ENSG00000284543 LINC01226 -814906 sc-eQTL 9.94e-01 -0.000642 0.08 0.549 Mono L1
ENSG00000287510 AL137857.1 -40373 sc-eQTL 5.93e-01 -0.0374 0.0698 0.549 Mono L1
ENSG00000060688 SNRNP40 -605468 sc-eQTL 1.82e-02 0.193 0.0811 0.547 NK L1
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 1.37e-01 -0.0836 0.056 0.547 NK L1
ENSG00000134644 PUM1 -374671 sc-eQTL 6.39e-01 0.0277 0.059 0.547 NK L1
ENSG00000162511 LAPTM5 -66454 sc-eQTL 8.63e-01 -0.0118 0.0679 0.547 NK L1
ENSG00000162517 PEF1 -953576 sc-eQTL 3.94e-01 0.0423 0.0495 0.547 NK L1
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 3.97e-01 0.0647 0.0762 0.547 NK L1
ENSG00000287510 AL137857.1 -40373 sc-eQTL 6.72e-01 -0.0299 0.0705 0.547 NK L1
ENSG00000060688 SNRNP40 -605468 sc-eQTL 2.17e-01 0.0755 0.061 0.549 Other_T L1
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 8.97e-01 0.0085 0.0655 0.549 Other_T L1
ENSG00000134644 PUM1 -374671 sc-eQTL 1.41e-01 -0.0865 0.0586 0.549 Other_T L1
ENSG00000162511 LAPTM5 -66454 sc-eQTL 9.78e-03 0.124 0.0475 0.549 Other_T L1
ENSG00000162517 PEF1 -953576 sc-eQTL 3.75e-01 0.0572 0.0643 0.549 Other_T L1
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 3.14e-01 0.0795 0.0788 0.549 Other_T L1
ENSG00000287510 AL137857.1 -40373 sc-eQTL 2.63e-02 -0.182 0.0813 0.549 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.16e-01 0.0109 0.104 0.561 B_Activated L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 3.35e-01 0.101 0.104 0.561 B_Activated L2
ENSG00000134644 PUM1 -374671 sc-eQTL 4.15e-01 -0.0793 0.0971 0.561 B_Activated L2
ENSG00000162510 MATN1 -32265 sc-eQTL 8.09e-01 -0.0205 0.085 0.561 B_Activated L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 1.36e-01 0.0882 0.0589 0.561 B_Activated L2
ENSG00000162517 PEF1 -953576 sc-eQTL 2.06e-01 0.128 0.1 0.561 B_Activated L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 8.14e-01 0.0226 0.0957 0.561 B_Activated L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 9.54e-01 -0.0049 0.0847 0.561 B_Activated L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.27e-01 -0.0916 0.0933 0.549 B_Intermediate L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 5.30e-01 -0.049 0.0778 0.549 B_Intermediate L2
ENSG00000134644 PUM1 -374671 sc-eQTL 9.37e-01 0.00582 0.0735 0.549 B_Intermediate L2
ENSG00000162510 MATN1 -32265 sc-eQTL 7.81e-01 -0.0213 0.0765 0.549 B_Intermediate L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 4.03e-01 0.0393 0.0469 0.549 B_Intermediate L2
ENSG00000162517 PEF1 -953576 sc-eQTL 9.48e-01 -0.00564 0.0872 0.549 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 5.46e-01 0.0398 0.0658 0.549 B_Intermediate L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 4.91e-01 0.0508 0.0736 0.549 B_Intermediate L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 6.90e-01 0.0373 0.0936 0.55 B_Memory L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 8.13e-01 0.0204 0.0862 0.55 B_Memory L2
ENSG00000134644 PUM1 -374671 sc-eQTL 9.28e-01 0.00677 0.075 0.55 B_Memory L2
ENSG00000162510 MATN1 -32265 sc-eQTL 8.73e-01 -0.0115 0.0718 0.55 B_Memory L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 5.26e-01 0.0404 0.0636 0.55 B_Memory L2
ENSG00000162517 PEF1 -953576 sc-eQTL 3.12e-01 0.0859 0.0848 0.55 B_Memory L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 7.22e-01 -0.026 0.0728 0.55 B_Memory L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 7.80e-01 -0.0239 0.0853 0.55 B_Memory L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 4.39e-03 0.232 0.0806 0.549 B_Naive1 L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 8.15e-01 0.0166 0.0709 0.549 B_Naive1 L2
ENSG00000134644 PUM1 -374671 sc-eQTL 9.20e-01 0.00632 0.0626 0.549 B_Naive1 L2
ENSG00000162510 MATN1 -32265 sc-eQTL 1.23e-01 -0.0978 0.0631 0.549 B_Naive1 L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 3.53e-01 0.0394 0.0423 0.549 B_Naive1 L2
ENSG00000162517 PEF1 -953576 sc-eQTL 1.20e-01 0.116 0.0743 0.549 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 5.85e-01 0.0304 0.0557 0.549 B_Naive1 L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 1.86e-01 0.0909 0.0685 0.549 B_Naive1 L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.03e-01 0.0107 0.088 0.547 B_Naive2 L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 6.98e-03 -0.194 0.0714 0.547 B_Naive2 L2
ENSG00000134644 PUM1 -374671 sc-eQTL 2.74e-02 -0.156 0.0703 0.547 B_Naive2 L2
ENSG00000162510 MATN1 -32265 sc-eQTL 8.14e-01 -0.0161 0.0682 0.547 B_Naive2 L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 8.02e-01 0.0117 0.0463 0.547 B_Naive2 L2
ENSG00000162517 PEF1 -953576 sc-eQTL 8.52e-01 0.0158 0.0843 0.547 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 1.24e-01 0.104 0.0671 0.547 B_Naive2 L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 7.79e-01 0.0204 0.0729 0.547 B_Naive2 L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.26e-01 -0.00802 0.0861 0.557 CD4_CTL L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 3.48e-01 -0.0795 0.0845 0.557 CD4_CTL L2
ENSG00000134644 PUM1 -374671 sc-eQTL 2.67e-01 0.0922 0.0828 0.557 CD4_CTL L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 4.03e-01 0.0619 0.0739 0.557 CD4_CTL L2
ENSG00000162517 PEF1 -953576 sc-eQTL 3.93e-01 -0.0648 0.0757 0.557 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 7.63e-01 0.0244 0.0809 0.557 CD4_CTL L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 4.61e-01 0.0526 0.0713 0.557 CD4_CTL L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.28e-01 0.0669 0.0682 0.549 CD4_Naive L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 8.42e-01 0.0121 0.0606 0.549 CD4_Naive L2
ENSG00000134644 PUM1 -374671 sc-eQTL 3.30e-01 -0.0471 0.0483 0.549 CD4_Naive L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 6.12e-02 0.0968 0.0515 0.549 CD4_Naive L2
ENSG00000162517 PEF1 -953576 sc-eQTL 9.74e-01 -0.00186 0.0569 0.549 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 4.32e-01 0.0413 0.0526 0.549 CD4_Naive L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 5.93e-01 0.0323 0.0604 0.549 CD4_Naive L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 5.71e-01 0.0487 0.0859 0.549 CD4_TCM L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 9.16e-01 0.00735 0.0693 0.549 CD4_TCM L2
ENSG00000134644 PUM1 -374671 sc-eQTL 9.38e-01 -0.00475 0.0613 0.549 CD4_TCM L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 9.88e-01 -0.000757 0.0509 0.549 CD4_TCM L2
ENSG00000162517 PEF1 -953576 sc-eQTL 8.45e-01 -0.0133 0.0682 0.549 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 1.32e-01 0.097 0.0642 0.549 CD4_TCM L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 7.30e-01 -0.0248 0.0719 0.549 CD4_TCM L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 2.39e-01 0.102 0.0864 0.549 CD4_TEM L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 4.52e-01 -0.0621 0.0825 0.549 CD4_TEM L2
ENSG00000134644 PUM1 -374671 sc-eQTL 4.77e-01 0.0489 0.0687 0.549 CD4_TEM L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 4.46e-01 0.053 0.0695 0.549 CD4_TEM L2
ENSG00000162517 PEF1 -953576 sc-eQTL 3.97e-01 -0.0661 0.0778 0.549 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 5.61e-01 -0.0473 0.0813 0.549 CD4_TEM L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 4.46e-01 -0.0611 0.0801 0.549 CD4_TEM L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.06e-01 0.0111 0.093 0.549 CD8_CTL L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 3.83e-01 0.0622 0.0712 0.549 CD8_CTL L2
ENSG00000134644 PUM1 -374671 sc-eQTL 2.33e-01 0.0826 0.0691 0.549 CD8_CTL L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 2.92e-01 0.0808 0.0765 0.549 CD8_CTL L2
ENSG00000162517 PEF1 -953576 sc-eQTL 4.33e-01 0.0524 0.0667 0.549 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 3.07e-01 0.0824 0.0805 0.549 CD8_CTL L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 2.26e-01 -0.0917 0.0756 0.549 CD8_CTL L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.86e-02 0.142 0.0853 0.549 CD8_Naive L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 8.20e-02 -0.128 0.0735 0.549 CD8_Naive L2
ENSG00000134644 PUM1 -374671 sc-eQTL 9.96e-01 -0.000266 0.0596 0.549 CD8_Naive L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 9.86e-01 -0.00101 0.0571 0.549 CD8_Naive L2
ENSG00000162517 PEF1 -953576 sc-eQTL 6.94e-01 -0.0313 0.0793 0.549 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 2.36e-01 0.0844 0.071 0.549 CD8_Naive L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 6.51e-01 0.0351 0.0775 0.549 CD8_Naive L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 6.69e-01 0.0416 0.0973 0.549 CD8_TCM L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 1.95e-01 0.116 0.0888 0.549 CD8_TCM L2
ENSG00000134644 PUM1 -374671 sc-eQTL 7.59e-01 0.0258 0.0839 0.549 CD8_TCM L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 6.95e-01 0.0344 0.0878 0.549 CD8_TCM L2
ENSG00000162517 PEF1 -953576 sc-eQTL 9.62e-02 -0.149 0.0891 0.549 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 4.82e-01 -0.0572 0.0812 0.549 CD8_TCM L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 9.90e-01 -0.00105 0.0822 0.549 CD8_TCM L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 8.24e-01 0.0199 0.0891 0.539 CD8_TEM L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 1.23e-01 -0.132 0.0849 0.539 CD8_TEM L2
ENSG00000134644 PUM1 -374671 sc-eQTL 3.49e-01 -0.0817 0.0872 0.539 CD8_TEM L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 7.15e-01 0.03 0.0821 0.539 CD8_TEM L2
ENSG00000162517 PEF1 -953576 sc-eQTL 4.76e-01 -0.0551 0.0772 0.539 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 3.69e-01 -0.0766 0.0851 0.539 CD8_TEM L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 4.55e-01 0.0576 0.077 0.539 CD8_TEM L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 8.20e-01 0.0206 0.0901 0.55 MAIT L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 9.87e-01 -0.00126 0.0798 0.55 MAIT L2
ENSG00000134644 PUM1 -374671 sc-eQTL 8.79e-01 0.0117 0.0765 0.55 MAIT L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 9.53e-02 0.12 0.0717 0.55 MAIT L2
ENSG00000162517 PEF1 -953576 sc-eQTL 4.43e-01 0.0609 0.0792 0.55 MAIT L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 7.53e-01 0.0253 0.0804 0.55 MAIT L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 4.91e-02 -0.162 0.0821 0.55 MAIT L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 4.98e-01 0.0621 0.0914 0.551 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 8.45e-01 -0.0152 0.0774 0.551 NK_CD56bright L2
ENSG00000134644 PUM1 -374671 sc-eQTL 3.54e-01 0.0754 0.0811 0.551 NK_CD56bright L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 3.28e-02 0.17 0.0792 0.551 NK_CD56bright L2
ENSG00000162517 PEF1 -953576 sc-eQTL 5.63e-01 0.0451 0.0778 0.551 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 1.41e-01 -0.118 0.0801 0.551 NK_CD56bright L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 9.88e-01 0.00119 0.0793 0.551 NK_CD56bright L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.05e-01 0.0893 0.0869 0.547 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 1.79e-02 -0.152 0.0636 0.547 NK_CD56dim L2
ENSG00000134644 PUM1 -374671 sc-eQTL 5.56e-01 0.039 0.0661 0.547 NK_CD56dim L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 3.84e-01 -0.0613 0.0704 0.547 NK_CD56dim L2
ENSG00000162517 PEF1 -953576 sc-eQTL 5.18e-01 -0.0406 0.0627 0.547 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 6.32e-01 0.0424 0.0883 0.547 NK_CD56dim L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 8.70e-01 0.0119 0.0729 0.547 NK_CD56dim L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 6.71e-01 -0.0395 0.0931 0.55 NK_HLA L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 2.70e-01 0.0917 0.0829 0.55 NK_HLA L2
ENSG00000134644 PUM1 -374671 sc-eQTL 1.31e-01 -0.122 0.0805 0.55 NK_HLA L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 1.00e+00 1.54e-05 0.0773 0.55 NK_HLA L2
ENSG00000162517 PEF1 -953576 sc-eQTL 9.94e-01 -0.000602 0.0871 0.55 NK_HLA L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 3.03e-01 0.0847 0.082 0.55 NK_HLA L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 6.25e-01 -0.0389 0.0795 0.55 NK_HLA L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.51e-01 0.0793 0.0849 0.547 NK_cytokine L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 6.72e-01 -0.0281 0.0664 0.547 NK_cytokine L2
ENSG00000134644 PUM1 -374671 sc-eQTL 1.07e-01 0.116 0.0713 0.547 NK_cytokine L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 8.26e-01 0.0174 0.079 0.547 NK_cytokine L2
ENSG00000162517 PEF1 -953576 sc-eQTL 3.69e-01 0.0605 0.0672 0.547 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 6.90e-01 0.0335 0.0837 0.547 NK_cytokine L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 5.08e-01 0.0516 0.0778 0.547 NK_cytokine L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 4.40e-01 0.0807 0.104 0.541 PB L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 6.80e-01 -0.05 0.121 0.541 PB L2
ENSG00000134644 PUM1 -374671 sc-eQTL 2.69e-01 0.116 0.105 0.541 PB L2
ENSG00000162510 MATN1 -32265 sc-eQTL 7.11e-01 0.0363 0.098 0.541 PB L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 6.02e-01 -0.0366 0.07 0.541 PB L2
ENSG00000162517 PEF1 -953576 sc-eQTL 1.34e-01 0.161 0.107 0.541 PB L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 5.20e-01 0.0617 0.0957 0.541 PB L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 1.14e-01 -0.161 0.101 0.541 PB L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 5.14e-01 0.0442 0.0676 0.552 Pro_T L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 9.64e-01 0.00385 0.0859 0.552 Pro_T L2
ENSG00000134644 PUM1 -374671 sc-eQTL 1.15e-01 -0.126 0.0797 0.552 Pro_T L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 5.38e-01 0.0354 0.0574 0.552 Pro_T L2
ENSG00000162517 PEF1 -953576 sc-eQTL 3.67e-01 0.0761 0.0842 0.552 Pro_T L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 1.19e-01 -0.125 0.0799 0.552 Pro_T L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 9.48e-02 -0.123 0.0734 0.552 Pro_T L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.58e-01 0.0804 0.0873 0.549 Treg L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 6.63e-01 -0.037 0.0846 0.549 Treg L2
ENSG00000134644 PUM1 -374671 sc-eQTL 6.61e-01 0.0298 0.0677 0.549 Treg L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 5.45e-01 0.047 0.0775 0.549 Treg L2
ENSG00000162517 PEF1 -953576 sc-eQTL 6.24e-01 0.0411 0.0837 0.549 Treg L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 7.81e-01 0.022 0.079 0.549 Treg L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 5.29e-01 -0.0497 0.0789 0.549 Treg L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.85e-01 0.0808 0.0928 0.559 cDC L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 3.68e-01 0.0907 0.1 0.559 cDC L2
ENSG00000134644 PUM1 -374671 sc-eQTL 9.52e-02 -0.144 0.0859 0.559 cDC L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 2.15e-01 0.0752 0.0604 0.559 cDC L2
ENSG00000162517 PEF1 -953576 sc-eQTL 9.67e-01 0.00358 0.0878 0.559 cDC L2
ENSG00000168528 SERINC2 -718245 sc-eQTL 1.30e-01 0.118 0.0774 0.559 cDC L2
ENSG00000284543 LINC01226 -814906 sc-eQTL 4.60e-01 0.0565 0.0764 0.559 cDC L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 9.13e-01 0.00904 0.0823 0.559 cDC L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.65e-01 0.066 0.0726 0.549 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 4.83e-01 0.057 0.0811 0.549 cMono_IL1B L2
ENSG00000134644 PUM1 -374671 sc-eQTL 2.20e-02 0.125 0.0543 0.549 cMono_IL1B L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 5.63e-01 -0.0279 0.0482 0.549 cMono_IL1B L2
ENSG00000162512 SDC3 -217438 sc-eQTL 9.05e-01 -0.0109 0.0909 0.549 cMono_IL1B L2
ENSG00000162517 PEF1 -953576 sc-eQTL 3.04e-01 0.0763 0.074 0.549 cMono_IL1B L2
ENSG00000168528 SERINC2 -718245 sc-eQTL 5.62e-01 -0.0534 0.0919 0.549 cMono_IL1B L2
ENSG00000284543 LINC01226 -814906 sc-eQTL 6.39e-01 -0.0382 0.0813 0.549 cMono_IL1B L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 2.80e-01 -0.082 0.0756 0.549 cMono_IL1B L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 8.15e-01 0.0181 0.077 0.549 cMono_S100A L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 6.64e-01 0.0395 0.0909 0.549 cMono_S100A L2
ENSG00000134644 PUM1 -374671 sc-eQTL 5.60e-01 0.0383 0.0657 0.549 cMono_S100A L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 3.10e-01 0.0513 0.0504 0.549 cMono_S100A L2
ENSG00000162512 SDC3 -217438 sc-eQTL 8.44e-01 -0.0172 0.0873 0.549 cMono_S100A L2
ENSG00000162517 PEF1 -953576 sc-eQTL 5.44e-01 -0.0479 0.0788 0.549 cMono_S100A L2
ENSG00000168528 SERINC2 -718245 sc-eQTL 5.16e-01 -0.0601 0.0923 0.549 cMono_S100A L2
ENSG00000284543 LINC01226 -814906 sc-eQTL 6.38e-01 -0.0354 0.075 0.549 cMono_S100A L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 3.63e-01 -0.0686 0.0752 0.549 cMono_S100A L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 5.30e-01 0.0703 0.112 0.567 gdT L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 2.72e-01 0.105 0.0956 0.567 gdT L2
ENSG00000134644 PUM1 -374671 sc-eQTL 7.17e-01 0.0359 0.0989 0.567 gdT L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 5.56e-01 -0.0634 0.107 0.567 gdT L2
ENSG00000162517 PEF1 -953576 sc-eQTL 7.74e-01 0.0283 0.0984 0.567 gdT L2
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 8.45e-01 -0.0195 0.0992 0.567 gdT L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 2.32e-01 -0.115 0.0957 0.567 gdT L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.52e-01 -0.00513 0.0851 0.549 intMono L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 9.20e-01 -0.00925 0.0915 0.549 intMono L2
ENSG00000134644 PUM1 -374671 sc-eQTL 5.06e-01 0.0517 0.0776 0.549 intMono L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 8.08e-01 0.0148 0.0609 0.549 intMono L2
ENSG00000162512 SDC3 -217438 sc-eQTL 4.07e-01 -0.0691 0.0833 0.549 intMono L2
ENSG00000162517 PEF1 -953576 sc-eQTL 5.97e-01 0.0464 0.0876 0.549 intMono L2
ENSG00000168528 SERINC2 -718245 sc-eQTL 9.60e-01 0.00435 0.0873 0.549 intMono L2
ENSG00000284543 LINC01226 -814906 sc-eQTL 3.62e-01 -0.0754 0.0826 0.549 intMono L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 5.06e-01 -0.0551 0.0827 0.549 intMono L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.72e-01 0.0712 0.0796 0.55 ncMono L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 6.35e-01 -0.0404 0.085 0.55 ncMono L2
ENSG00000134644 PUM1 -374671 sc-eQTL 2.51e-01 0.0797 0.0693 0.55 ncMono L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 2.45e-01 0.0733 0.0629 0.55 ncMono L2
ENSG00000162512 SDC3 -217438 sc-eQTL 1.04e-01 -0.115 0.0703 0.55 ncMono L2
ENSG00000162517 PEF1 -953576 sc-eQTL 4.93e-02 0.159 0.0804 0.55 ncMono L2
ENSG00000168528 SERINC2 -718245 sc-eQTL 9.31e-01 -0.00666 0.0772 0.55 ncMono L2
ENSG00000284543 LINC01226 -814906 sc-eQTL 2.13e-01 0.0961 0.0769 0.55 ncMono L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 9.24e-01 -0.0076 0.08 0.55 ncMono L2
ENSG00000060688 SNRNP40 -605468 sc-eQTL 2.32e-01 -0.107 0.0892 0.545 pDC L2
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 5.94e-01 -0.0525 0.0982 0.545 pDC L2
ENSG00000134644 PUM1 -374671 sc-eQTL 7.73e-01 0.0235 0.0815 0.545 pDC L2
ENSG00000162511 LAPTM5 -66454 sc-eQTL 7.39e-01 -0.0252 0.0758 0.545 pDC L2
ENSG00000162517 PEF1 -953576 sc-eQTL 4.66e-01 0.0717 0.0982 0.545 pDC L2
ENSG00000168528 SERINC2 -718245 sc-eQTL 4.28e-01 -0.0728 0.0917 0.545 pDC L2
ENSG00000284543 LINC01226 -814906 sc-eQTL 9.27e-02 -0.12 0.0707 0.545 pDC L2
ENSG00000287510 AL137857.1 -40373 sc-eQTL 3.41e-01 -0.0799 0.0837 0.545 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -605468 sc-eQTL 7.65e-01 0.0268 0.0895 0.549 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 9.33e-01 0.00624 0.0745 0.549 B_Memory LOneK1K
ENSG00000134644 PUM1 -374671 sc-eQTL 7.13e-01 -0.0243 0.066 0.549 B_Memory LOneK1K
ENSG00000162510 MATN1 -32265 sc-eQTL 7.41e-01 -0.0249 0.0752 0.549 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -66454 sc-eQTL 1.81e-01 0.0632 0.0471 0.549 B_Memory LOneK1K
ENSG00000162517 PEF1 -953576 sc-eQTL 9.03e-01 -0.00955 0.0783 0.549 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 5.73e-01 0.0353 0.0625 0.549 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -40373 sc-eQTL 4.42e-01 0.0524 0.0681 0.549 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.21e-02 0.171 0.0792 0.549 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 2.07e-01 -0.0798 0.0631 0.549 B_Naive LOneK1K
ENSG00000134644 PUM1 -374671 sc-eQTL 3.97e-01 -0.0507 0.0598 0.549 B_Naive LOneK1K
ENSG00000162510 MATN1 -32265 sc-eQTL 2.18e-01 -0.071 0.0575 0.549 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -66454 sc-eQTL 4.06e-01 0.0338 0.0405 0.549 B_Naive LOneK1K
ENSG00000162517 PEF1 -953576 sc-eQTL 2.34e-01 0.0882 0.0739 0.549 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 4.79e-01 0.0372 0.0524 0.549 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -40373 sc-eQTL 1.35e-01 0.093 0.062 0.549 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -605468 sc-eQTL 9.33e-01 0.00581 0.069 0.549 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 6.20e-01 0.0388 0.0781 0.549 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -374671 sc-eQTL 4.85e-02 0.098 0.0494 0.549 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -66454 sc-eQTL 9.82e-01 0.000978 0.0438 0.549 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -217438 sc-eQTL 9.98e-01 -0.000224 0.0894 0.549 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -953576 sc-eQTL 9.07e-01 -0.00737 0.0628 0.549 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -718245 sc-eQTL 4.16e-01 -0.0748 0.0918 0.549 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -814906 sc-eQTL 7.01e-01 -0.029 0.0754 0.549 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -40373 sc-eQTL 3.94e-01 -0.0602 0.0705 0.549 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -605468 sc-eQTL 2.57e-01 0.0859 0.0756 0.547 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 2.39e-01 -0.0976 0.0827 0.547 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -374671 sc-eQTL 2.71e-01 0.0747 0.0678 0.547 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -66454 sc-eQTL 8.18e-01 0.0126 0.0544 0.547 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -217438 sc-eQTL 3.27e-01 -0.0779 0.0792 0.547 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -953576 sc-eQTL 9.83e-02 0.119 0.0717 0.547 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -718245 sc-eQTL 8.97e-01 -0.0107 0.0823 0.547 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -814906 sc-eQTL 9.67e-01 0.00321 0.0781 0.547 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -40373 sc-eQTL 4.30e-01 -0.0618 0.0781 0.547 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -605468 sc-eQTL 3.53e-02 0.173 0.0817 0.547 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -605662 sc-eQTL 1.23e-01 -0.0868 0.0561 0.547 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -374671 sc-eQTL 5.33e-01 0.0386 0.0617 0.547 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -66454 sc-eQTL 5.99e-01 -0.0363 0.069 0.547 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -953576 sc-eQTL 7.99e-01 0.0133 0.0524 0.547 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -27184 sc-eQTL 2.90e-01 0.0843 0.0794 0.547 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -40373 sc-eQTL 5.96e-01 -0.0365 0.0687 0.547 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -66454 eQTL 2.99e-05 -0.0419 0.01 0.0 0.0 0.417
ENSG00000168528 SERINC2 -718245 eQTL 0.0161 0.0937 0.0389 0.0 0.0 0.417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -66454 5.92e-06 3.09e-06 5.1e-07 1.94e-06 4.41e-07 1.76e-06 2.48e-06 4.42e-07 2.28e-06 1.17e-06 2.9e-06 1.29e-06 4.6e-06 1.16e-06 9.69e-07 1.84e-06 1.34e-06 2.03e-06 1.59e-06 1.15e-06 1.15e-06 3.7e-06 2.71e-06 1.17e-06 4.11e-06 1.33e-06 1.44e-06 1.81e-06 3.78e-06 3.38e-06 2e-06 3.8e-07 7.71e-07 1.34e-06 1.29e-06 9.27e-07 8.44e-07 4.13e-07 1.26e-06 3.98e-07 2.87e-07 4.18e-06 4.36e-07 2.06e-07 3.13e-07 3.29e-07 8.22e-07 2.42e-07 3.73e-07