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Genes within 1Mb (chr1:30646898:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -649890 sc-eQTL 8.75e-01 0.0122 0.077 0.382 B L1
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 4.61e-01 -0.0455 0.0616 0.382 B L1
ENSG00000134644 PUM1 -419093 sc-eQTL 5.09e-01 -0.0342 0.0517 0.382 B L1
ENSG00000162510 MATN1 -76687 sc-eQTL 3.08e-02 -0.117 0.0538 0.382 B L1
ENSG00000162511 LAPTM5 -110876 sc-eQTL 4.39e-01 0.033 0.0425 0.382 B L1
ENSG00000162517 PEF1 -997998 sc-eQTL 4.78e-01 0.0457 0.0642 0.382 B L1
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 8.34e-01 -0.0104 0.0499 0.382 B L1
ENSG00000287510 AL137857.1 -84795 sc-eQTL 2.89e-01 0.0626 0.0589 0.382 B L1
ENSG00000060688 SNRNP40 -649890 sc-eQTL 6.14e-01 0.0338 0.067 0.382 CD4T L1
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 7.02e-01 0.0201 0.0524 0.382 CD4T L1
ENSG00000134644 PUM1 -419093 sc-eQTL 5.02e-01 -0.0313 0.0466 0.382 CD4T L1
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.69e-01 0.0571 0.0515 0.382 CD4T L1
ENSG00000162517 PEF1 -997998 sc-eQTL 5.87e-01 0.0293 0.054 0.382 CD4T L1
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 3.22e-01 -0.0458 0.0461 0.382 CD4T L1
ENSG00000287510 AL137857.1 -84795 sc-eQTL 4.70e-01 0.04 0.0553 0.382 CD4T L1
ENSG00000060688 SNRNP40 -649890 sc-eQTL 6.32e-01 0.0428 0.0894 0.382 CD8T L1
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 4.57e-02 -0.118 0.059 0.382 CD8T L1
ENSG00000134644 PUM1 -419093 sc-eQTL 5.57e-01 0.0308 0.0524 0.382 CD8T L1
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.96e-01 0.0532 0.0508 0.382 CD8T L1
ENSG00000162517 PEF1 -997998 sc-eQTL 7.05e-01 -0.0237 0.0627 0.382 CD8T L1
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 2.31e-01 -0.0714 0.0594 0.382 CD8T L1
ENSG00000287510 AL137857.1 -84795 sc-eQTL 9.91e-01 -0.000874 0.075 0.382 CD8T L1
ENSG00000060688 SNRNP40 -649890 sc-eQTL 8.03e-01 -0.0199 0.0797 0.378 DC L1
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 1.54e-01 -0.134 0.0938 0.378 DC L1
ENSG00000134644 PUM1 -419093 sc-eQTL 1.83e-01 -0.0983 0.0736 0.378 DC L1
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.47e-01 0.0611 0.0526 0.378 DC L1
ENSG00000162517 PEF1 -997998 sc-eQTL 9.12e-01 0.00948 0.0855 0.378 DC L1
ENSG00000168528 SERINC2 -762667 sc-eQTL 8.53e-01 0.0162 0.087 0.378 DC L1
ENSG00000284543 LINC01226 -859328 sc-eQTL 4.45e-01 0.0441 0.0576 0.378 DC L1
ENSG00000287510 AL137857.1 -84795 sc-eQTL 6.66e-01 -0.036 0.0834 0.378 DC L1
ENSG00000060688 SNRNP40 -649890 sc-eQTL 7.17e-01 0.0222 0.0612 0.382 Mono L1
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 6.77e-01 -0.0317 0.0758 0.382 Mono L1
ENSG00000134644 PUM1 -419093 sc-eQTL 5.29e-01 -0.0306 0.0486 0.382 Mono L1
ENSG00000162511 LAPTM5 -110876 sc-eQTL 6.82e-01 0.0183 0.0447 0.382 Mono L1
ENSG00000162512 SDC3 -261860 sc-eQTL 2.23e-01 -0.105 0.0856 0.382 Mono L1
ENSG00000162517 PEF1 -997998 sc-eQTL 9.45e-02 -0.101 0.0599 0.382 Mono L1
ENSG00000168528 SERINC2 -762667 sc-eQTL 5.70e-01 0.0525 0.0922 0.382 Mono L1
ENSG00000284543 LINC01226 -859328 sc-eQTL 5.65e-01 0.0467 0.0812 0.382 Mono L1
ENSG00000287510 AL137857.1 -84795 sc-eQTL 9.31e-01 0.00613 0.071 0.382 Mono L1
ENSG00000060688 SNRNP40 -649890 sc-eQTL 4.68e-02 0.171 0.0855 0.38 NK L1
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 5.81e-02 -0.112 0.0586 0.38 NK L1
ENSG00000134644 PUM1 -419093 sc-eQTL 2.07e-01 -0.0781 0.0617 0.38 NK L1
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.62e-02 0.158 0.0705 0.38 NK L1
ENSG00000162517 PEF1 -997998 sc-eQTL 6.10e-01 -0.0266 0.052 0.38 NK L1
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 8.18e-01 0.0184 0.0801 0.38 NK L1
ENSG00000287510 AL137857.1 -84795 sc-eQTL 1.07e-01 0.119 0.0735 0.38 NK L1
ENSG00000060688 SNRNP40 -649890 sc-eQTL 1.36e-01 0.0952 0.0636 0.382 Other_T L1
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 5.04e-02 -0.133 0.0677 0.382 Other_T L1
ENSG00000134644 PUM1 -419093 sc-eQTL 4.60e-01 0.0454 0.0614 0.382 Other_T L1
ENSG00000162511 LAPTM5 -110876 sc-eQTL 1.94e-02 0.117 0.0497 0.382 Other_T L1
ENSG00000162517 PEF1 -997998 sc-eQTL 8.95e-01 0.00892 0.0673 0.382 Other_T L1
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 4.91e-01 0.0568 0.0824 0.382 Other_T L1
ENSG00000287510 AL137857.1 -84795 sc-eQTL 8.98e-01 -0.0111 0.0859 0.382 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -649890 sc-eQTL 6.36e-01 -0.0475 0.1 0.388 B_Activated L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.54e-01 -0.00581 0.101 0.388 B_Activated L2
ENSG00000134644 PUM1 -419093 sc-eQTL 8.84e-01 -0.0137 0.0938 0.388 B_Activated L2
ENSG00000162510 MATN1 -76687 sc-eQTL 1.91e-01 -0.107 0.0816 0.388 B_Activated L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 7.52e-01 0.0181 0.0572 0.388 B_Activated L2
ENSG00000162517 PEF1 -997998 sc-eQTL 3.88e-01 0.0841 0.0971 0.388 B_Activated L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 4.81e-01 0.0651 0.0922 0.388 B_Activated L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 3.82e-01 0.0714 0.0815 0.388 B_Activated L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 9.02e-01 -0.0117 0.0948 0.382 B_Intermediate L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 5.05e-01 -0.0527 0.0789 0.382 B_Intermediate L2
ENSG00000134644 PUM1 -419093 sc-eQTL 3.40e-01 -0.0711 0.0744 0.382 B_Intermediate L2
ENSG00000162510 MATN1 -76687 sc-eQTL 9.51e-01 0.00476 0.0776 0.382 B_Intermediate L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.96e-01 0.0498 0.0475 0.382 B_Intermediate L2
ENSG00000162517 PEF1 -997998 sc-eQTL 6.69e-01 -0.0378 0.0884 0.382 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 4.36e-01 -0.052 0.0667 0.382 B_Intermediate L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 7.89e-01 0.02 0.0748 0.382 B_Intermediate L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 8.37e-01 -0.0195 0.0947 0.381 B_Memory L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 2.43e-01 0.102 0.0869 0.381 B_Memory L2
ENSG00000134644 PUM1 -419093 sc-eQTL 2.09e-01 0.0954 0.0756 0.381 B_Memory L2
ENSG00000162510 MATN1 -76687 sc-eQTL 6.20e-01 0.036 0.0726 0.381 B_Memory L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.38e-01 0.076 0.0642 0.381 B_Memory L2
ENSG00000162517 PEF1 -997998 sc-eQTL 4.02e-01 -0.0721 0.0858 0.381 B_Memory L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 9.22e-01 -0.00718 0.0737 0.381 B_Memory L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 8.02e-01 0.0216 0.0863 0.381 B_Memory L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 6.50e-02 0.155 0.0837 0.382 B_Naive1 L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.03e-01 -0.00892 0.0729 0.382 B_Naive1 L2
ENSG00000134644 PUM1 -419093 sc-eQTL 5.99e-01 0.0339 0.0642 0.382 B_Naive1 L2
ENSG00000162510 MATN1 -76687 sc-eQTL 1.40e-01 -0.0961 0.0649 0.382 B_Naive1 L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 4.72e-01 0.0313 0.0435 0.382 B_Naive1 L2
ENSG00000162517 PEF1 -997998 sc-eQTL 1.61e-01 0.108 0.0765 0.382 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 2.03e-01 -0.0728 0.057 0.382 B_Naive1 L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 9.33e-01 0.00597 0.0707 0.382 B_Naive1 L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 4.15e-01 -0.073 0.0893 0.382 B_Naive2 L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 2.90e-02 -0.161 0.073 0.382 B_Naive2 L2
ENSG00000134644 PUM1 -419093 sc-eQTL 1.33e-02 -0.178 0.0712 0.382 B_Naive2 L2
ENSG00000162510 MATN1 -76687 sc-eQTL 3.66e-02 -0.144 0.0687 0.382 B_Naive2 L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 7.25e-02 0.0844 0.0468 0.382 B_Naive2 L2
ENSG00000162517 PEF1 -997998 sc-eQTL 7.12e-01 0.0317 0.0857 0.382 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 8.38e-01 0.0141 0.0686 0.382 B_Naive2 L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 2.32e-01 0.0886 0.0739 0.382 B_Naive2 L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 5.28e-01 -0.0574 0.0909 0.386 CD4_CTL L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 4.71e-01 -0.0645 0.0893 0.386 CD4_CTL L2
ENSG00000134644 PUM1 -419093 sc-eQTL 2.14e-01 0.109 0.0874 0.386 CD4_CTL L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 5.81e-01 0.0432 0.0781 0.386 CD4_CTL L2
ENSG00000162517 PEF1 -997998 sc-eQTL 5.41e-01 -0.0491 0.0801 0.386 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 4.80e-01 0.0604 0.0854 0.386 CD4_CTL L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 2.42e-01 0.0883 0.0752 0.386 CD4_CTL L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 5.34e-01 0.0436 0.0701 0.382 CD4_Naive L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.25e-01 -0.0059 0.0622 0.382 CD4_Naive L2
ENSG00000134644 PUM1 -419093 sc-eQTL 3.71e-01 -0.0444 0.0496 0.382 CD4_Naive L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 6.68e-01 0.0229 0.0532 0.382 CD4_Naive L2
ENSG00000162517 PEF1 -997998 sc-eQTL 5.43e-01 0.0355 0.0583 0.382 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 3.16e-01 -0.0542 0.0539 0.382 CD4_Naive L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 3.28e-01 0.0607 0.0619 0.382 CD4_Naive L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 2.24e-01 0.107 0.0879 0.382 CD4_TCM L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 3.22e-01 -0.0704 0.0709 0.382 CD4_TCM L2
ENSG00000134644 PUM1 -419093 sc-eQTL 3.59e-01 0.0577 0.0628 0.382 CD4_TCM L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 5.14e-01 0.0341 0.0522 0.382 CD4_TCM L2
ENSG00000162517 PEF1 -997998 sc-eQTL 6.94e-01 0.0275 0.0699 0.382 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 3.25e-01 -0.0652 0.0661 0.382 CD4_TCM L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 3.76e-01 -0.0654 0.0736 0.382 CD4_TCM L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 9.28e-01 -0.00808 0.0889 0.382 CD4_TEM L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 1.33e-01 0.127 0.0843 0.382 CD4_TEM L2
ENSG00000134644 PUM1 -419093 sc-eQTL 4.90e-01 -0.0487 0.0705 0.382 CD4_TEM L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 3.34e-02 0.151 0.0706 0.382 CD4_TEM L2
ENSG00000162517 PEF1 -997998 sc-eQTL 9.24e-01 -0.00767 0.08 0.382 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 8.94e-01 -0.0112 0.0835 0.382 CD4_TEM L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 4.52e-01 -0.062 0.0822 0.382 CD4_TEM L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 8.31e-01 -0.0209 0.0974 0.382 CD8_CTL L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 2.53e-01 -0.0853 0.0745 0.382 CD8_CTL L2
ENSG00000134644 PUM1 -419093 sc-eQTL 3.24e-01 0.0716 0.0724 0.382 CD8_CTL L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 1.41e-01 0.118 0.0799 0.382 CD8_CTL L2
ENSG00000162517 PEF1 -997998 sc-eQTL 6.17e-01 0.0351 0.0699 0.382 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 2.67e-01 -0.0938 0.0842 0.382 CD8_CTL L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 3.95e-01 -0.0675 0.0793 0.382 CD8_CTL L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 9.42e-01 -0.00633 0.0876 0.382 CD8_Naive L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 1.12e-02 -0.19 0.0744 0.382 CD8_Naive L2
ENSG00000134644 PUM1 -419093 sc-eQTL 9.59e-01 -0.00311 0.0608 0.382 CD8_Naive L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 1.82e-01 0.0776 0.058 0.382 CD8_Naive L2
ENSG00000162517 PEF1 -997998 sc-eQTL 8.50e-01 -0.0153 0.081 0.382 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 5.94e-01 0.0388 0.0727 0.382 CD8_Naive L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 7.07e-01 -0.0298 0.0792 0.382 CD8_Naive L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 6.01e-01 0.0524 0.1 0.382 CD8_TCM L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 3.81e-01 0.0805 0.0917 0.382 CD8_TCM L2
ENSG00000134644 PUM1 -419093 sc-eQTL 3.06e-01 0.0885 0.0862 0.382 CD8_TCM L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 6.44e-01 0.0419 0.0904 0.382 CD8_TCM L2
ENSG00000162517 PEF1 -997998 sc-eQTL 3.67e-01 -0.0834 0.0922 0.382 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 1.02e-01 -0.137 0.0831 0.382 CD8_TCM L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 7.91e-01 0.0225 0.0846 0.382 CD8_TCM L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 9.81e-02 0.153 0.0921 0.374 CD8_TEM L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 7.06e-01 -0.0335 0.0889 0.374 CD8_TEM L2
ENSG00000134644 PUM1 -419093 sc-eQTL 7.89e-01 -0.0243 0.0909 0.374 CD8_TEM L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 1.84e-01 0.113 0.0851 0.374 CD8_TEM L2
ENSG00000162517 PEF1 -997998 sc-eQTL 4.88e-01 -0.0558 0.0804 0.374 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 8.03e-01 0.0222 0.0887 0.374 CD8_TEM L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 8.21e-01 -0.0182 0.0803 0.374 CD8_TEM L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 2.68e-01 0.104 0.0939 0.385 MAIT L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.79e-01 -0.00223 0.0835 0.385 MAIT L2
ENSG00000134644 PUM1 -419093 sc-eQTL 9.72e-01 0.00282 0.08 0.385 MAIT L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 5.96e-03 0.206 0.0741 0.385 MAIT L2
ENSG00000162517 PEF1 -997998 sc-eQTL 2.52e-01 -0.0949 0.0827 0.385 MAIT L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 7.41e-01 0.0278 0.084 0.385 MAIT L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 1.42e-01 -0.127 0.0862 0.385 MAIT L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 9.73e-02 0.159 0.0954 0.382 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 4.80e-01 -0.0573 0.081 0.382 NK_CD56bright L2
ENSG00000134644 PUM1 -419093 sc-eQTL 2.64e-01 0.0951 0.0849 0.382 NK_CD56bright L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 1.39e-01 0.124 0.0836 0.382 NK_CD56bright L2
ENSG00000162517 PEF1 -997998 sc-eQTL 4.99e-01 -0.0552 0.0815 0.382 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 8.31e-01 -0.0181 0.0844 0.382 NK_CD56bright L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 6.42e-01 -0.0387 0.0832 0.382 NK_CD56bright L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 8.03e-01 0.0227 0.0909 0.381 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 1.90e-01 -0.088 0.0669 0.381 NK_CD56dim L2
ENSG00000134644 PUM1 -419093 sc-eQTL 8.43e-02 -0.119 0.0685 0.381 NK_CD56dim L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 8.10e-02 0.128 0.073 0.381 NK_CD56dim L2
ENSG00000162517 PEF1 -997998 sc-eQTL 7.92e-01 -0.0172 0.0654 0.381 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 6.96e-01 -0.036 0.0921 0.381 NK_CD56dim L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 9.54e-02 0.126 0.0755 0.381 NK_CD56dim L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 1.59e-01 0.137 0.0965 0.381 NK_HLA L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 6.16e-01 -0.0435 0.0866 0.381 NK_HLA L2
ENSG00000134644 PUM1 -419093 sc-eQTL 4.47e-01 -0.0643 0.0843 0.381 NK_HLA L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 3.30e-01 0.0785 0.0804 0.381 NK_HLA L2
ENSG00000162517 PEF1 -997998 sc-eQTL 1.89e-01 -0.119 0.0904 0.381 NK_HLA L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 5.46e-01 0.0518 0.0856 0.381 NK_HLA L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 1.04e-01 0.134 0.0823 0.381 NK_HLA L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 6.07e-01 0.0457 0.0887 0.381 NK_cytokine L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 4.76e-01 -0.0494 0.0692 0.381 NK_cytokine L2
ENSG00000134644 PUM1 -419093 sc-eQTL 4.78e-01 -0.0531 0.0748 0.381 NK_cytokine L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.94e-02 0.179 0.0815 0.381 NK_cytokine L2
ENSG00000162517 PEF1 -997998 sc-eQTL 8.48e-01 -0.0135 0.0702 0.381 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 5.55e-01 0.0516 0.0873 0.381 NK_cytokine L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 9.24e-01 -0.0078 0.0813 0.381 NK_cytokine L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 1.39e-01 0.152 0.102 0.393 PB L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 4.17e-01 -0.097 0.119 0.393 PB L2
ENSG00000134644 PUM1 -419093 sc-eQTL 2.74e-02 -0.227 0.101 0.393 PB L2
ENSG00000162510 MATN1 -76687 sc-eQTL 6.74e-01 0.0407 0.0965 0.393 PB L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 9.40e-01 -0.0052 0.069 0.393 PB L2
ENSG00000162517 PEF1 -997998 sc-eQTL 6.49e-01 0.0484 0.106 0.393 PB L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 7.04e-01 -0.0359 0.0944 0.393 PB L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 8.68e-01 -0.0167 0.101 0.393 PB L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 7.55e-01 -0.022 0.0705 0.38 Pro_T L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 5.30e-01 -0.0562 0.0894 0.38 Pro_T L2
ENSG00000134644 PUM1 -419093 sc-eQTL 7.11e-01 0.031 0.0834 0.38 Pro_T L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 4.77e-01 -0.0426 0.0598 0.38 Pro_T L2
ENSG00000162517 PEF1 -997998 sc-eQTL 3.42e-01 0.0835 0.0876 0.38 Pro_T L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 2.22e-01 -0.102 0.0834 0.38 Pro_T L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 1.66e-01 -0.106 0.0766 0.38 Pro_T L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 1.88e-01 -0.12 0.0905 0.382 Treg L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.64e-02 0.146 0.0873 0.382 Treg L2
ENSG00000134644 PUM1 -419093 sc-eQTL 6.35e-01 -0.0334 0.0703 0.382 Treg L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 4.69e-02 0.159 0.0798 0.382 Treg L2
ENSG00000162517 PEF1 -997998 sc-eQTL 4.62e-01 -0.064 0.0869 0.382 Treg L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 7.16e-01 0.0299 0.082 0.382 Treg L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 6.82e-01 -0.0336 0.0819 0.382 Treg L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 8.21e-01 -0.0207 0.0914 0.383 cDC L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 2.47e-01 -0.115 0.0986 0.383 cDC L2
ENSG00000134644 PUM1 -419093 sc-eQTL 2.44e-01 -0.099 0.0847 0.383 cDC L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.63e-01 0.0667 0.0594 0.383 cDC L2
ENSG00000162517 PEF1 -997998 sc-eQTL 9.19e-01 0.00879 0.0863 0.383 cDC L2
ENSG00000168528 SERINC2 -762667 sc-eQTL 6.27e-01 -0.0372 0.0765 0.383 cDC L2
ENSG00000284543 LINC01226 -859328 sc-eQTL 7.22e-01 0.0268 0.0751 0.383 cDC L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 7.03e-01 -0.0309 0.0809 0.383 cDC L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 2.64e-01 0.0813 0.0726 0.382 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 8.79e-01 0.0124 0.0813 0.382 cMono_IL1B L2
ENSG00000134644 PUM1 -419093 sc-eQTL 8.62e-01 0.0096 0.055 0.382 cMono_IL1B L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 9.19e-01 -0.00492 0.0483 0.382 cMono_IL1B L2
ENSG00000162512 SDC3 -261860 sc-eQTL 7.00e-01 -0.035 0.0909 0.382 cMono_IL1B L2
ENSG00000162517 PEF1 -997998 sc-eQTL 5.35e-01 -0.0462 0.0742 0.382 cMono_IL1B L2
ENSG00000168528 SERINC2 -762667 sc-eQTL 3.55e-01 0.0852 0.0919 0.382 cMono_IL1B L2
ENSG00000284543 LINC01226 -859328 sc-eQTL 2.88e-01 0.0864 0.0812 0.382 cMono_IL1B L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 5.12e-01 0.0497 0.0758 0.382 cMono_IL1B L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 5.27e-01 0.0481 0.076 0.382 cMono_S100A L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 3.96e-01 -0.0763 0.0897 0.382 cMono_S100A L2
ENSG00000134644 PUM1 -419093 sc-eQTL 7.35e-01 -0.022 0.0649 0.382 cMono_S100A L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 9.19e-01 0.00506 0.0499 0.382 cMono_S100A L2
ENSG00000162512 SDC3 -261860 sc-eQTL 4.74e-01 -0.0618 0.0861 0.382 cMono_S100A L2
ENSG00000162517 PEF1 -997998 sc-eQTL 4.85e-01 -0.0544 0.0778 0.382 cMono_S100A L2
ENSG00000168528 SERINC2 -762667 sc-eQTL 4.22e-01 0.0733 0.0911 0.382 cMono_S100A L2
ENSG00000284543 LINC01226 -859328 sc-eQTL 3.43e-01 -0.0703 0.074 0.382 cMono_S100A L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 1.47e-01 -0.108 0.0741 0.382 cMono_S100A L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 4.00e-01 0.095 0.113 0.385 gdT L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 2.90e-01 0.103 0.0965 0.385 gdT L2
ENSG00000134644 PUM1 -419093 sc-eQTL 7.71e-02 0.176 0.0988 0.385 gdT L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 7.44e-01 -0.0355 0.109 0.385 gdT L2
ENSG00000162517 PEF1 -997998 sc-eQTL 9.65e-01 -0.00438 0.0993 0.385 gdT L2
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 7.36e-01 -0.0338 0.1 0.385 gdT L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 5.03e-01 -0.065 0.0969 0.385 gdT L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 8.69e-01 0.0141 0.0854 0.382 intMono L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 7.07e-01 0.0346 0.0918 0.382 intMono L2
ENSG00000134644 PUM1 -419093 sc-eQTL 7.43e-02 -0.139 0.0773 0.382 intMono L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 3.37e-01 0.0587 0.061 0.382 intMono L2
ENSG00000162512 SDC3 -261860 sc-eQTL 1.07e-01 -0.135 0.0832 0.382 intMono L2
ENSG00000162517 PEF1 -997998 sc-eQTL 1.86e-01 0.116 0.0876 0.382 intMono L2
ENSG00000168528 SERINC2 -762667 sc-eQTL 3.57e-01 0.0808 0.0874 0.382 intMono L2
ENSG00000284543 LINC01226 -859328 sc-eQTL 8.25e-01 0.0183 0.083 0.382 intMono L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 2.83e-01 0.0892 0.0828 0.382 intMono L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 3.70e-01 -0.0724 0.0806 0.38 ncMono L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.34e-01 -0.00712 0.0861 0.38 ncMono L2
ENSG00000134644 PUM1 -419093 sc-eQTL 6.74e-01 0.0296 0.0703 0.38 ncMono L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 9.54e-01 -0.00372 0.0639 0.38 ncMono L2
ENSG00000162512 SDC3 -261860 sc-eQTL 7.33e-01 -0.0245 0.0716 0.38 ncMono L2
ENSG00000162517 PEF1 -997998 sc-eQTL 9.75e-01 -0.00254 0.0822 0.38 ncMono L2
ENSG00000168528 SERINC2 -762667 sc-eQTL 7.37e-01 0.0263 0.0782 0.38 ncMono L2
ENSG00000284543 LINC01226 -859328 sc-eQTL 5.84e-01 0.0428 0.0781 0.38 ncMono L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 5.54e-01 0.048 0.0809 0.38 ncMono L2
ENSG00000060688 SNRNP40 -649890 sc-eQTL 3.73e-01 -0.0804 0.0899 0.39 pDC L2
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 3.74e-01 -0.088 0.0987 0.39 pDC L2
ENSG00000134644 PUM1 -419093 sc-eQTL 4.58e-01 -0.0609 0.0819 0.39 pDC L2
ENSG00000162511 LAPTM5 -110876 sc-eQTL 9.22e-01 -0.00752 0.0763 0.39 pDC L2
ENSG00000162517 PEF1 -997998 sc-eQTL 7.34e-01 0.0337 0.0989 0.39 pDC L2
ENSG00000168528 SERINC2 -762667 sc-eQTL 1.68e-01 0.127 0.0919 0.39 pDC L2
ENSG00000284543 LINC01226 -859328 sc-eQTL 8.46e-01 -0.014 0.0718 0.39 pDC L2
ENSG00000287510 AL137857.1 -84795 sc-eQTL 9.41e-01 -0.00622 0.0845 0.39 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -649890 sc-eQTL 9.11e-01 -0.0101 0.0905 0.382 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.51e-01 0.00466 0.0754 0.382 B_Memory LOneK1K
ENSG00000134644 PUM1 -419093 sc-eQTL 6.51e-01 0.0303 0.0667 0.382 B_Memory LOneK1K
ENSG00000162510 MATN1 -76687 sc-eQTL 4.15e-01 -0.062 0.076 0.382 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.09e-01 0.06 0.0477 0.382 B_Memory LOneK1K
ENSG00000162517 PEF1 -997998 sc-eQTL 1.98e-01 -0.102 0.0789 0.382 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 9.73e-01 0.00218 0.0633 0.382 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -84795 sc-eQTL 2.82e-01 0.0741 0.0688 0.382 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -649890 sc-eQTL 2.72e-01 0.0898 0.0816 0.382 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 1.98e-01 -0.0832 0.0644 0.382 B_Naive LOneK1K
ENSG00000134644 PUM1 -419093 sc-eQTL 5.60e-01 -0.0357 0.0612 0.382 B_Naive LOneK1K
ENSG00000162510 MATN1 -76687 sc-eQTL 3.19e-02 -0.126 0.0583 0.382 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -110876 sc-eQTL 2.41e-01 0.0486 0.0414 0.382 B_Naive LOneK1K
ENSG00000162517 PEF1 -997998 sc-eQTL 1.43e-01 0.111 0.0754 0.382 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 4.12e-01 -0.044 0.0535 0.382 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -84795 sc-eQTL 5.55e-01 0.0376 0.0636 0.382 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -649890 sc-eQTL 5.70e-01 0.0395 0.0693 0.382 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 9.15e-01 -0.00838 0.0786 0.382 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -419093 sc-eQTL 9.25e-01 -0.00474 0.0501 0.382 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -110876 sc-eQTL 7.00e-01 0.017 0.044 0.382 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -261860 sc-eQTL 5.15e-01 -0.0586 0.0898 0.382 CD14_Mono LOneK1K
ENSG00000162517 PEF1 -997998 sc-eQTL 1.39e-01 -0.0933 0.0629 0.382 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -762667 sc-eQTL 4.80e-01 0.0654 0.0923 0.382 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -859328 sc-eQTL 6.08e-01 0.039 0.0758 0.382 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -84795 sc-eQTL 9.45e-01 0.00489 0.071 0.382 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -649890 sc-eQTL 7.71e-01 -0.0223 0.0763 0.379 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 4.86e-01 -0.0582 0.0834 0.379 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -419093 sc-eQTL 2.57e-01 -0.0774 0.0682 0.379 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -110876 sc-eQTL 7.99e-01 0.0139 0.0547 0.379 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -261860 sc-eQTL 6.30e-02 -0.148 0.0792 0.379 CD16_Mono LOneK1K
ENSG00000162517 PEF1 -997998 sc-eQTL 9.67e-01 0.00301 0.0726 0.379 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -762667 sc-eQTL 7.30e-01 0.0287 0.0828 0.379 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -859328 sc-eQTL 8.56e-01 0.0143 0.0786 0.379 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -84795 sc-eQTL 4.13e-01 0.0645 0.0786 0.379 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -649890 sc-eQTL 1.25e-01 0.132 0.0859 0.381 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -650084 sc-eQTL 1.00e-01 -0.0968 0.0586 0.381 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -419093 sc-eQTL 1.74e-01 -0.0878 0.0644 0.381 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -110876 sc-eQTL 4.45e-02 0.145 0.0715 0.381 NK_CD56dim LOneK1K
ENSG00000162517 PEF1 -997998 sc-eQTL 5.64e-01 -0.0317 0.0548 0.381 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -71606 sc-eQTL 7.79e-01 0.0234 0.0833 0.381 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -84795 sc-eQTL 7.20e-02 0.129 0.0714 0.381 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000142910 TINAGL1 -929587 pQTL 0.0398 0.0317 0.0154 0.00101 0.0 0.408
ENSG00000162511 LAPTM5 -110876 eQTL 0.0366 -0.0208 0.00996 0.0 0.0 0.413
ENSG00000162512 SDC3 -261860 eQTL 0.0217 -0.0564 0.0245 0.0 0.0 0.413

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162511 LAPTM5 -110876 4.53e-06 4.94e-06 5.84e-07 2.95e-06 1.67e-06 1.7e-06 5.03e-06 1.11e-06 5.1e-06 2.59e-06 5.38e-06 3.32e-06 7.42e-06 2.33e-06 1.27e-06 3.84e-06 1.84e-06 3.75e-06 1.43e-06 1.44e-06 2.75e-06 4.81e-06 4.49e-06 1.99e-06 6.5e-06 2.1e-06 2.27e-06 1.81e-06 4.42e-06 4.4e-06 2.81e-06 4.59e-07 7.31e-07 2.3e-06 2.05e-06 1.3e-06 1.11e-06 4.72e-07 9.61e-07 6.17e-07 8.2e-07 5.65e-06 3.65e-07 1.6e-07 8.27e-07 1.18e-06 1.14e-06 6.86e-07 5.83e-07