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Genes within 1Mb (chr1:30663039:A:AG):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -633749 sc-eQTL 1.60e-01 0.11 0.0782 0.639 B L1
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 5.03e-01 -0.0422 0.0629 0.639 B L1
ENSG00000134644 PUM1 -402952 sc-eQTL 2.69e-01 -0.0583 0.0526 0.639 B L1
ENSG00000162510 MATN1 -60546 sc-eQTL 6.35e-01 -0.0263 0.0555 0.639 B L1
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.10e-01 0.0694 0.0432 0.639 B L1
ENSG00000162517 PEF1 -981857 sc-eQTL 7.72e-01 0.019 0.0656 0.639 B L1
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 3.46e-01 0.048 0.0508 0.639 B L1
ENSG00000287510 AL137857.1 -68654 sc-eQTL 1.02e-01 0.0984 0.0599 0.639 B L1
ENSG00000060688 SNRNP40 -633749 sc-eQTL 9.41e-01 0.00507 0.0685 0.639 CD4T L1
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 2.95e-01 0.056 0.0533 0.639 CD4T L1
ENSG00000134644 PUM1 -402952 sc-eQTL 9.77e-01 0.00136 0.0476 0.639 CD4T L1
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.43e-01 0.0771 0.0525 0.639 CD4T L1
ENSG00000162517 PEF1 -981857 sc-eQTL 4.98e-01 -0.0375 0.0551 0.639 CD4T L1
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 3.08e-01 0.0482 0.0471 0.639 CD4T L1
ENSG00000287510 AL137857.1 -68654 sc-eQTL 9.90e-01 0.000687 0.0565 0.639 CD4T L1
ENSG00000060688 SNRNP40 -633749 sc-eQTL 9.27e-01 0.00837 0.0916 0.639 CD8T L1
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 8.01e-01 -0.0154 0.061 0.639 CD8T L1
ENSG00000134644 PUM1 -402952 sc-eQTL 4.55e-01 0.0401 0.0536 0.639 CD8T L1
ENSG00000162511 LAPTM5 -94735 sc-eQTL 6.55e-01 0.0233 0.0521 0.639 CD8T L1
ENSG00000162517 PEF1 -981857 sc-eQTL 8.14e-01 -0.0151 0.0642 0.639 CD8T L1
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 5.54e-01 -0.0362 0.061 0.639 CD8T L1
ENSG00000287510 AL137857.1 -68654 sc-eQTL 9.62e-01 -0.00367 0.0768 0.639 CD8T L1
ENSG00000060688 SNRNP40 -633749 sc-eQTL 5.10e-01 -0.0547 0.0829 0.642 DC L1
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 1.93e-01 -0.128 0.0978 0.642 DC L1
ENSG00000134644 PUM1 -402952 sc-eQTL 1.30e-02 -0.19 0.0757 0.642 DC L1
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.73e-01 0.0747 0.0547 0.642 DC L1
ENSG00000162517 PEF1 -981857 sc-eQTL 3.66e-01 0.0806 0.0889 0.642 DC L1
ENSG00000168528 SERINC2 -746526 sc-eQTL 6.82e-01 0.0371 0.0905 0.642 DC L1
ENSG00000284543 LINC01226 -843187 sc-eQTL 7.26e-01 0.021 0.06 0.642 DC L1
ENSG00000287510 AL137857.1 -68654 sc-eQTL 9.21e-01 -0.00864 0.0869 0.642 DC L1
ENSG00000060688 SNRNP40 -633749 sc-eQTL 7.67e-01 0.0185 0.0625 0.639 Mono L1
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 6.57e-01 0.0344 0.0775 0.639 Mono L1
ENSG00000134644 PUM1 -402952 sc-eQTL 4.65e-01 0.0363 0.0496 0.639 Mono L1
ENSG00000162511 LAPTM5 -94735 sc-eQTL 6.36e-01 0.0217 0.0457 0.639 Mono L1
ENSG00000162512 SDC3 -245719 sc-eQTL 5.07e-01 -0.0583 0.0878 0.639 Mono L1
ENSG00000162517 PEF1 -981857 sc-eQTL 9.98e-01 -0.00018 0.0616 0.639 Mono L1
ENSG00000168528 SERINC2 -746526 sc-eQTL 8.38e-01 -0.0193 0.0943 0.639 Mono L1
ENSG00000284543 LINC01226 -843187 sc-eQTL 8.23e-01 0.0186 0.083 0.639 Mono L1
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.67e-01 -0.0312 0.0725 0.639 Mono L1
ENSG00000060688 SNRNP40 -633749 sc-eQTL 9.13e-02 0.147 0.0869 0.637 NK L1
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 3.59e-02 -0.125 0.0593 0.637 NK L1
ENSG00000134644 PUM1 -402952 sc-eQTL 5.89e-01 -0.034 0.0628 0.637 NK L1
ENSG00000162511 LAPTM5 -94735 sc-eQTL 5.31e-02 0.139 0.0717 0.637 NK L1
ENSG00000162517 PEF1 -981857 sc-eQTL 4.40e-01 0.0408 0.0527 0.637 NK L1
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 8.21e-01 0.0184 0.0813 0.637 NK L1
ENSG00000287510 AL137857.1 -68654 sc-eQTL 4.54e-01 0.0562 0.0749 0.637 NK L1
ENSG00000060688 SNRNP40 -633749 sc-eQTL 2.24e-01 0.0773 0.0634 0.639 Other_T L1
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.93e-01 0.0179 0.068 0.639 Other_T L1
ENSG00000134644 PUM1 -402952 sc-eQTL 9.39e-01 -0.00466 0.0611 0.639 Other_T L1
ENSG00000162511 LAPTM5 -94735 sc-eQTL 6.29e-02 0.0929 0.0497 0.639 Other_T L1
ENSG00000162517 PEF1 -981857 sc-eQTL 8.74e-01 -0.0106 0.0669 0.639 Other_T L1
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 2.96e-01 0.0858 0.0819 0.639 Other_T L1
ENSG00000287510 AL137857.1 -68654 sc-eQTL 2.65e-01 -0.0952 0.0852 0.639 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -633749 sc-eQTL 2.98e-01 -0.109 0.105 0.653 B_Activated L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 4.28e-01 0.0841 0.106 0.653 B_Activated L2
ENSG00000134644 PUM1 -402952 sc-eQTL 4.40e-01 -0.0763 0.0985 0.653 B_Activated L2
ENSG00000162510 MATN1 -60546 sc-eQTL 4.97e-01 -0.0585 0.0861 0.653 B_Activated L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 3.80e-01 0.0527 0.06 0.653 B_Activated L2
ENSG00000162517 PEF1 -981857 sc-eQTL 6.02e-01 0.0533 0.102 0.653 B_Activated L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 3.40e-01 0.0926 0.0968 0.653 B_Activated L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 4.25e-01 0.0686 0.0857 0.653 B_Activated L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 3.77e-01 -0.0858 0.097 0.639 B_Intermediate L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 6.21e-01 -0.0401 0.0809 0.639 B_Intermediate L2
ENSG00000134644 PUM1 -402952 sc-eQTL 5.70e-01 -0.0434 0.0763 0.639 B_Intermediate L2
ENSG00000162510 MATN1 -60546 sc-eQTL 9.39e-01 0.00613 0.0795 0.639 B_Intermediate L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.45e-01 0.071 0.0486 0.639 B_Intermediate L2
ENSG00000162517 PEF1 -981857 sc-eQTL 3.83e-01 0.0791 0.0904 0.639 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 5.36e-01 0.0424 0.0684 0.639 B_Intermediate L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.52e-01 0.0346 0.0766 0.639 B_Intermediate L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 7.77e-01 0.0276 0.0971 0.638 B_Memory L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.99e-01 -0.0228 0.0895 0.638 B_Memory L2
ENSG00000134644 PUM1 -402952 sc-eQTL 5.17e-01 0.0505 0.0778 0.638 B_Memory L2
ENSG00000162510 MATN1 -60546 sc-eQTL 9.78e-01 0.00207 0.0745 0.638 B_Memory L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 2.46e-01 0.0767 0.0658 0.638 B_Memory L2
ENSG00000162517 PEF1 -981857 sc-eQTL 9.49e-01 -0.00566 0.0882 0.638 B_Memory L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 3.55e-01 -0.07 0.0754 0.638 B_Memory L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.68e-01 -0.038 0.0885 0.638 B_Memory L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 1.69e-02 0.202 0.084 0.639 B_Naive1 L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 8.25e-01 0.0163 0.0735 0.639 B_Naive1 L2
ENSG00000134644 PUM1 -402952 sc-eQTL 6.69e-01 -0.0278 0.0648 0.639 B_Naive1 L2
ENSG00000162510 MATN1 -60546 sc-eQTL 5.33e-01 -0.0411 0.0657 0.639 B_Naive1 L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 2.47e-01 0.0508 0.0438 0.639 B_Naive1 L2
ENSG00000162517 PEF1 -981857 sc-eQTL 6.73e-01 0.0327 0.0774 0.639 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 4.68e-01 0.0419 0.0577 0.639 B_Naive1 L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 1.01e-02 0.182 0.0702 0.639 B_Naive1 L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 5.65e-01 -0.0526 0.0914 0.637 B_Naive2 L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 1.65e-01 -0.105 0.0752 0.637 B_Naive2 L2
ENSG00000134644 PUM1 -402952 sc-eQTL 7.20e-03 -0.197 0.0726 0.637 B_Naive2 L2
ENSG00000162510 MATN1 -60546 sc-eQTL 8.90e-01 0.00982 0.0709 0.637 B_Naive2 L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 6.56e-01 0.0215 0.0482 0.637 B_Naive2 L2
ENSG00000162517 PEF1 -981857 sc-eQTL 3.13e-01 -0.0885 0.0874 0.637 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 3.09e-01 0.0713 0.07 0.637 B_Naive2 L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 8.06e-01 0.0186 0.0758 0.637 B_Naive2 L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 4.33e-01 -0.0711 0.0905 0.645 CD4_CTL L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 9.12e-01 -0.00985 0.0892 0.645 CD4_CTL L2
ENSG00000134644 PUM1 -402952 sc-eQTL 7.82e-02 0.154 0.0867 0.645 CD4_CTL L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.23e-01 0.12 0.0775 0.645 CD4_CTL L2
ENSG00000162517 PEF1 -981857 sc-eQTL 6.44e-01 -0.0369 0.0799 0.645 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 1.47e-01 0.123 0.0848 0.645 CD4_CTL L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 9.50e-02 0.125 0.0747 0.645 CD4_CTL L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 6.65e-01 0.031 0.0716 0.639 CD4_Naive L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 3.11e-01 0.0643 0.0633 0.639 CD4_Naive L2
ENSG00000134644 PUM1 -402952 sc-eQTL 9.84e-01 0.00105 0.0507 0.639 CD4_Naive L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 7.45e-02 0.0966 0.0539 0.639 CD4_Naive L2
ENSG00000162517 PEF1 -981857 sc-eQTL 5.41e-01 -0.0364 0.0595 0.639 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 3.18e-01 0.055 0.055 0.639 CD4_Naive L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.54e-01 0.0284 0.0633 0.639 CD4_Naive L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 5.05e-01 -0.0597 0.0893 0.639 CD4_TCM L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.76e-01 -0.0205 0.0721 0.639 CD4_TCM L2
ENSG00000134644 PUM1 -402952 sc-eQTL 8.31e-01 0.0136 0.0638 0.639 CD4_TCM L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 8.52e-01 0.00991 0.0529 0.639 CD4_TCM L2
ENSG00000162517 PEF1 -981857 sc-eQTL 8.22e-01 -0.016 0.071 0.639 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 7.23e-01 0.0239 0.0672 0.639 CD4_TCM L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 4.93e-01 -0.0513 0.0747 0.639 CD4_TCM L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 3.15e-01 0.0908 0.0902 0.639 CD4_TEM L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 3.97e-01 0.073 0.086 0.639 CD4_TEM L2
ENSG00000134644 PUM1 -402952 sc-eQTL 5.82e-01 0.0395 0.0717 0.639 CD4_TEM L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.02e-01 0.118 0.0721 0.639 CD4_TEM L2
ENSG00000162517 PEF1 -981857 sc-eQTL 7.72e-01 0.0236 0.0813 0.639 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 2.79e-01 -0.092 0.0847 0.639 CD4_TEM L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 4.58e-01 -0.0622 0.0836 0.639 CD4_TEM L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 5.30e-01 -0.0616 0.098 0.639 CD8_CTL L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.10e-01 0.028 0.0752 0.639 CD8_CTL L2
ENSG00000134644 PUM1 -402952 sc-eQTL 8.10e-02 0.127 0.0725 0.639 CD8_CTL L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 2.98e-01 0.0841 0.0807 0.639 CD8_CTL L2
ENSG00000162517 PEF1 -981857 sc-eQTL 4.54e-01 0.0528 0.0703 0.639 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 6.15e-01 -0.0428 0.0849 0.639 CD8_CTL L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.48e-01 -0.0366 0.0799 0.639 CD8_CTL L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 7.88e-01 0.0243 0.09 0.639 CD8_Naive L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 5.04e-01 -0.0519 0.0775 0.639 CD8_Naive L2
ENSG00000134644 PUM1 -402952 sc-eQTL 8.72e-01 0.0101 0.0624 0.639 CD8_Naive L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 5.29e-01 0.0377 0.0598 0.639 CD8_Naive L2
ENSG00000162517 PEF1 -981857 sc-eQTL 8.09e-01 -0.0201 0.0832 0.639 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 5.10e-01 0.0492 0.0746 0.639 CD8_Naive L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 8.43e-01 -0.0161 0.0813 0.639 CD8_Naive L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 6.73e-01 -0.0431 0.102 0.644 CD8_TCM L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 4.84e-01 0.0654 0.0932 0.644 CD8_TCM L2
ENSG00000134644 PUM1 -402952 sc-eQTL 8.21e-01 0.0199 0.0878 0.644 CD8_TCM L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 2.20e-01 0.113 0.0915 0.644 CD8_TCM L2
ENSG00000162517 PEF1 -981857 sc-eQTL 4.75e-01 -0.0671 0.0938 0.644 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 2.14e-01 -0.106 0.0847 0.644 CD8_TCM L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 9.15e-01 -0.00914 0.086 0.644 CD8_TCM L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 7.46e-01 0.03 0.0926 0.628 CD8_TEM L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 3.98e-01 -0.0751 0.0887 0.628 CD8_TEM L2
ENSG00000134644 PUM1 -402952 sc-eQTL 5.74e-01 0.0511 0.0908 0.628 CD8_TEM L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 4.68e-01 -0.062 0.0853 0.628 CD8_TEM L2
ENSG00000162517 PEF1 -981857 sc-eQTL 4.37e-01 -0.0625 0.0803 0.628 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 1.60e-01 -0.124 0.0882 0.628 CD8_TEM L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.38e-01 0.0378 0.0802 0.628 CD8_TEM L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 8.74e-01 0.0149 0.0941 0.641 MAIT L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 6.03e-01 0.0434 0.0833 0.641 MAIT L2
ENSG00000134644 PUM1 -402952 sc-eQTL 8.18e-01 0.0184 0.0799 0.641 MAIT L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 3.98e-02 0.154 0.0746 0.641 MAIT L2
ENSG00000162517 PEF1 -981857 sc-eQTL 3.65e-01 -0.075 0.0827 0.641 MAIT L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 6.39e-01 0.0394 0.0839 0.641 MAIT L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 1.83e-01 -0.115 0.0861 0.641 MAIT L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 1.53e-01 0.138 0.096 0.644 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 1.71e-01 -0.111 0.0811 0.644 NK_CD56bright L2
ENSG00000134644 PUM1 -402952 sc-eQTL 5.80e-01 0.0474 0.0855 0.644 NK_CD56bright L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 2.51e-01 0.0969 0.0842 0.644 NK_CD56bright L2
ENSG00000162517 PEF1 -981857 sc-eQTL 8.33e-01 0.0173 0.082 0.644 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 9.64e-03 -0.218 0.0834 0.644 NK_CD56bright L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 8.04e-01 -0.0208 0.0836 0.644 NK_CD56bright L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 9.61e-01 0.00452 0.0929 0.638 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 2.42e-02 -0.154 0.0678 0.638 NK_CD56dim L2
ENSG00000134644 PUM1 -402952 sc-eQTL 9.85e-01 -0.0013 0.0705 0.638 NK_CD56dim L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.65e-01 0.104 0.0748 0.638 NK_CD56dim L2
ENSG00000162517 PEF1 -981857 sc-eQTL 5.73e-01 -0.0377 0.0668 0.638 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 7.15e-01 0.0344 0.0941 0.638 NK_CD56dim L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 4.85e-02 0.153 0.0769 0.638 NK_CD56dim L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 3.54e-01 -0.0918 0.0987 0.639 NK_HLA L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 6.96e-01 -0.0346 0.0883 0.639 NK_HLA L2
ENSG00000134644 PUM1 -402952 sc-eQTL 6.46e-01 -0.0396 0.086 0.639 NK_HLA L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.13e-01 0.13 0.0816 0.639 NK_HLA L2
ENSG00000162517 PEF1 -981857 sc-eQTL 2.07e-01 -0.117 0.0922 0.639 NK_HLA L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 5.61e-01 0.0509 0.0873 0.639 NK_HLA L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 7.38e-01 0.0283 0.0845 0.639 NK_HLA L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 2.67e-01 0.101 0.0905 0.638 NK_cytokine L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.88e-01 -0.019 0.0708 0.638 NK_cytokine L2
ENSG00000134644 PUM1 -402952 sc-eQTL 5.24e-01 -0.0488 0.0765 0.638 NK_cytokine L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 3.92e-02 0.173 0.0835 0.638 NK_cytokine L2
ENSG00000162517 PEF1 -981857 sc-eQTL 4.19e-01 0.058 0.0717 0.638 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 8.27e-01 0.0195 0.0893 0.638 NK_cytokine L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.82e-01 -0.0341 0.0831 0.638 NK_cytokine L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 1.55e-01 0.148 0.103 0.637 PB L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 3.30e-01 -0.118 0.12 0.637 PB L2
ENSG00000134644 PUM1 -402952 sc-eQTL 7.69e-01 -0.0309 0.105 0.637 PB L2
ENSG00000162510 MATN1 -60546 sc-eQTL 2.66e-01 0.109 0.0972 0.637 PB L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.63e-01 0.0971 0.0692 0.637 PB L2
ENSG00000162517 PEF1 -981857 sc-eQTL 5.31e-01 0.0675 0.107 0.637 PB L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 9.39e-01 -0.00736 0.0956 0.637 PB L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 5.94e-01 -0.0544 0.102 0.637 PB L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 9.24e-01 0.00682 0.0711 0.639 Pro_T L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 9.18e-01 -0.00927 0.0903 0.639 Pro_T L2
ENSG00000134644 PUM1 -402952 sc-eQTL 7.30e-01 -0.0291 0.0842 0.639 Pro_T L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 8.84e-01 -0.00883 0.0604 0.639 Pro_T L2
ENSG00000162517 PEF1 -981857 sc-eQTL 2.56e-01 0.101 0.0884 0.639 Pro_T L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 2.28e-01 -0.102 0.0841 0.639 Pro_T L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 1.18e-01 -0.121 0.0772 0.639 Pro_T L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 4.16e-01 -0.0741 0.0909 0.639 Treg L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 3.30e-01 0.0858 0.0878 0.639 Treg L2
ENSG00000134644 PUM1 -402952 sc-eQTL 7.78e-01 0.0199 0.0704 0.639 Treg L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 3.29e-01 0.0787 0.0805 0.639 Treg L2
ENSG00000162517 PEF1 -981857 sc-eQTL 9.64e-01 0.00398 0.0871 0.639 Treg L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 8.94e-01 -0.0109 0.0822 0.639 Treg L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 3.02e-02 0.177 0.0812 0.639 Treg L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 4.57e-01 0.0731 0.0981 0.651 cDC L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 6.85e-01 0.0431 0.106 0.651 cDC L2
ENSG00000134644 PUM1 -402952 sc-eQTL 1.26e-01 -0.139 0.0908 0.651 cDC L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 6.19e-02 0.119 0.0634 0.651 cDC L2
ENSG00000162517 PEF1 -981857 sc-eQTL 6.92e-02 0.168 0.0919 0.651 cDC L2
ENSG00000168528 SERINC2 -746526 sc-eQTL 2.54e-01 0.0937 0.0819 0.651 cDC L2
ENSG00000284543 LINC01226 -843187 sc-eQTL 8.48e-01 -0.0155 0.0808 0.651 cDC L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 6.33e-01 0.0416 0.0869 0.651 cDC L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 2.40e-01 0.0881 0.0747 0.639 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.25e-01 0.0295 0.0836 0.639 cMono_IL1B L2
ENSG00000134644 PUM1 -402952 sc-eQTL 1.22e-01 0.0874 0.0563 0.639 cMono_IL1B L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 8.03e-01 -0.0124 0.0497 0.639 cMono_IL1B L2
ENSG00000162512 SDC3 -245719 sc-eQTL 7.96e-01 0.0242 0.0935 0.639 cMono_IL1B L2
ENSG00000162517 PEF1 -981857 sc-eQTL 3.71e-01 0.0683 0.0763 0.639 cMono_IL1B L2
ENSG00000168528 SERINC2 -746526 sc-eQTL 9.45e-01 0.00656 0.0947 0.639 cMono_IL1B L2
ENSG00000284543 LINC01226 -843187 sc-eQTL 7.87e-01 -0.0226 0.0837 0.639 cMono_IL1B L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 3.37e-01 -0.0751 0.0779 0.639 cMono_IL1B L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 7.98e-01 0.0202 0.079 0.639 cMono_S100A L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.74e-01 0.0268 0.0934 0.639 cMono_S100A L2
ENSG00000134644 PUM1 -402952 sc-eQTL 6.71e-01 -0.0287 0.0675 0.639 cMono_S100A L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 6.33e-01 0.0248 0.0518 0.639 cMono_S100A L2
ENSG00000162512 SDC3 -245719 sc-eQTL 3.40e-01 -0.0854 0.0894 0.639 cMono_S100A L2
ENSG00000162517 PEF1 -981857 sc-eQTL 2.22e-01 -0.0988 0.0806 0.639 cMono_S100A L2
ENSG00000168528 SERINC2 -746526 sc-eQTL 8.42e-01 -0.0189 0.0949 0.639 cMono_S100A L2
ENSG00000284543 LINC01226 -843187 sc-eQTL 8.41e-01 -0.0155 0.0771 0.639 cMono_S100A L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 2.38e-01 -0.0913 0.0771 0.639 cMono_S100A L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 3.52e-01 0.109 0.116 0.658 gdT L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 4.71e-02 0.198 0.0988 0.658 gdT L2
ENSG00000134644 PUM1 -402952 sc-eQTL 4.98e-01 0.07 0.103 0.658 gdT L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.32e-01 -0.169 0.111 0.658 gdT L2
ENSG00000162517 PEF1 -981857 sc-eQTL 8.86e-01 0.0147 0.103 0.658 gdT L2
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 5.97e-01 -0.0548 0.103 0.658 gdT L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 7.73e-01 -0.029 0.1 0.658 gdT L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 7.16e-01 0.0322 0.0883 0.638 intMono L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 3.80e-01 0.0834 0.0948 0.638 intMono L2
ENSG00000134644 PUM1 -402952 sc-eQTL 1.45e-01 -0.117 0.0801 0.638 intMono L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 8.74e-01 0.01 0.0632 0.638 intMono L2
ENSG00000162512 SDC3 -245719 sc-eQTL 2.59e-01 -0.0976 0.0863 0.638 intMono L2
ENSG00000162517 PEF1 -981857 sc-eQTL 2.95e-01 0.0952 0.0907 0.638 intMono L2
ENSG00000168528 SERINC2 -746526 sc-eQTL 6.50e-01 0.0412 0.0905 0.638 intMono L2
ENSG00000284543 LINC01226 -843187 sc-eQTL 7.05e-01 -0.0325 0.0858 0.638 intMono L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 7.75e-01 0.0246 0.0859 0.638 intMono L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 9.84e-01 -0.00164 0.0834 0.643 ncMono L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 9.95e-01 -0.000537 0.089 0.643 ncMono L2
ENSG00000134644 PUM1 -402952 sc-eQTL 5.56e-01 0.0429 0.0726 0.643 ncMono L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 3.69e-01 0.0594 0.0659 0.643 ncMono L2
ENSG00000162512 SDC3 -245719 sc-eQTL 2.81e-01 -0.0797 0.0738 0.643 ncMono L2
ENSG00000162517 PEF1 -981857 sc-eQTL 6.34e-01 0.0405 0.0848 0.643 ncMono L2
ENSG00000168528 SERINC2 -746526 sc-eQTL 8.37e-01 -0.0166 0.0808 0.643 ncMono L2
ENSG00000284543 LINC01226 -843187 sc-eQTL 1.88e-01 0.106 0.0804 0.643 ncMono L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 5.45e-01 0.0507 0.0836 0.643 ncMono L2
ENSG00000060688 SNRNP40 -633749 sc-eQTL 5.51e-02 -0.182 0.0942 0.653 pDC L2
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.39e-01 -0.0349 0.105 0.653 pDC L2
ENSG00000134644 PUM1 -402952 sc-eQTL 8.86e-01 -0.0124 0.0867 0.653 pDC L2
ENSG00000162511 LAPTM5 -94735 sc-eQTL 4.90e-01 -0.0557 0.0805 0.653 pDC L2
ENSG00000162517 PEF1 -981857 sc-eQTL 6.77e-01 0.0436 0.105 0.653 pDC L2
ENSG00000168528 SERINC2 -746526 sc-eQTL 3.66e-01 -0.0884 0.0975 0.653 pDC L2
ENSG00000284543 LINC01226 -843187 sc-eQTL 1.11e-01 -0.121 0.0753 0.653 pDC L2
ENSG00000287510 AL137857.1 -68654 sc-eQTL 5.89e-01 -0.0483 0.0892 0.653 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -633749 sc-eQTL 6.82e-01 -0.038 0.0926 0.639 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 8.79e-01 -0.0118 0.0771 0.639 B_Memory LOneK1K
ENSG00000134644 PUM1 -402952 sc-eQTL 6.30e-01 -0.0329 0.0683 0.639 B_Memory LOneK1K
ENSG00000162510 MATN1 -60546 sc-eQTL 8.28e-01 -0.0169 0.0779 0.639 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -94735 sc-eQTL 1.55e-01 0.0695 0.0487 0.639 B_Memory LOneK1K
ENSG00000162517 PEF1 -981857 sc-eQTL 7.34e-01 -0.0275 0.0811 0.639 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 4.93e-01 0.0444 0.0647 0.639 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -68654 sc-eQTL 5.83e-01 0.0388 0.0705 0.639 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -633749 sc-eQTL 3.95e-02 0.17 0.0821 0.639 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 7.83e-01 -0.0181 0.0655 0.639 B_Naive LOneK1K
ENSG00000134644 PUM1 -402952 sc-eQTL 3.04e-01 -0.0637 0.0618 0.639 B_Naive LOneK1K
ENSG00000162510 MATN1 -60546 sc-eQTL 5.84e-01 -0.0327 0.0597 0.639 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -94735 sc-eQTL 2.45e-01 0.0488 0.0419 0.639 B_Naive LOneK1K
ENSG00000162517 PEF1 -981857 sc-eQTL 8.32e-01 -0.0163 0.0767 0.639 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 4.79e-01 0.0385 0.0542 0.639 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -68654 sc-eQTL 2.67e-02 0.142 0.0637 0.639 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -633749 sc-eQTL 6.98e-01 0.0277 0.0713 0.639 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 8.13e-01 0.0191 0.0808 0.639 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -402952 sc-eQTL 3.10e-01 0.0523 0.0514 0.639 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -94735 sc-eQTL 5.61e-01 0.0264 0.0453 0.639 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -245719 sc-eQTL 7.97e-01 -0.0238 0.0924 0.639 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -981857 sc-eQTL 6.07e-01 -0.0335 0.065 0.639 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -746526 sc-eQTL 7.83e-01 -0.0262 0.0951 0.639 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -843187 sc-eQTL 9.23e-01 -0.00759 0.078 0.639 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -68654 sc-eQTL 4.03e-01 -0.0611 0.0729 0.639 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -633749 sc-eQTL 4.06e-01 0.0655 0.0786 0.636 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 8.59e-01 -0.0153 0.0861 0.636 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -402952 sc-eQTL 3.83e-01 -0.0616 0.0704 0.636 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -94735 sc-eQTL 9.35e-01 0.00463 0.0565 0.636 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -245719 sc-eQTL 2.85e-01 -0.0881 0.0822 0.636 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -981857 sc-eQTL 7.07e-01 0.0282 0.0749 0.636 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -746526 sc-eQTL 9.63e-01 0.00399 0.0855 0.636 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -843187 sc-eQTL 8.89e-01 0.0114 0.0812 0.636 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -68654 sc-eQTL 7.44e-01 0.0266 0.0812 0.636 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -633749 sc-eQTL 1.82e-01 0.118 0.0878 0.638 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -633943 sc-eQTL 8.30e-02 -0.104 0.0598 0.638 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -402952 sc-eQTL 7.01e-01 -0.0253 0.0659 0.638 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -94735 sc-eQTL 6.92e-02 0.134 0.0731 0.638 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -981857 sc-eQTL 8.80e-01 0.00849 0.056 0.638 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -55465 sc-eQTL 4.54e-01 0.0637 0.0849 0.638 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -68654 sc-eQTL 5.56e-01 0.0432 0.0733 0.638 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162511 LAPTM5 -94735 eQTL 0.00216 -0.0324 0.0105 0.00143 0.0 0.343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -94735 3.69e-05 1.3e-05 1.98e-06 1.03e-05 2.55e-06 6.85e-06 1.76e-05 2.27e-06 1.15e-05 5.3e-06 1.58e-05 6.94e-06 1.93e-05 4.02e-06 3.96e-06 6.93e-06 5.55e-06 1.75e-05 3.37e-06 3.23e-06 6.77e-06 1.26e-05 1.47e-05 3.52e-06 2.28e-05 4.6e-06 6.59e-06 5.28e-06 1.19e-05 1.1e-05 7.01e-06 9.82e-07 1.1e-06 3.69e-06 5.59e-06 2.86e-06 1.73e-06 2.2e-06 2.15e-06 1.74e-06 9.41e-07 1.54e-05 4.1e-06 2.22e-07 9.54e-07 2.35e-06 1.76e-06 6.99e-07 4.28e-07