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Genes within 1Mb (chr1:30666733:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -630055 sc-eQTL 7.38e-01 -0.0249 0.0745 0.462 B L1
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 5.97e-01 -0.0316 0.0597 0.462 B L1
ENSG00000134644 PUM1 -399258 sc-eQTL 8.12e-01 -0.0119 0.0501 0.462 B L1
ENSG00000162510 MATN1 -56852 sc-eQTL 7.99e-01 0.0134 0.0526 0.462 B L1
ENSG00000162511 LAPTM5 -91041 sc-eQTL 1.46e-01 0.0599 0.041 0.462 B L1
ENSG00000162517 PEF1 -978163 sc-eQTL 8.58e-01 0.0111 0.0622 0.462 B L1
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 8.59e-01 0.00862 0.0483 0.462 B L1
ENSG00000287510 AL137857.1 -64960 sc-eQTL 1.42e-01 0.0839 0.0569 0.462 B L1
ENSG00000060688 SNRNP40 -630055 sc-eQTL 5.47e-01 0.0391 0.0648 0.462 CD4T L1
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 5.04e-02 0.0988 0.0502 0.462 CD4T L1
ENSG00000134644 PUM1 -399258 sc-eQTL 3.73e-01 -0.0402 0.045 0.462 CD4T L1
ENSG00000162511 LAPTM5 -91041 sc-eQTL 3.72e-01 0.0446 0.0499 0.462 CD4T L1
ENSG00000162517 PEF1 -978163 sc-eQTL 8.22e-01 -0.0118 0.0522 0.462 CD4T L1
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 9.43e-01 0.00322 0.0447 0.462 CD4T L1
ENSG00000287510 AL137857.1 -64960 sc-eQTL 9.48e-01 0.00349 0.0535 0.462 CD4T L1
ENSG00000060688 SNRNP40 -630055 sc-eQTL 4.81e-01 -0.0608 0.0861 0.462 CD8T L1
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 8.28e-01 -0.0125 0.0574 0.462 CD8T L1
ENSG00000134644 PUM1 -399258 sc-eQTL 6.64e-01 0.022 0.0505 0.462 CD8T L1
ENSG00000162511 LAPTM5 -91041 sc-eQTL 7.89e-01 0.0131 0.049 0.462 CD8T L1
ENSG00000162517 PEF1 -978163 sc-eQTL 1.67e-01 -0.0834 0.0602 0.462 CD8T L1
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 4.65e-01 -0.042 0.0574 0.462 CD8T L1
ENSG00000287510 AL137857.1 -64960 sc-eQTL 7.78e-01 0.0204 0.0722 0.462 CD8T L1
ENSG00000060688 SNRNP40 -630055 sc-eQTL 1.95e-01 -0.098 0.0753 0.457 DC L1
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.90e-01 -0.0946 0.0893 0.457 DC L1
ENSG00000134644 PUM1 -399258 sc-eQTL 3.87e-01 -0.0607 0.07 0.457 DC L1
ENSG00000162511 LAPTM5 -91041 sc-eQTL 2.28e-01 0.0603 0.0499 0.457 DC L1
ENSG00000162517 PEF1 -978163 sc-eQTL 8.42e-01 -0.0162 0.0812 0.457 DC L1
ENSG00000168528 SERINC2 -742832 sc-eQTL 6.81e-01 0.034 0.0825 0.457 DC L1
ENSG00000284543 LINC01226 -839493 sc-eQTL 9.39e-01 0.00422 0.0547 0.457 DC L1
ENSG00000287510 AL137857.1 -64960 sc-eQTL 2.95e-01 -0.083 0.079 0.457 DC L1
ENSG00000060688 SNRNP40 -630055 sc-eQTL 4.75e-02 0.116 0.0584 0.462 Mono L1
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 4.20e-01 0.0589 0.0729 0.462 Mono L1
ENSG00000134644 PUM1 -399258 sc-eQTL 7.23e-01 -0.0166 0.0468 0.462 Mono L1
ENSG00000162511 LAPTM5 -91041 sc-eQTL 7.86e-01 -0.0117 0.0431 0.462 Mono L1
ENSG00000162512 SDC3 -242025 sc-eQTL 1.67e-01 -0.114 0.0824 0.462 Mono L1
ENSG00000162517 PEF1 -978163 sc-eQTL 4.77e-01 -0.0413 0.058 0.462 Mono L1
ENSG00000168528 SERINC2 -742832 sc-eQTL 5.36e-01 0.055 0.0887 0.462 Mono L1
ENSG00000284543 LINC01226 -839493 sc-eQTL 7.71e-01 -0.0228 0.0782 0.462 Mono L1
ENSG00000287510 AL137857.1 -64960 sc-eQTL 9.55e-01 0.00388 0.0684 0.462 Mono L1
ENSG00000060688 SNRNP40 -630055 sc-eQTL 2.63e-02 0.187 0.0835 0.459 NK L1
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 8.97e-02 -0.0979 0.0574 0.459 NK L1
ENSG00000134644 PUM1 -399258 sc-eQTL 3.35e-01 -0.0585 0.0605 0.459 NK L1
ENSG00000162511 LAPTM5 -91041 sc-eQTL 9.17e-02 0.117 0.0693 0.459 NK L1
ENSG00000162517 PEF1 -978163 sc-eQTL 7.41e-01 0.0168 0.051 0.459 NK L1
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 7.90e-01 0.0209 0.0784 0.459 NK L1
ENSG00000287510 AL137857.1 -64960 sc-eQTL 6.33e-01 0.0346 0.0724 0.459 NK L1
ENSG00000060688 SNRNP40 -630055 sc-eQTL 7.13e-01 0.0223 0.0606 0.462 Other_T L1
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 1.40e-01 -0.0955 0.0645 0.462 Other_T L1
ENSG00000134644 PUM1 -399258 sc-eQTL 8.66e-01 -0.00985 0.0583 0.462 Other_T L1
ENSG00000162511 LAPTM5 -91041 sc-eQTL 1.83e-01 0.0635 0.0476 0.462 Other_T L1
ENSG00000162517 PEF1 -978163 sc-eQTL 6.10e-01 -0.0326 0.0638 0.462 Other_T L1
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 9.73e-01 0.00261 0.0782 0.462 Other_T L1
ENSG00000287510 AL137857.1 -64960 sc-eQTL 4.83e-01 0.0572 0.0814 0.462 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -630055 sc-eQTL 9.55e-01 -0.00555 0.0992 0.477 B_Activated L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.95e-01 0.105 0.0998 0.477 B_Activated L2
ENSG00000134644 PUM1 -399258 sc-eQTL 4.78e-01 -0.0661 0.0929 0.477 B_Activated L2
ENSG00000162510 MATN1 -56852 sc-eQTL 5.60e-01 -0.0474 0.0812 0.477 B_Activated L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 4.55e-01 0.0424 0.0566 0.477 B_Activated L2
ENSG00000162517 PEF1 -978163 sc-eQTL 3.04e-01 0.0992 0.0962 0.477 B_Activated L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 1.88e-01 0.12 0.0911 0.477 B_Activated L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 1.43e-01 0.119 0.0805 0.477 B_Activated L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 5.63e-01 -0.0531 0.0915 0.461 B_Intermediate L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 6.87e-01 -0.0308 0.0763 0.461 B_Intermediate L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.34e-01 -0.0449 0.0719 0.461 B_Intermediate L2
ENSG00000162510 MATN1 -56852 sc-eQTL 2.68e-01 0.083 0.0747 0.461 B_Intermediate L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 6.11e-02 0.0859 0.0456 0.461 B_Intermediate L2
ENSG00000162517 PEF1 -978163 sc-eQTL 6.03e-01 0.0445 0.0853 0.461 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 2.77e-01 -0.0702 0.0644 0.461 B_Intermediate L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 9.85e-01 -0.0014 0.0722 0.461 B_Intermediate L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 3.14e-01 -0.0901 0.0893 0.459 B_Memory L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.40e-01 0.0968 0.0822 0.459 B_Memory L2
ENSG00000134644 PUM1 -399258 sc-eQTL 7.94e-01 0.0187 0.0718 0.459 B_Memory L2
ENSG00000162510 MATN1 -56852 sc-eQTL 9.03e-01 0.00838 0.0687 0.459 B_Memory L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 4.59e-01 0.0451 0.0608 0.459 B_Memory L2
ENSG00000162517 PEF1 -978163 sc-eQTL 8.33e-01 -0.0172 0.0813 0.459 B_Memory L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 7.70e-01 0.0203 0.0696 0.459 B_Memory L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 8.94e-01 -0.0109 0.0816 0.459 B_Memory L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 2.43e-01 0.0948 0.081 0.462 B_Naive1 L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 6.92e-01 0.0278 0.0701 0.462 B_Naive1 L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.84e-01 0.034 0.0619 0.462 B_Naive1 L2
ENSG00000162510 MATN1 -56852 sc-eQTL 6.42e-01 -0.0292 0.0628 0.462 B_Naive1 L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 3.12e-02 0.09 0.0415 0.462 B_Naive1 L2
ENSG00000162517 PEF1 -978163 sc-eQTL 4.72e-01 0.0532 0.0739 0.462 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 7.26e-01 -0.0194 0.0551 0.462 B_Naive1 L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 5.96e-02 0.128 0.0675 0.462 B_Naive1 L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 4.55e-01 -0.0654 0.0873 0.459 B_Naive2 L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 4.45e-02 -0.145 0.0715 0.459 B_Naive2 L2
ENSG00000134644 PUM1 -399258 sc-eQTL 6.29e-02 -0.131 0.0701 0.459 B_Naive2 L2
ENSG00000162510 MATN1 -56852 sc-eQTL 7.98e-01 0.0174 0.0678 0.459 B_Naive2 L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 4.01e-02 0.0942 0.0456 0.459 B_Naive2 L2
ENSG00000162517 PEF1 -978163 sc-eQTL 9.21e-01 -0.00836 0.0838 0.459 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 9.25e-01 0.00632 0.0671 0.459 B_Naive2 L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 5.39e-01 0.0446 0.0724 0.459 B_Naive2 L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 5.61e-01 -0.0506 0.0869 0.466 CD4_CTL L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 8.60e-01 0.0151 0.0855 0.466 CD4_CTL L2
ENSG00000134644 PUM1 -399258 sc-eQTL 2.90e-01 0.0888 0.0836 0.466 CD4_CTL L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 5.76e-01 0.0419 0.0747 0.466 CD4_CTL L2
ENSG00000162517 PEF1 -978163 sc-eQTL 7.55e-01 -0.0239 0.0766 0.466 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 3.91e-02 0.168 0.0809 0.466 CD4_CTL L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 5.41e-01 0.0441 0.0721 0.466 CD4_CTL L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 8.55e-01 0.0123 0.0675 0.462 CD4_Naive L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 1.46e-01 0.0869 0.0595 0.462 CD4_Naive L2
ENSG00000134644 PUM1 -399258 sc-eQTL 4.32e-01 -0.0375 0.0477 0.462 CD4_Naive L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 2.74e-01 0.0559 0.051 0.462 CD4_Naive L2
ENSG00000162517 PEF1 -978163 sc-eQTL 8.17e-01 0.013 0.0561 0.462 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 8.96e-01 0.00682 0.0519 0.462 CD4_Naive L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 2.31e-01 0.0715 0.0595 0.462 CD4_Naive L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 3.55e-01 0.0792 0.0854 0.462 CD4_TCM L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 6.91e-01 -0.0275 0.069 0.462 CD4_TCM L2
ENSG00000134644 PUM1 -399258 sc-eQTL 6.51e-01 0.0277 0.0611 0.462 CD4_TCM L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 8.56e-01 -0.00923 0.0507 0.462 CD4_TCM L2
ENSG00000162517 PEF1 -978163 sc-eQTL 4.84e-01 -0.0475 0.0679 0.462 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 6.43e-01 -0.0299 0.0643 0.462 CD4_TCM L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 7.75e-02 -0.126 0.0711 0.462 CD4_TCM L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 6.86e-01 0.0349 0.0863 0.462 CD4_TEM L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 3.88e-02 0.169 0.0814 0.462 CD4_TEM L2
ENSG00000134644 PUM1 -399258 sc-eQTL 7.32e-01 0.0235 0.0685 0.462 CD4_TEM L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 1.24e-01 0.106 0.0689 0.462 CD4_TEM L2
ENSG00000162517 PEF1 -978163 sc-eQTL 8.38e-01 -0.0159 0.0776 0.462 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 4.96e-01 -0.0552 0.081 0.462 CD4_TEM L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 3.34e-01 -0.0772 0.0797 0.462 CD4_TEM L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 3.61e-01 -0.0847 0.0924 0.462 CD8_CTL L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 5.11e-01 0.0467 0.0709 0.462 CD8_CTL L2
ENSG00000134644 PUM1 -399258 sc-eQTL 9.24e-02 0.116 0.0685 0.462 CD8_CTL L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 8.61e-01 0.0134 0.0764 0.462 CD8_CTL L2
ENSG00000162517 PEF1 -978163 sc-eQTL 9.97e-01 0.000223 0.0665 0.462 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 4.35e-01 -0.0627 0.0802 0.462 CD8_CTL L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 9.08e-01 -0.00874 0.0755 0.462 CD8_CTL L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 4.03e-01 -0.0706 0.0842 0.462 CD8_Naive L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.00e-01 -0.0931 0.0725 0.462 CD8_Naive L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.56e-01 -0.0345 0.0585 0.462 CD8_Naive L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 1.39e-01 0.0829 0.0558 0.462 CD8_Naive L2
ENSG00000162517 PEF1 -978163 sc-eQTL 8.81e-01 -0.0117 0.078 0.462 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 4.68e-01 0.0508 0.07 0.462 CD8_Naive L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 6.32e-01 0.0365 0.0762 0.462 CD8_Naive L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 5.09e-01 -0.0626 0.0946 0.468 CD8_TCM L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 5.15e-01 0.0566 0.0867 0.468 CD8_TCM L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.72e-01 -0.0462 0.0815 0.468 CD8_TCM L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 5.25e-01 0.0544 0.0853 0.468 CD8_TCM L2
ENSG00000162517 PEF1 -978163 sc-eQTL 2.21e-01 -0.107 0.087 0.468 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 3.60e-01 -0.0724 0.0789 0.468 CD8_TCM L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 4.25e-01 -0.0638 0.0798 0.468 CD8_TCM L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 9.61e-01 0.00434 0.0887 0.454 CD8_TEM L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 8.84e-01 -0.0124 0.085 0.454 CD8_TEM L2
ENSG00000134644 PUM1 -399258 sc-eQTL 7.74e-01 -0.025 0.0869 0.454 CD8_TEM L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 2.30e-01 0.0981 0.0814 0.454 CD8_TEM L2
ENSG00000162517 PEF1 -978163 sc-eQTL 8.98e-02 -0.13 0.0764 0.454 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 3.44e-01 -0.0803 0.0846 0.454 CD8_TEM L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 6.97e-01 -0.03 0.0767 0.454 CD8_TEM L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 6.57e-01 0.04 0.0898 0.463 MAIT L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 7.40e-01 -0.0265 0.0796 0.463 MAIT L2
ENSG00000134644 PUM1 -399258 sc-eQTL 9.56e-01 0.00422 0.0763 0.463 MAIT L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 4.21e-02 0.146 0.0713 0.463 MAIT L2
ENSG00000162517 PEF1 -978163 sc-eQTL 3.54e-01 -0.0733 0.0789 0.463 MAIT L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 9.60e-01 -0.00407 0.0802 0.463 MAIT L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 6.52e-01 -0.0373 0.0826 0.463 MAIT L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 1.23e-01 0.142 0.0918 0.462 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 1.91e-01 -0.102 0.0777 0.462 NK_CD56bright L2
ENSG00000134644 PUM1 -399258 sc-eQTL 1.18e-01 0.128 0.0814 0.462 NK_CD56bright L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 3.97e-01 0.0684 0.0807 0.462 NK_CD56bright L2
ENSG00000162517 PEF1 -978163 sc-eQTL 8.98e-01 0.01 0.0785 0.462 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 2.30e-01 -0.0975 0.0809 0.462 NK_CD56bright L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 7.57e-01 -0.0248 0.08 0.462 NK_CD56bright L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 8.92e-01 0.0121 0.0891 0.461 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 1.59e-01 -0.0927 0.0656 0.461 NK_CD56dim L2
ENSG00000134644 PUM1 -399258 sc-eQTL 2.87e-01 -0.072 0.0675 0.461 NK_CD56dim L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 7.61e-02 0.128 0.0716 0.461 NK_CD56dim L2
ENSG00000162517 PEF1 -978163 sc-eQTL 6.46e-01 0.0295 0.0641 0.461 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 8.36e-01 0.0188 0.0904 0.461 NK_CD56dim L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 1.42e-01 0.109 0.0742 0.461 NK_CD56dim L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 7.78e-01 -0.0266 0.094 0.461 NK_HLA L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 7.01e-01 0.0323 0.0839 0.461 NK_HLA L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.50e-01 -0.049 0.0817 0.461 NK_HLA L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 2.07e-01 0.0984 0.0778 0.461 NK_HLA L2
ENSG00000162517 PEF1 -978163 sc-eQTL 2.61e-01 -0.0988 0.0877 0.461 NK_HLA L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 5.47e-01 0.0501 0.083 0.461 NK_HLA L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 5.67e-01 0.046 0.0803 0.461 NK_HLA L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 9.27e-02 0.146 0.0865 0.461 NK_cytokine L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 9.13e-01 -0.00746 0.0679 0.461 NK_cytokine L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.47e-02 -0.141 0.0728 0.461 NK_cytokine L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 8.53e-02 0.139 0.0803 0.461 NK_cytokine L2
ENSG00000162517 PEF1 -978163 sc-eQTL 4.53e-01 -0.0518 0.0688 0.461 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 7.90e-01 0.0228 0.0857 0.461 NK_cytokine L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 8.09e-01 -0.0193 0.0797 0.461 NK_cytokine L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 1.95e-01 0.127 0.0976 0.47 PB L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 1.86e-01 -0.151 0.113 0.47 PB L2
ENSG00000134644 PUM1 -399258 sc-eQTL 2.04e-01 -0.126 0.0984 0.47 PB L2
ENSG00000162510 MATN1 -56852 sc-eQTL 3.81e-01 0.0809 0.0921 0.47 PB L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 6.44e-01 0.0306 0.0659 0.47 PB L2
ENSG00000162517 PEF1 -978163 sc-eQTL 4.46e-01 -0.0775 0.101 0.47 PB L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 7.75e-01 0.0258 0.0903 0.47 PB L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 8.11e-01 0.023 0.0961 0.47 PB L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 5.25e-01 -0.0432 0.0679 0.461 Pro_T L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 4.62e-01 -0.0635 0.0862 0.461 Pro_T L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.99e-01 0.0423 0.0804 0.461 Pro_T L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 3.46e-01 -0.0544 0.0576 0.461 Pro_T L2
ENSG00000162517 PEF1 -978163 sc-eQTL 7.96e-01 0.0219 0.0847 0.461 Pro_T L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 1.40e-01 -0.119 0.0803 0.461 Pro_T L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 7.45e-02 -0.132 0.0737 0.461 Pro_T L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 4.56e-01 -0.0649 0.0869 0.462 Treg L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 1.12e-01 0.133 0.0837 0.462 Treg L2
ENSG00000134644 PUM1 -399258 sc-eQTL 7.78e-01 -0.019 0.0674 0.462 Treg L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 4.01e-01 0.0649 0.077 0.462 Treg L2
ENSG00000162517 PEF1 -978163 sc-eQTL 2.76e-01 -0.0908 0.0831 0.462 Treg L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 5.48e-01 0.0473 0.0785 0.462 Treg L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 2.42e-01 0.0918 0.0783 0.462 Treg L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 4.36e-01 -0.0673 0.0862 0.466 cDC L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.82e-01 -0.101 0.0932 0.466 cDC L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.35e-01 -0.0499 0.0802 0.466 cDC L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 2.80e-01 0.0609 0.0561 0.466 cDC L2
ENSG00000162517 PEF1 -978163 sc-eQTL 3.04e-01 0.0838 0.0813 0.466 cDC L2
ENSG00000168528 SERINC2 -742832 sc-eQTL 3.13e-01 0.0729 0.0721 0.466 cDC L2
ENSG00000284543 LINC01226 -839493 sc-eQTL 9.74e-01 0.00236 0.071 0.466 cDC L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 6.06e-01 -0.0394 0.0764 0.466 cDC L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 1.20e-02 0.175 0.069 0.462 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 6.49e-01 0.0356 0.0781 0.462 cMono_IL1B L2
ENSG00000134644 PUM1 -399258 sc-eQTL 5.10e-01 0.0348 0.0528 0.462 cMono_IL1B L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 4.24e-01 -0.0371 0.0463 0.462 cMono_IL1B L2
ENSG00000162512 SDC3 -242025 sc-eQTL 5.76e-01 -0.0489 0.0873 0.462 cMono_IL1B L2
ENSG00000162517 PEF1 -978163 sc-eQTL 9.19e-01 0.00725 0.0714 0.462 cMono_IL1B L2
ENSG00000168528 SERINC2 -742832 sc-eQTL 3.50e-01 0.0828 0.0883 0.462 cMono_IL1B L2
ENSG00000284543 LINC01226 -839493 sc-eQTL 9.57e-01 -0.00418 0.0782 0.462 cMono_IL1B L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 6.82e-01 0.03 0.0729 0.462 cMono_IL1B L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 1.71e-01 0.1 0.0731 0.462 cMono_S100A L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 3.31e-01 0.0843 0.0865 0.462 cMono_S100A L2
ENSG00000134644 PUM1 -399258 sc-eQTL 7.06e-01 -0.0236 0.0627 0.462 cMono_S100A L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 8.29e-01 -0.0104 0.0482 0.462 cMono_S100A L2
ENSG00000162512 SDC3 -242025 sc-eQTL 6.74e-01 -0.0351 0.0832 0.462 cMono_S100A L2
ENSG00000162517 PEF1 -978163 sc-eQTL 2.93e-01 -0.0791 0.0749 0.462 cMono_S100A L2
ENSG00000168528 SERINC2 -742832 sc-eQTL 4.93e-01 0.0605 0.088 0.462 cMono_S100A L2
ENSG00000284543 LINC01226 -839493 sc-eQTL 6.10e-01 -0.0365 0.0715 0.462 cMono_S100A L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 4.42e-01 -0.0553 0.0718 0.462 cMono_S100A L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 6.51e-01 0.0484 0.107 0.473 gdT L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 4.04e-01 0.0767 0.0915 0.473 gdT L2
ENSG00000134644 PUM1 -399258 sc-eQTL 6.04e-01 0.0491 0.0945 0.473 gdT L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 6.71e-01 -0.0437 0.103 0.473 gdT L2
ENSG00000162517 PEF1 -978163 sc-eQTL 9.70e-01 0.00353 0.094 0.473 gdT L2
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 3.13e-01 -0.0958 0.0945 0.473 gdT L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 7.04e-01 0.0349 0.0918 0.473 gdT L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 6.15e-01 0.0416 0.0826 0.458 intMono L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 8.78e-01 -0.0136 0.0889 0.458 intMono L2
ENSG00000134644 PUM1 -399258 sc-eQTL 6.90e-02 -0.137 0.0748 0.458 intMono L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 3.34e-01 0.0571 0.059 0.458 intMono L2
ENSG00000162512 SDC3 -242025 sc-eQTL 7.48e-02 -0.144 0.0804 0.458 intMono L2
ENSG00000162517 PEF1 -978163 sc-eQTL 8.16e-02 0.148 0.0845 0.458 intMono L2
ENSG00000168528 SERINC2 -742832 sc-eQTL 5.02e-01 0.057 0.0847 0.458 intMono L2
ENSG00000284543 LINC01226 -839493 sc-eQTL 5.22e-01 0.0515 0.0803 0.458 intMono L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 7.38e-02 0.143 0.0797 0.458 intMono L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 2.65e-01 -0.0863 0.0772 0.462 ncMono L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.79e-01 0.0894 0.0823 0.462 ncMono L2
ENSG00000134644 PUM1 -399258 sc-eQTL 7.65e-01 -0.0202 0.0674 0.462 ncMono L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 9.25e-01 0.00579 0.0613 0.462 ncMono L2
ENSG00000162512 SDC3 -242025 sc-eQTL 2.63e-01 -0.0768 0.0685 0.462 ncMono L2
ENSG00000162517 PEF1 -978163 sc-eQTL 5.75e-01 0.0442 0.0787 0.462 ncMono L2
ENSG00000168528 SERINC2 -742832 sc-eQTL 7.76e-01 0.0214 0.075 0.462 ncMono L2
ENSG00000284543 LINC01226 -839493 sc-eQTL 9.38e-01 0.00585 0.0749 0.462 ncMono L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 9.31e-01 -0.00676 0.0777 0.462 ncMono L2
ENSG00000060688 SNRNP40 -630055 sc-eQTL 1.20e-01 -0.131 0.084 0.463 pDC L2
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 9.70e-01 -0.00349 0.0929 0.463 pDC L2
ENSG00000134644 PUM1 -399258 sc-eQTL 9.47e-01 0.00514 0.077 0.463 pDC L2
ENSG00000162511 LAPTM5 -91041 sc-eQTL 8.47e-01 0.0138 0.0716 0.463 pDC L2
ENSG00000162517 PEF1 -978163 sc-eQTL 3.98e-01 -0.0786 0.0927 0.463 pDC L2
ENSG00000168528 SERINC2 -742832 sc-eQTL 6.77e-01 0.0363 0.0868 0.463 pDC L2
ENSG00000284543 LINC01226 -839493 sc-eQTL 3.54e-01 -0.0624 0.0672 0.463 pDC L2
ENSG00000287510 AL137857.1 -64960 sc-eQTL 4.88e-01 -0.055 0.0792 0.463 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -630055 sc-eQTL 3.36e-01 -0.0835 0.0866 0.462 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 9.23e-01 0.00696 0.0723 0.462 B_Memory LOneK1K
ENSG00000134644 PUM1 -399258 sc-eQTL 7.75e-01 -0.0183 0.064 0.462 B_Memory LOneK1K
ENSG00000162510 MATN1 -56852 sc-eQTL 8.03e-01 0.0182 0.073 0.462 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -91041 sc-eQTL 4.82e-02 0.0903 0.0455 0.462 B_Memory LOneK1K
ENSG00000162517 PEF1 -978163 sc-eQTL 5.14e-01 -0.0496 0.0759 0.462 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 7.66e-01 0.0181 0.0607 0.462 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -64960 sc-eQTL 5.30e-01 0.0416 0.0661 0.462 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -630055 sc-eQTL 5.51e-01 0.047 0.0787 0.462 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 4.72e-01 -0.0449 0.0622 0.462 B_Naive LOneK1K
ENSG00000134644 PUM1 -399258 sc-eQTL 8.33e-01 0.0124 0.0589 0.462 B_Naive LOneK1K
ENSG00000162510 MATN1 -56852 sc-eQTL 7.89e-01 -0.0152 0.0567 0.462 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -91041 sc-eQTL 2.02e-02 0.0923 0.0394 0.462 B_Naive LOneK1K
ENSG00000162517 PEF1 -978163 sc-eQTL 4.77e-01 0.0519 0.0728 0.462 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 5.78e-01 -0.0287 0.0515 0.462 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -64960 sc-eQTL 9.19e-02 0.103 0.0609 0.462 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -630055 sc-eQTL 1.84e-02 0.157 0.066 0.462 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.81e-01 0.0815 0.0755 0.462 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -399258 sc-eQTL 5.86e-01 0.0263 0.0483 0.462 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -91041 sc-eQTL 9.73e-01 -0.00145 0.0424 0.462 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -242025 sc-eQTL 6.49e-01 -0.0394 0.0866 0.462 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -978163 sc-eQTL 3.31e-01 -0.0592 0.0607 0.462 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -742832 sc-eQTL 4.80e-01 0.0629 0.089 0.462 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -839493 sc-eQTL 6.50e-01 -0.0331 0.073 0.462 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -64960 sc-eQTL 9.19e-01 0.00698 0.0684 0.462 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -630055 sc-eQTL 8.38e-01 -0.015 0.0736 0.457 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 8.15e-01 -0.0189 0.0805 0.457 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -399258 sc-eQTL 9.34e-02 -0.11 0.0655 0.457 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -91041 sc-eQTL 7.38e-01 0.0177 0.0528 0.457 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -242025 sc-eQTL 5.34e-02 -0.148 0.0764 0.457 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -978163 sc-eQTL 4.93e-01 0.0481 0.07 0.457 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -742832 sc-eQTL 8.93e-01 0.0108 0.08 0.457 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -839493 sc-eQTL 6.00e-01 0.0398 0.0758 0.457 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -64960 sc-eQTL 5.09e-01 0.0502 0.0759 0.457 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -630055 sc-eQTL 6.23e-02 0.157 0.084 0.461 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -630249 sc-eQTL 2.18e-01 -0.0712 0.0577 0.461 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -399258 sc-eQTL 1.66e-01 -0.0877 0.0631 0.461 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -91041 sc-eQTL 1.38e-01 0.105 0.0705 0.461 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -978163 sc-eQTL 7.77e-01 -0.0153 0.0538 0.461 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -51771 sc-eQTL 5.10e-01 0.0539 0.0817 0.461 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -64960 sc-eQTL 4.87e-01 0.0491 0.0705 0.461 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -91041 eQTL 0.0389 -0.02 0.00967 0.0 0.0 0.477
ENSG00000162517 PEF1 -978163 eQTL 0.00725 0.0387 0.0144 0.0 0.00118 0.477

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina