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Genes within 1Mb (chr1:30689583:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -607205 sc-eQTL 2.82e-01 0.084 0.0779 0.637 B L1
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 2.29e-01 -0.0753 0.0624 0.637 B L1
ENSG00000134644 PUM1 -376408 sc-eQTL 9.12e-02 -0.0885 0.0521 0.637 B L1
ENSG00000162510 MATN1 -34002 sc-eQTL 2.19e-01 -0.0678 0.055 0.637 B L1
ENSG00000162511 LAPTM5 -68191 sc-eQTL 4.23e-01 0.0346 0.0432 0.637 B L1
ENSG00000162517 PEF1 -955313 sc-eQTL 5.66e-01 0.0375 0.0652 0.637 B L1
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 3.40e-01 0.0483 0.0505 0.637 B L1
ENSG00000287510 AL137857.1 -42110 sc-eQTL 5.41e-01 0.0367 0.0599 0.637 B L1
ENSG00000060688 SNRNP40 -607205 sc-eQTL 7.91e-01 0.018 0.0678 0.637 CD4T L1
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 7.16e-01 0.0193 0.053 0.637 CD4T L1
ENSG00000134644 PUM1 -376408 sc-eQTL 7.56e-01 -0.0146 0.0471 0.637 CD4T L1
ENSG00000162511 LAPTM5 -68191 sc-eQTL 4.55e-02 0.104 0.0518 0.637 CD4T L1
ENSG00000162517 PEF1 -955313 sc-eQTL 5.35e-01 -0.034 0.0546 0.637 CD4T L1
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 2.24e-01 0.0568 0.0466 0.637 CD4T L1
ENSG00000287510 AL137857.1 -42110 sc-eQTL 9.11e-01 -0.00628 0.056 0.637 CD4T L1
ENSG00000060688 SNRNP40 -607205 sc-eQTL 1.92e-01 0.118 0.0901 0.637 CD8T L1
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 5.06e-01 -0.04 0.0601 0.637 CD8T L1
ENSG00000134644 PUM1 -376408 sc-eQTL 3.92e-01 0.0454 0.0529 0.637 CD8T L1
ENSG00000162511 LAPTM5 -68191 sc-eQTL 2.89e-01 0.0546 0.0513 0.637 CD8T L1
ENSG00000162517 PEF1 -955313 sc-eQTL 7.25e-01 -0.0223 0.0634 0.637 CD8T L1
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 7.81e-01 0.0168 0.0603 0.637 CD8T L1
ENSG00000287510 AL137857.1 -42110 sc-eQTL 7.75e-01 0.0217 0.0758 0.637 CD8T L1
ENSG00000060688 SNRNP40 -607205 sc-eQTL 1.99e-01 -0.104 0.0805 0.644 DC L1
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 1.30e-01 -0.144 0.0951 0.644 DC L1
ENSG00000134644 PUM1 -376408 sc-eQTL 6.22e-02 -0.139 0.0743 0.644 DC L1
ENSG00000162511 LAPTM5 -68191 sc-eQTL 1.44e-01 0.078 0.0532 0.644 DC L1
ENSG00000162517 PEF1 -955313 sc-eQTL 2.43e-01 0.101 0.0865 0.644 DC L1
ENSG00000168528 SERINC2 -719982 sc-eQTL 6.30e-01 0.0426 0.0882 0.644 DC L1
ENSG00000284543 LINC01226 -816643 sc-eQTL 6.99e-01 0.0226 0.0584 0.644 DC L1
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.83e-01 -0.0345 0.0846 0.644 DC L1
ENSG00000060688 SNRNP40 -607205 sc-eQTL 9.27e-01 -0.00564 0.0615 0.637 Mono L1
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.47e-01 -0.00512 0.0763 0.637 Mono L1
ENSG00000134644 PUM1 -376408 sc-eQTL 1.64e-01 0.068 0.0487 0.637 Mono L1
ENSG00000162511 LAPTM5 -68191 sc-eQTL 4.39e-01 0.0349 0.0449 0.637 Mono L1
ENSG00000162512 SDC3 -219175 sc-eQTL 9.91e-01 0.000999 0.0865 0.637 Mono L1
ENSG00000162517 PEF1 -955313 sc-eQTL 9.54e-01 0.00351 0.0607 0.637 Mono L1
ENSG00000168528 SERINC2 -719982 sc-eQTL 6.86e-01 -0.0376 0.0928 0.637 Mono L1
ENSG00000284543 LINC01226 -816643 sc-eQTL 6.36e-01 -0.0387 0.0817 0.637 Mono L1
ENSG00000287510 AL137857.1 -42110 sc-eQTL 9.58e-01 -0.00377 0.0714 0.637 Mono L1
ENSG00000060688 SNRNP40 -607205 sc-eQTL 2.53e-02 0.188 0.0835 0.635 NK L1
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 1.91e-02 -0.135 0.0571 0.635 NK L1
ENSG00000134644 PUM1 -376408 sc-eQTL 7.26e-01 -0.0213 0.0607 0.635 NK L1
ENSG00000162511 LAPTM5 -68191 sc-eQTL 1.32e-01 0.105 0.0695 0.635 NK L1
ENSG00000162517 PEF1 -955313 sc-eQTL 3.91e-01 0.0438 0.0509 0.635 NK L1
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 7.54e-01 0.0246 0.0785 0.635 NK L1
ENSG00000287510 AL137857.1 -42110 sc-eQTL 4.99e-01 0.049 0.0724 0.635 NK L1
ENSG00000060688 SNRNP40 -607205 sc-eQTL 2.09e-01 0.0796 0.0631 0.637 Other_T L1
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 6.13e-01 -0.0343 0.0677 0.637 Other_T L1
ENSG00000134644 PUM1 -376408 sc-eQTL 5.07e-01 -0.0405 0.0609 0.637 Other_T L1
ENSG00000162511 LAPTM5 -68191 sc-eQTL 3.52e-03 0.144 0.0489 0.637 Other_T L1
ENSG00000162517 PEF1 -955313 sc-eQTL 8.29e-01 -0.0144 0.0667 0.637 Other_T L1
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 2.72e-01 0.0898 0.0815 0.637 Other_T L1
ENSG00000287510 AL137857.1 -42110 sc-eQTL 1.49e-01 -0.123 0.0847 0.637 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -607205 sc-eQTL 7.33e-01 -0.0361 0.106 0.653 B_Activated L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 4.58e-01 0.0792 0.106 0.653 B_Activated L2
ENSG00000134644 PUM1 -376408 sc-eQTL 4.46e-01 -0.0755 0.0988 0.653 B_Activated L2
ENSG00000162510 MATN1 -34002 sc-eQTL 1.38e-01 -0.128 0.0859 0.653 B_Activated L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 9.83e-01 -0.00131 0.0603 0.653 B_Activated L2
ENSG00000162517 PEF1 -955313 sc-eQTL 1.02e-01 0.168 0.102 0.653 B_Activated L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 7.13e-01 0.0358 0.0973 0.653 B_Activated L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.21e-01 -0.0426 0.0861 0.653 B_Activated L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 5.21e-02 -0.188 0.0961 0.637 B_Intermediate L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 5.46e-01 -0.0489 0.0808 0.637 B_Intermediate L2
ENSG00000134644 PUM1 -376408 sc-eQTL 9.14e-01 -0.00821 0.0762 0.637 B_Intermediate L2
ENSG00000162510 MATN1 -34002 sc-eQTL 9.47e-01 -0.00525 0.0794 0.637 B_Intermediate L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 4.77e-01 0.0347 0.0487 0.637 B_Intermediate L2
ENSG00000162517 PEF1 -955313 sc-eQTL 7.42e-01 0.0298 0.0904 0.637 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 3.98e-01 0.0577 0.0682 0.637 B_Intermediate L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 7.23e-01 0.0271 0.0765 0.637 B_Intermediate L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 9.89e-01 0.00139 0.0972 0.636 B_Memory L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.98e-01 -0.000251 0.0895 0.636 B_Memory L2
ENSG00000134644 PUM1 -376408 sc-eQTL 7.60e-01 0.0238 0.0779 0.636 B_Memory L2
ENSG00000162510 MATN1 -34002 sc-eQTL 8.68e-01 0.0124 0.0745 0.636 B_Memory L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 5.97e-01 0.0349 0.066 0.636 B_Memory L2
ENSG00000162517 PEF1 -955313 sc-eQTL 7.84e-02 0.155 0.0876 0.636 B_Memory L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 4.45e-01 -0.0577 0.0755 0.636 B_Memory L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 3.82e-01 -0.0775 0.0884 0.636 B_Memory L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 6.29e-03 0.227 0.0824 0.637 B_Naive1 L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.36e-01 0.00578 0.0724 0.637 B_Naive1 L2
ENSG00000134644 PUM1 -376408 sc-eQTL 6.24e-01 -0.0314 0.0638 0.637 B_Naive1 L2
ENSG00000162510 MATN1 -34002 sc-eQTL 2.81e-01 -0.0698 0.0646 0.637 B_Naive1 L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 7.53e-01 0.0136 0.0433 0.637 B_Naive1 L2
ENSG00000162517 PEF1 -955313 sc-eQTL 4.35e-01 0.0597 0.0762 0.637 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 4.00e-01 0.0479 0.0567 0.637 B_Naive1 L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 1.50e-01 0.101 0.0699 0.637 B_Naive1 L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 8.42e-01 -0.0181 0.0903 0.635 B_Naive2 L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 7.17e-03 -0.199 0.0733 0.635 B_Naive2 L2
ENSG00000134644 PUM1 -376408 sc-eQTL 3.41e-03 -0.212 0.0715 0.635 B_Naive2 L2
ENSG00000162510 MATN1 -34002 sc-eQTL 3.52e-01 -0.0652 0.0699 0.635 B_Naive2 L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 9.72e-01 -0.00165 0.0476 0.635 B_Naive2 L2
ENSG00000162517 PEF1 -955313 sc-eQTL 2.77e-01 -0.0941 0.0863 0.635 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 1.67e-01 0.0957 0.069 0.635 B_Naive2 L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 9.62e-01 -0.00358 0.0748 0.635 B_Naive2 L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 6.15e-01 -0.045 0.0893 0.643 CD4_CTL L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 6.23e-01 -0.0433 0.0879 0.643 CD4_CTL L2
ENSG00000134644 PUM1 -376408 sc-eQTL 1.86e-01 0.114 0.0858 0.643 CD4_CTL L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 1.11e-01 0.122 0.0764 0.643 CD4_CTL L2
ENSG00000162517 PEF1 -955313 sc-eQTL 9.92e-01 -0.000756 0.0788 0.643 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 6.38e-01 0.0396 0.084 0.643 CD4_CTL L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 2.42e-01 0.0868 0.0739 0.643 CD4_CTL L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 8.89e-01 0.00987 0.0708 0.637 CD4_Naive L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 7.74e-01 0.018 0.0628 0.637 CD4_Naive L2
ENSG00000134644 PUM1 -376408 sc-eQTL 8.23e-01 -0.0112 0.0501 0.637 CD4_Naive L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 4.36e-02 0.108 0.0532 0.637 CD4_Naive L2
ENSG00000162517 PEF1 -955313 sc-eQTL 3.00e-01 -0.061 0.0587 0.637 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 4.33e-01 0.0428 0.0544 0.637 CD4_Naive L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 5.82e-01 0.0345 0.0626 0.637 CD4_Naive L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 8.81e-01 0.0132 0.0883 0.637 CD4_TCM L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 5.85e-01 -0.0389 0.0712 0.637 CD4_TCM L2
ENSG00000134644 PUM1 -376408 sc-eQTL 7.88e-01 0.017 0.063 0.637 CD4_TCM L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 3.25e-01 0.0515 0.0522 0.637 CD4_TCM L2
ENSG00000162517 PEF1 -955313 sc-eQTL 9.41e-01 0.0052 0.0701 0.637 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 2.50e-01 0.0762 0.0662 0.637 CD4_TCM L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 5.29e-01 -0.0465 0.0739 0.637 CD4_TCM L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 1.68e-01 0.123 0.0889 0.637 CD4_TEM L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 5.63e-01 0.0493 0.085 0.637 CD4_TEM L2
ENSG00000134644 PUM1 -376408 sc-eQTL 4.81e-01 0.05 0.0708 0.637 CD4_TEM L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 3.19e-02 0.153 0.0709 0.637 CD4_TEM L2
ENSG00000162517 PEF1 -955313 sc-eQTL 8.91e-01 -0.011 0.0803 0.637 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 4.55e-01 -0.0627 0.0837 0.637 CD4_TEM L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 7.75e-01 -0.0236 0.0826 0.637 CD4_TEM L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 9.93e-01 -0.000824 0.0962 0.637 CD8_CTL L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 7.19e-01 0.0266 0.0737 0.637 CD8_CTL L2
ENSG00000134644 PUM1 -376408 sc-eQTL 1.65e-01 0.0993 0.0713 0.637 CD8_CTL L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 1.34e-01 0.119 0.0789 0.637 CD8_CTL L2
ENSG00000162517 PEF1 -955313 sc-eQTL 2.75e-01 0.0754 0.0689 0.637 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 8.85e-01 0.0121 0.0833 0.637 CD8_CTL L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 5.61e-01 -0.0457 0.0783 0.637 CD8_CTL L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 2.00e-01 0.114 0.0884 0.637 CD8_Naive L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 2.37e-01 -0.0904 0.0763 0.637 CD8_Naive L2
ENSG00000134644 PUM1 -376408 sc-eQTL 7.90e-01 0.0164 0.0616 0.637 CD8_Naive L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 1.47e-01 0.0855 0.0587 0.637 CD8_Naive L2
ENSG00000162517 PEF1 -955313 sc-eQTL 4.49e-01 -0.0622 0.0819 0.637 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 3.37e-01 0.0708 0.0735 0.637 CD8_Naive L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.47e-01 0.0368 0.0802 0.637 CD8_Naive L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 5.02e-01 0.0681 0.101 0.641 CD8_TCM L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 3.38e-01 0.089 0.0926 0.641 CD8_TCM L2
ENSG00000134644 PUM1 -376408 sc-eQTL 4.67e-01 0.0635 0.0872 0.641 CD8_TCM L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 9.85e-02 0.151 0.0907 0.641 CD8_TCM L2
ENSG00000162517 PEF1 -955313 sc-eQTL 1.26e-01 -0.143 0.0928 0.641 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 8.88e-02 -0.144 0.0839 0.641 CD8_TCM L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.05e-01 0.0442 0.0854 0.641 CD8_TCM L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 7.52e-01 0.0289 0.0913 0.626 CD8_TEM L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 3.67e-01 -0.079 0.0874 0.626 CD8_TEM L2
ENSG00000134644 PUM1 -376408 sc-eQTL 9.98e-01 -0.00027 0.0895 0.626 CD8_TEM L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 9.80e-01 -0.00215 0.0842 0.626 CD8_TEM L2
ENSG00000162517 PEF1 -955313 sc-eQTL 2.63e-01 -0.0886 0.079 0.626 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 3.61e-01 -0.0799 0.0872 0.626 CD8_TEM L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 9.62e-01 -0.00377 0.079 0.626 CD8_TEM L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 6.61e-01 0.041 0.0933 0.639 MAIT L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 8.81e-01 0.0124 0.0827 0.639 MAIT L2
ENSG00000134644 PUM1 -376408 sc-eQTL 6.83e-01 0.0324 0.0792 0.639 MAIT L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 4.68e-03 0.21 0.0733 0.639 MAIT L2
ENSG00000162517 PEF1 -955313 sc-eQTL 8.26e-01 -0.0181 0.0821 0.639 MAIT L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 7.39e-01 0.0278 0.0832 0.639 MAIT L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 3.73e-02 -0.178 0.0849 0.639 MAIT L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 3.65e-01 0.0852 0.0937 0.64 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 2.27e-01 -0.0957 0.0791 0.64 NK_CD56bright L2
ENSG00000134644 PUM1 -376408 sc-eQTL 5.21e-01 0.0536 0.0833 0.64 NK_CD56bright L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 3.51e-02 0.173 0.0813 0.64 NK_CD56bright L2
ENSG00000162517 PEF1 -955313 sc-eQTL 8.45e-01 0.0156 0.0799 0.64 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 1.44e-02 -0.201 0.0814 0.64 NK_CD56bright L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 4.96e-01 -0.0555 0.0813 0.64 NK_CD56bright L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 4.05e-01 0.0745 0.0893 0.636 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 5.40e-03 -0.183 0.0649 0.636 NK_CD56dim L2
ENSG00000134644 PUM1 -376408 sc-eQTL 8.41e-01 -0.0136 0.0679 0.636 NK_CD56dim L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 5.21e-01 0.0465 0.0723 0.636 NK_CD56dim L2
ENSG00000162517 PEF1 -955313 sc-eQTL 6.00e-01 -0.0338 0.0644 0.636 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 5.27e-01 0.0575 0.0906 0.636 NK_CD56dim L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 1.10e-01 0.119 0.0743 0.636 NK_CD56dim L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 4.36e-01 -0.0744 0.0954 0.639 NK_HLA L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 6.55e-01 0.0382 0.0852 0.639 NK_HLA L2
ENSG00000134644 PUM1 -376408 sc-eQTL 2.99e-01 -0.0863 0.0829 0.639 NK_HLA L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 2.44e-02 0.178 0.0783 0.639 NK_HLA L2
ENSG00000162517 PEF1 -955313 sc-eQTL 4.39e-01 -0.0691 0.0892 0.639 NK_HLA L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 4.88e-01 0.0586 0.0843 0.639 NK_HLA L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 1.61e-01 0.114 0.0812 0.639 NK_HLA L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 4.62e-01 0.0643 0.0872 0.636 NK_cytokine L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 5.56e-01 -0.0401 0.0681 0.636 NK_cytokine L2
ENSG00000134644 PUM1 -376408 sc-eQTL 5.47e-01 0.0444 0.0736 0.636 NK_cytokine L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 1.24e-01 0.125 0.0807 0.636 NK_cytokine L2
ENSG00000162517 PEF1 -955313 sc-eQTL 2.24e-01 0.084 0.0689 0.636 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 9.97e-01 -0.000356 0.086 0.636 NK_cytokine L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 8.88e-01 -0.0113 0.08 0.636 NK_cytokine L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 1.14e-01 0.162 0.102 0.63 PB L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 3.20e-01 -0.118 0.119 0.63 PB L2
ENSG00000134644 PUM1 -376408 sc-eQTL 8.96e-01 0.0136 0.103 0.63 PB L2
ENSG00000162510 MATN1 -34002 sc-eQTL 9.05e-01 0.0115 0.0964 0.63 PB L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 9.72e-01 -0.00245 0.0689 0.63 PB L2
ENSG00000162517 PEF1 -955313 sc-eQTL 2.80e-01 0.114 0.105 0.63 PB L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 1.38e-01 0.139 0.0933 0.63 PB L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 1.85e-01 -0.133 0.0996 0.63 PB L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 7.67e-01 0.0206 0.0693 0.637 Pro_T L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 7.00e-01 -0.034 0.088 0.637 Pro_T L2
ENSG00000134644 PUM1 -376408 sc-eQTL 4.22e-01 -0.066 0.082 0.637 Pro_T L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 7.46e-01 0.0191 0.0589 0.637 Pro_T L2
ENSG00000162517 PEF1 -955313 sc-eQTL 6.22e-01 0.0427 0.0864 0.637 Pro_T L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 4.04e-01 -0.0688 0.0822 0.637 Pro_T L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 3.07e-01 -0.0773 0.0755 0.637 Pro_T L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 9.70e-01 -0.00346 0.0903 0.637 Treg L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 4.53e-01 0.0656 0.0872 0.637 Treg L2
ENSG00000134644 PUM1 -376408 sc-eQTL 7.19e-01 0.0252 0.0699 0.637 Treg L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 9.89e-02 0.132 0.0795 0.637 Treg L2
ENSG00000162517 PEF1 -955313 sc-eQTL 8.44e-01 -0.0171 0.0865 0.637 Treg L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 5.19e-01 0.0527 0.0815 0.637 Treg L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.00e-01 0.0428 0.0814 0.637 Treg L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 7.07e-01 0.0364 0.0969 0.654 cDC L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 5.00e-01 0.0709 0.105 0.654 cDC L2
ENSG00000134644 PUM1 -376408 sc-eQTL 2.31e-01 -0.108 0.0898 0.654 cDC L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 7.34e-02 0.113 0.0626 0.654 cDC L2
ENSG00000162517 PEF1 -955313 sc-eQTL 1.47e-01 0.132 0.091 0.654 cDC L2
ENSG00000168528 SERINC2 -719982 sc-eQTL 9.63e-02 0.135 0.0805 0.654 cDC L2
ENSG00000284543 LINC01226 -816643 sc-eQTL 9.18e-01 -0.00821 0.0797 0.654 cDC L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 9.29e-01 0.0077 0.0858 0.654 cDC L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 3.19e-01 0.0738 0.0738 0.637 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.00e-01 0.0104 0.0825 0.637 cMono_IL1B L2
ENSG00000134644 PUM1 -376408 sc-eQTL 5.91e-02 0.105 0.0554 0.637 cMono_IL1B L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 8.25e-01 -0.0108 0.049 0.637 cMono_IL1B L2
ENSG00000162512 SDC3 -219175 sc-eQTL 7.59e-01 0.0284 0.0924 0.637 cMono_IL1B L2
ENSG00000162517 PEF1 -955313 sc-eQTL 7.78e-01 0.0213 0.0755 0.637 cMono_IL1B L2
ENSG00000168528 SERINC2 -719982 sc-eQTL 9.36e-01 0.00753 0.0935 0.637 cMono_IL1B L2
ENSG00000284543 LINC01226 -816643 sc-eQTL 3.66e-01 -0.0747 0.0825 0.637 cMono_IL1B L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 3.89e-01 -0.0665 0.077 0.637 cMono_IL1B L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 8.89e-01 -0.011 0.0783 0.637 cMono_S100A L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.66e-01 0.00396 0.0925 0.637 cMono_S100A L2
ENSG00000134644 PUM1 -376408 sc-eQTL 5.98e-01 -0.0353 0.0668 0.637 cMono_S100A L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 4.01e-01 0.0432 0.0513 0.637 cMono_S100A L2
ENSG00000162512 SDC3 -219175 sc-eQTL 9.97e-01 -0.000376 0.0888 0.637 cMono_S100A L2
ENSG00000162517 PEF1 -955313 sc-eQTL 5.59e-01 -0.0468 0.0801 0.637 cMono_S100A L2
ENSG00000168528 SERINC2 -719982 sc-eQTL 6.02e-01 -0.0491 0.094 0.637 cMono_S100A L2
ENSG00000284543 LINC01226 -816643 sc-eQTL 5.22e-01 -0.049 0.0763 0.637 cMono_S100A L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 5.42e-01 -0.0468 0.0766 0.637 cMono_S100A L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 4.40e-01 0.0886 0.114 0.652 gdT L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 1.12e-01 0.156 0.0976 0.652 gdT L2
ENSG00000134644 PUM1 -376408 sc-eQTL 9.55e-01 0.00577 0.102 0.652 gdT L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 9.02e-01 0.0136 0.11 0.652 gdT L2
ENSG00000162517 PEF1 -955313 sc-eQTL 8.27e-01 -0.0222 0.101 0.652 gdT L2
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 7.90e-01 -0.0271 0.102 0.652 gdT L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 9.63e-01 -0.00457 0.0987 0.652 gdT L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 7.52e-01 0.0277 0.0873 0.64 intMono L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.96e-01 -0.000493 0.0939 0.64 intMono L2
ENSG00000134644 PUM1 -376408 sc-eQTL 4.87e-01 -0.0555 0.0796 0.64 intMono L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 3.28e-01 0.0611 0.0624 0.64 intMono L2
ENSG00000162512 SDC3 -219175 sc-eQTL 3.83e-01 -0.0747 0.0854 0.64 intMono L2
ENSG00000162517 PEF1 -955313 sc-eQTL 2.36e-01 0.107 0.0896 0.64 intMono L2
ENSG00000168528 SERINC2 -719982 sc-eQTL 5.66e-01 0.0515 0.0895 0.64 intMono L2
ENSG00000284543 LINC01226 -816643 sc-eQTL 8.11e-01 -0.0204 0.0849 0.64 intMono L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.33e-01 -0.0405 0.0849 0.64 intMono L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 6.06e-01 0.042 0.0812 0.638 ncMono L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.95e-01 -0.000554 0.0867 0.638 ncMono L2
ENSG00000134644 PUM1 -376408 sc-eQTL 4.43e-01 0.0544 0.0707 0.638 ncMono L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 2.12e-01 0.0802 0.0641 0.638 ncMono L2
ENSG00000162512 SDC3 -219175 sc-eQTL 3.57e-01 -0.0665 0.072 0.638 ncMono L2
ENSG00000162517 PEF1 -955313 sc-eQTL 4.27e-01 0.0657 0.0826 0.638 ncMono L2
ENSG00000168528 SERINC2 -719982 sc-eQTL 9.71e-01 0.00282 0.0787 0.638 ncMono L2
ENSG00000284543 LINC01226 -816643 sc-eQTL 5.52e-01 0.0468 0.0786 0.638 ncMono L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.59e-01 0.036 0.0815 0.638 ncMono L2
ENSG00000060688 SNRNP40 -607205 sc-eQTL 9.06e-02 -0.154 0.0906 0.641 pDC L2
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 3.18e-01 -0.1 0.1 0.641 pDC L2
ENSG00000134644 PUM1 -376408 sc-eQTL 7.21e-01 -0.0298 0.0831 0.641 pDC L2
ENSG00000162511 LAPTM5 -68191 sc-eQTL 8.91e-01 -0.0106 0.0773 0.641 pDC L2
ENSG00000162517 PEF1 -955313 sc-eQTL 3.06e-01 0.103 0.1 0.641 pDC L2
ENSG00000168528 SERINC2 -719982 sc-eQTL 4.11e-01 -0.0771 0.0936 0.641 pDC L2
ENSG00000284543 LINC01226 -816643 sc-eQTL 1.19e-01 -0.113 0.0722 0.641 pDC L2
ENSG00000287510 AL137857.1 -42110 sc-eQTL 3.44e-01 -0.081 0.0854 0.641 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -607205 sc-eQTL 4.23e-01 -0.0751 0.0935 0.637 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 8.69e-01 -0.0129 0.0779 0.637 B_Memory LOneK1K
ENSG00000134644 PUM1 -376408 sc-eQTL 7.25e-01 -0.0244 0.069 0.637 B_Memory LOneK1K
ENSG00000162510 MATN1 -34002 sc-eQTL 6.10e-01 -0.0402 0.0787 0.637 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -68191 sc-eQTL 2.80e-01 0.0535 0.0493 0.637 B_Memory LOneK1K
ENSG00000162517 PEF1 -955313 sc-eQTL 6.41e-01 0.0382 0.0819 0.637 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 5.59e-01 0.0383 0.0654 0.637 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -42110 sc-eQTL 7.98e-01 0.0182 0.0713 0.637 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -607205 sc-eQTL 4.02e-02 0.167 0.0809 0.637 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 2.47e-01 -0.0748 0.0644 0.637 B_Naive LOneK1K
ENSG00000134644 PUM1 -376408 sc-eQTL 1.03e-01 -0.0994 0.0607 0.637 B_Naive LOneK1K
ENSG00000162510 MATN1 -34002 sc-eQTL 2.30e-01 -0.0706 0.0587 0.637 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -68191 sc-eQTL 7.67e-01 0.0123 0.0414 0.637 B_Naive LOneK1K
ENSG00000162517 PEF1 -955313 sc-eQTL 9.50e-01 -0.00479 0.0757 0.637 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 3.11e-01 0.0542 0.0534 0.637 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -42110 sc-eQTL 2.88e-01 0.0675 0.0634 0.637 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -607205 sc-eQTL 8.68e-01 -0.0117 0.07 0.637 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 9.40e-01 -0.00595 0.0793 0.637 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -376408 sc-eQTL 2.14e-01 0.0629 0.0504 0.637 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -68191 sc-eQTL 6.35e-01 0.0212 0.0445 0.637 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -219175 sc-eQTL 7.88e-01 0.0244 0.0907 0.637 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -955313 sc-eQTL 6.35e-01 -0.0303 0.0638 0.637 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -719982 sc-eQTL 6.36e-01 -0.0443 0.0933 0.637 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -816643 sc-eQTL 4.37e-01 -0.0595 0.0764 0.637 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -42110 sc-eQTL 6.51e-01 -0.0325 0.0716 0.637 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -607205 sc-eQTL 2.53e-01 0.0886 0.0773 0.636 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 4.87e-01 -0.059 0.0847 0.636 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -376408 sc-eQTL 9.48e-01 0.00452 0.0695 0.636 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -68191 sc-eQTL 5.06e-01 0.037 0.0555 0.636 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -219175 sc-eQTL 3.87e-01 -0.0703 0.0811 0.636 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -955313 sc-eQTL 5.46e-01 0.0446 0.0737 0.636 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -719982 sc-eQTL 8.23e-01 0.0188 0.0842 0.636 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -816643 sc-eQTL 8.81e-01 -0.012 0.0799 0.636 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -42110 sc-eQTL 8.93e-01 -0.0108 0.08 0.636 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -607205 sc-eQTL 5.10e-02 0.165 0.0842 0.636 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -607399 sc-eQTL 4.51e-02 -0.116 0.0575 0.636 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -376408 sc-eQTL 8.80e-01 -0.00963 0.0636 0.636 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -68191 sc-eQTL 1.93e-01 0.0923 0.0708 0.636 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -955313 sc-eQTL 8.00e-01 0.0137 0.054 0.636 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -28921 sc-eQTL 4.53e-01 0.0615 0.0819 0.636 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -42110 sc-eQTL 4.80e-01 0.05 0.0707 0.636 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -68191 eQTL 0.00206 -0.0325 0.0105 0.0 0.0 0.331
ENSG00000162517 PEF1 -955313 eQTL 0.0252 0.0352 0.0157 0.0 0.0 0.331

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -68191 1.1e-05 1.14e-05 8.92e-07 4.02e-06 1.1e-06 3.71e-06 7.68e-06 1.01e-06 4.65e-06 2.82e-06 8.28e-06 2.83e-06 1.13e-05 3.17e-06 1.04e-06 3.32e-06 1.9e-06 3.8e-06 1.41e-06 1.09e-06 2.91e-06 5.62e-06 4.77e-06 1.82e-06 9.14e-06 1.48e-06 2.25e-06 1.65e-06 4.51e-06 5.45e-06 3.24e-06 3.98e-07 6.21e-07 1.83e-06 2.07e-06 9.71e-07 8.92e-07 4.57e-07 1.34e-06 5.49e-07 2.74e-07 9.72e-06 8.75e-07 1.93e-07 3.64e-07 3.22e-07 8.3e-07 2.64e-07 2.22e-07