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Genes within 1Mb (chr1:30616076:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -680712 sc-eQTL 4.93e-01 -0.0539 0.0784 0.393 B L1
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 9.19e-01 -0.00642 0.0629 0.393 B L1
ENSG00000134644 PUM1 -449915 sc-eQTL 9.23e-01 -0.00512 0.0528 0.393 B L1
ENSG00000162510 MATN1 -107509 sc-eQTL 8.60e-01 0.00981 0.0555 0.393 B L1
ENSG00000162511 LAPTM5 -141698 sc-eQTL 9.15e-01 -0.00464 0.0434 0.393 B L1
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 7.60e-01 -0.0156 0.0509 0.393 B L1
ENSG00000287510 AL137857.1 -115617 sc-eQTL 4.10e-01 -0.0497 0.0602 0.393 B L1
ENSG00000060688 SNRNP40 -680712 sc-eQTL 8.14e-01 -0.016 0.0682 0.393 CD4T L1
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 6.99e-01 0.0206 0.0533 0.393 CD4T L1
ENSG00000134644 PUM1 -449915 sc-eQTL 6.78e-01 -0.0197 0.0474 0.393 CD4T L1
ENSG00000162511 LAPTM5 -141698 sc-eQTL 2.17e-02 -0.12 0.0519 0.393 CD4T L1
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 8.07e-01 -0.0115 0.047 0.393 CD4T L1
ENSG00000287510 AL137857.1 -115617 sc-eQTL 3.09e-01 -0.0574 0.0562 0.393 CD4T L1
ENSG00000060688 SNRNP40 -680712 sc-eQTL 1.00e+00 -4.39e-05 0.0891 0.393 CD8T L1
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 7.42e-01 -0.0195 0.0593 0.393 CD8T L1
ENSG00000134644 PUM1 -449915 sc-eQTL 2.91e-01 -0.0552 0.0521 0.393 CD8T L1
ENSG00000162511 LAPTM5 -141698 sc-eQTL 2.27e-01 -0.0612 0.0505 0.393 CD8T L1
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 6.13e-02 0.111 0.0589 0.393 CD8T L1
ENSG00000287510 AL137857.1 -115617 sc-eQTL 9.65e-01 -0.00329 0.0747 0.393 CD8T L1
ENSG00000060688 SNRNP40 -680712 sc-eQTL 9.89e-01 0.00112 0.0783 0.392 DC L1
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 6.93e-01 0.0366 0.0926 0.392 DC L1
ENSG00000134644 PUM1 -449915 sc-eQTL 8.54e-01 0.0134 0.0726 0.392 DC L1
ENSG00000162511 LAPTM5 -141698 sc-eQTL 8.47e-02 -0.0891 0.0514 0.392 DC L1
ENSG00000168528 SERINC2 -793489 sc-eQTL 7.80e-02 -0.15 0.0848 0.392 DC L1
ENSG00000284543 LINC01226 -890150 sc-eQTL 6.28e-01 -0.0275 0.0566 0.392 DC L1
ENSG00000287510 AL137857.1 -115617 sc-eQTL 2.67e-02 -0.181 0.081 0.392 DC L1
ENSG00000060688 SNRNP40 -680712 sc-eQTL 4.31e-01 -0.0479 0.0607 0.393 Mono L1
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.67e-01 -0.0127 0.0753 0.393 Mono L1
ENSG00000134644 PUM1 -449915 sc-eQTL 1.25e-01 -0.0741 0.048 0.393 Mono L1
ENSG00000162511 LAPTM5 -141698 sc-eQTL 4.76e-02 -0.0877 0.044 0.393 Mono L1
ENSG00000162512 SDC3 -292682 sc-eQTL 6.60e-01 0.0376 0.0853 0.393 Mono L1
ENSG00000168528 SERINC2 -793489 sc-eQTL 5.90e-02 -0.172 0.0908 0.393 Mono L1
ENSG00000284543 LINC01226 -890150 sc-eQTL 3.79e-01 -0.071 0.0805 0.393 Mono L1
ENSG00000287510 AL137857.1 -115617 sc-eQTL 5.03e-01 0.0472 0.0705 0.393 Mono L1
ENSG00000060688 SNRNP40 -680712 sc-eQTL 4.75e-01 -0.0623 0.0871 0.395 NK L1
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 9.22e-01 -0.00581 0.0597 0.395 NK L1
ENSG00000134644 PUM1 -449915 sc-eQTL 9.30e-01 -0.0055 0.0626 0.395 NK L1
ENSG00000162511 LAPTM5 -141698 sc-eQTL 6.92e-01 -0.0285 0.072 0.395 NK L1
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 7.17e-01 -0.0293 0.0809 0.395 NK L1
ENSG00000287510 AL137857.1 -115617 sc-eQTL 1.70e-01 -0.102 0.0744 0.395 NK L1
ENSG00000060688 SNRNP40 -680712 sc-eQTL 2.18e-01 0.0786 0.0636 0.393 Other_T L1
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 6.76e-01 0.0285 0.0682 0.393 Other_T L1
ENSG00000134644 PUM1 -449915 sc-eQTL 7.96e-01 -0.0158 0.0614 0.393 Other_T L1
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.71e-01 -0.0687 0.0501 0.393 Other_T L1
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 7.95e-01 0.0214 0.0823 0.393 Other_T L1
ENSG00000287510 AL137857.1 -115617 sc-eQTL 8.51e-01 0.0161 0.0858 0.393 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -680712 sc-eQTL 8.15e-01 -0.0242 0.103 0.398 B_Activated L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.19e-01 0.0239 0.104 0.398 B_Activated L2
ENSG00000134644 PUM1 -449915 sc-eQTL 7.26e-01 -0.0341 0.097 0.398 B_Activated L2
ENSG00000162510 MATN1 -107509 sc-eQTL 3.03e-01 -0.0873 0.0845 0.398 B_Activated L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 5.61e-01 0.0344 0.0591 0.398 B_Activated L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 4.37e-01 -0.0742 0.0953 0.398 B_Activated L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 2.45e-01 0.0982 0.0841 0.398 B_Activated L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 8.89e-01 0.0134 0.0958 0.391 B_Intermediate L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 6.16e-01 -0.0401 0.0798 0.391 B_Intermediate L2
ENSG00000134644 PUM1 -449915 sc-eQTL 9.36e-01 -0.00601 0.0753 0.391 B_Intermediate L2
ENSG00000162510 MATN1 -107509 sc-eQTL 2.80e-01 0.0846 0.0782 0.391 B_Intermediate L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.65e-01 -0.0667 0.0479 0.391 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 9.10e-01 -0.00768 0.0675 0.391 B_Intermediate L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 6.61e-02 -0.138 0.075 0.391 B_Intermediate L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 6.81e-01 0.0386 0.0937 0.392 B_Memory L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 5.68e-01 0.0493 0.0862 0.392 B_Memory L2
ENSG00000134644 PUM1 -449915 sc-eQTL 2.41e-01 -0.088 0.0749 0.392 B_Memory L2
ENSG00000162510 MATN1 -107509 sc-eQTL 1.84e-01 -0.0954 0.0716 0.392 B_Memory L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 3.52e-01 -0.0593 0.0636 0.392 B_Memory L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 9.56e-01 -0.00407 0.0729 0.392 B_Memory L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 4.41e-01 0.0659 0.0853 0.392 B_Memory L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 1.92e-01 -0.11 0.0842 0.393 B_Naive1 L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 6.53e-01 0.0329 0.073 0.393 B_Naive1 L2
ENSG00000134644 PUM1 -449915 sc-eQTL 2.83e-01 0.0691 0.0642 0.393 B_Naive1 L2
ENSG00000162510 MATN1 -107509 sc-eQTL 9.78e-01 -0.00179 0.0654 0.393 B_Naive1 L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.89e-01 -0.0573 0.0435 0.393 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 8.91e-01 -0.0079 0.0573 0.393 B_Naive1 L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 5.26e-01 -0.0449 0.0708 0.393 B_Naive1 L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 6.51e-01 0.0412 0.091 0.393 B_Naive2 L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 7.28e-01 0.0262 0.0751 0.393 B_Naive2 L2
ENSG00000134644 PUM1 -449915 sc-eQTL 3.00e-01 -0.0762 0.0733 0.393 B_Naive2 L2
ENSG00000162510 MATN1 -107509 sc-eQTL 3.27e-01 0.0692 0.0704 0.393 B_Naive2 L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 2.92e-01 -0.0505 0.0478 0.393 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 4.46e-01 -0.0532 0.0697 0.393 B_Naive2 L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 3.10e-01 -0.0766 0.0752 0.393 B_Naive2 L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 9.62e-01 0.00426 0.0904 0.391 CD4_CTL L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 7.53e-01 -0.0281 0.0889 0.391 CD4_CTL L2
ENSG00000134644 PUM1 -449915 sc-eQTL 5.35e-02 -0.168 0.0864 0.391 CD4_CTL L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 9.45e-01 -0.00536 0.0778 0.391 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 4.22e-01 0.0684 0.0849 0.391 CD4_CTL L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 2.21e-01 -0.0918 0.0748 0.391 CD4_CTL L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 3.07e-01 -0.0723 0.0706 0.393 CD4_Naive L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.21e-01 -0.0142 0.0627 0.393 CD4_Naive L2
ENSG00000134644 PUM1 -449915 sc-eQTL 9.68e-01 -0.002 0.0501 0.393 CD4_Naive L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 2.02e-02 -0.124 0.053 0.393 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 7.88e-01 0.0146 0.0545 0.393 CD4_Naive L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 6.51e-01 -0.0284 0.0625 0.393 CD4_Naive L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 1.27e-01 0.136 0.089 0.393 CD4_TCM L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 4.56e-02 0.144 0.0714 0.393 CD4_TCM L2
ENSG00000134644 PUM1 -449915 sc-eQTL 8.94e-01 -0.00849 0.0638 0.393 CD4_TCM L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.73e-02 -0.125 0.0523 0.393 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 1.70e-01 -0.0922 0.0669 0.393 CD4_TCM L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 6.05e-01 -0.0388 0.0748 0.393 CD4_TCM L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 7.38e-01 0.0296 0.0887 0.393 CD4_TEM L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 2.57e-01 -0.0958 0.0843 0.393 CD4_TEM L2
ENSG00000134644 PUM1 -449915 sc-eQTL 6.17e-01 -0.0352 0.0704 0.393 CD4_TEM L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 6.17e-01 -0.0356 0.0712 0.393 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 7.05e-01 -0.0315 0.0833 0.393 CD4_TEM L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 1.60e-01 -0.115 0.0817 0.393 CD4_TEM L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 8.37e-01 0.0198 0.0957 0.393 CD8_CTL L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 5.83e-01 -0.0403 0.0734 0.393 CD8_CTL L2
ENSG00000134644 PUM1 -449915 sc-eQTL 8.81e-01 -0.0107 0.0713 0.393 CD8_CTL L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 3.83e-01 -0.069 0.0788 0.393 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 2.47e-01 0.096 0.0827 0.393 CD8_CTL L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 1.49e-01 0.113 0.0777 0.393 CD8_CTL L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 5.17e-01 -0.0578 0.089 0.393 CD8_Naive L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 5.88e-01 0.0416 0.0768 0.393 CD8_Naive L2
ENSG00000134644 PUM1 -449915 sc-eQTL 5.58e-02 -0.118 0.0613 0.393 CD8_Naive L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.93e-02 -0.138 0.0585 0.393 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 2.00e-01 0.0946 0.0737 0.393 CD8_Naive L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 3.06e-01 -0.0823 0.0803 0.393 CD8_Naive L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 6.16e-01 0.0495 0.0985 0.394 CD8_TCM L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 2.03e-01 0.115 0.09 0.394 CD8_TCM L2
ENSG00000134644 PUM1 -449915 sc-eQTL 1.71e-01 0.116 0.0846 0.394 CD8_TCM L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 8.03e-01 -0.0222 0.0889 0.394 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 2.09e-01 0.103 0.082 0.394 CD8_TCM L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 1.23e-01 0.128 0.0827 0.394 CD8_TCM L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 7.07e-01 0.0351 0.0933 0.39 CD8_TEM L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 4.41e-01 -0.069 0.0894 0.39 CD8_TEM L2
ENSG00000134644 PUM1 -449915 sc-eQTL 4.53e-01 -0.0686 0.0914 0.39 CD8_TEM L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 6.54e-01 0.0386 0.086 0.39 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 4.76e-01 -0.0637 0.0892 0.39 CD8_TEM L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 3.43e-01 0.0766 0.0806 0.39 CD8_TEM L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 1.84e-01 0.125 0.0936 0.39 MAIT L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 3.58e-01 -0.0766 0.0831 0.39 MAIT L2
ENSG00000134644 PUM1 -449915 sc-eQTL 1.94e-01 0.104 0.0795 0.39 MAIT L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 7.19e-02 -0.135 0.0747 0.39 MAIT L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 5.92e-01 0.0449 0.0838 0.39 MAIT L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 5.71e-01 0.049 0.0864 0.39 MAIT L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 3.87e-01 -0.0838 0.0966 0.387 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 7.19e-01 -0.0295 0.0817 0.387 NK_CD56bright L2
ENSG00000134644 PUM1 -449915 sc-eQTL 9.86e-01 0.00152 0.0859 0.387 NK_CD56bright L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 7.50e-01 -0.027 0.0847 0.387 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 2.08e-01 0.107 0.0848 0.387 NK_CD56bright L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 3.81e-01 -0.0735 0.0837 0.387 NK_CD56bright L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 6.05e-01 -0.0477 0.0921 0.394 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 1.90e-01 0.0893 0.0679 0.394 NK_CD56dim L2
ENSG00000134644 PUM1 -449915 sc-eQTL 9.79e-01 0.00185 0.07 0.394 NK_CD56dim L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 9.85e-01 -0.00145 0.0746 0.394 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 6.64e-01 -0.0406 0.0934 0.394 NK_CD56dim L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 1.50e-01 -0.111 0.0767 0.394 NK_CD56dim L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 1.68e-01 0.132 0.0955 0.39 NK_HLA L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 9.57e-01 -0.00466 0.0857 0.39 NK_HLA L2
ENSG00000134644 PUM1 -449915 sc-eQTL 3.00e-01 -0.0865 0.0832 0.39 NK_HLA L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 5.96e-01 -0.0423 0.0796 0.39 NK_HLA L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 9.26e-01 -0.00785 0.0848 0.39 NK_HLA L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 8.56e-01 0.0149 0.0819 0.39 NK_HLA L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 5.64e-01 -0.0512 0.0887 0.394 NK_cytokine L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 2.65e-01 -0.0772 0.0691 0.394 NK_cytokine L2
ENSG00000134644 PUM1 -449915 sc-eQTL 7.93e-01 -0.0197 0.0749 0.394 NK_cytokine L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 5.32e-01 -0.0516 0.0824 0.394 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 9.15e-01 0.00937 0.0874 0.394 NK_cytokine L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 7.60e-01 -0.0249 0.0813 0.394 NK_cytokine L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 3.26e-01 -0.105 0.107 0.374 PB L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 2.01e-01 0.159 0.124 0.374 PB L2
ENSG00000134644 PUM1 -449915 sc-eQTL 7.63e-01 0.0326 0.108 0.374 PB L2
ENSG00000162510 MATN1 -107509 sc-eQTL 7.05e-01 0.0382 0.101 0.374 PB L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 8.68e-01 -0.0119 0.072 0.374 PB L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 6.48e-01 -0.0451 0.0984 0.374 PB L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 7.01e-02 0.189 0.103 0.374 PB L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 9.79e-01 0.00192 0.0718 0.393 Pro_T L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.08e-01 -0.0221 0.0912 0.393 Pro_T L2
ENSG00000134644 PUM1 -449915 sc-eQTL 6.88e-01 0.0342 0.085 0.393 Pro_T L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 6.38e-01 0.0287 0.061 0.393 Pro_T L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 7.26e-01 -0.0299 0.0852 0.393 Pro_T L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 8.47e-01 0.0152 0.0784 0.393 Pro_T L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 8.61e-02 0.157 0.0913 0.393 Treg L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.52e-01 -0.0166 0.0889 0.393 Treg L2
ENSG00000134644 PUM1 -449915 sc-eQTL 5.98e-01 -0.0376 0.0711 0.393 Treg L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 8.45e-02 -0.14 0.0809 0.393 Treg L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 6.08e-01 0.0426 0.083 0.393 Treg L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 7.13e-01 -0.0305 0.0829 0.393 Treg L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 8.74e-01 -0.0147 0.0922 0.385 cDC L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 3.83e-01 -0.0871 0.0997 0.385 cDC L2
ENSG00000134644 PUM1 -449915 sc-eQTL 6.51e-01 -0.0389 0.0857 0.385 cDC L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.24e-01 -0.0923 0.0597 0.385 cDC L2
ENSG00000168528 SERINC2 -793489 sc-eQTL 4.03e-02 -0.158 0.0763 0.385 cDC L2
ENSG00000284543 LINC01226 -890150 sc-eQTL 9.65e-01 -0.00329 0.0759 0.385 cDC L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 2.45e-01 -0.0948 0.0813 0.385 cDC L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 3.39e-01 -0.0702 0.0732 0.393 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.73e-01 -0.0132 0.0819 0.393 cMono_IL1B L2
ENSG00000134644 PUM1 -449915 sc-eQTL 1.41e-01 -0.0815 0.0551 0.393 cMono_IL1B L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 2.28e-01 -0.0586 0.0485 0.393 cMono_IL1B L2
ENSG00000162512 SDC3 -292682 sc-eQTL 3.03e-01 0.0943 0.0914 0.393 cMono_IL1B L2
ENSG00000168528 SERINC2 -793489 sc-eQTL 4.26e-02 -0.187 0.0918 0.393 cMono_IL1B L2
ENSG00000284543 LINC01226 -890150 sc-eQTL 6.26e-01 0.04 0.0819 0.393 cMono_IL1B L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 6.96e-01 0.0299 0.0764 0.393 cMono_IL1B L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 9.04e-01 0.0093 0.0774 0.393 cMono_S100A L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.98e-01 0.0118 0.0915 0.393 cMono_S100A L2
ENSG00000134644 PUM1 -449915 sc-eQTL 6.46e-01 -0.0304 0.0661 0.393 cMono_S100A L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 5.18e-01 -0.0329 0.0508 0.393 cMono_S100A L2
ENSG00000162512 SDC3 -292682 sc-eQTL 5.39e-01 -0.054 0.0877 0.393 cMono_S100A L2
ENSG00000168528 SERINC2 -793489 sc-eQTL 2.05e-02 -0.214 0.0918 0.393 cMono_S100A L2
ENSG00000284543 LINC01226 -890150 sc-eQTL 1.00e-01 -0.124 0.075 0.393 cMono_S100A L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 2.70e-01 0.0837 0.0756 0.393 cMono_S100A L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 5.04e-01 -0.0767 0.114 0.397 gdT L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.89e-01 0.0138 0.0984 0.397 gdT L2
ENSG00000134644 PUM1 -449915 sc-eQTL 6.53e-03 -0.273 0.0988 0.397 gdT L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 6.14e-01 -0.0557 0.11 0.397 gdT L2
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 5.34e-01 -0.0634 0.102 0.397 gdT L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 4.52e-01 0.0742 0.0984 0.397 gdT L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 1.14e-01 -0.138 0.087 0.4 intMono L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 3.64e-01 0.0855 0.094 0.4 intMono L2
ENSG00000134644 PUM1 -449915 sc-eQTL 8.65e-02 0.137 0.0793 0.4 intMono L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 5.49e-01 -0.0375 0.0626 0.4 intMono L2
ENSG00000162512 SDC3 -292682 sc-eQTL 7.41e-01 -0.0284 0.0858 0.4 intMono L2
ENSG00000168528 SERINC2 -793489 sc-eQTL 8.92e-01 -0.0122 0.0898 0.4 intMono L2
ENSG00000284543 LINC01226 -890150 sc-eQTL 5.68e-01 -0.0487 0.085 0.4 intMono L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 6.29e-01 0.0412 0.0851 0.4 intMono L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 6.84e-01 -0.033 0.081 0.389 ncMono L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 6.11e-01 0.044 0.0863 0.389 ncMono L2
ENSG00000134644 PUM1 -449915 sc-eQTL 9.90e-01 -0.000926 0.0706 0.389 ncMono L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.03e-01 -0.104 0.0637 0.389 ncMono L2
ENSG00000162512 SDC3 -292682 sc-eQTL 8.66e-01 0.0121 0.0718 0.389 ncMono L2
ENSG00000168528 SERINC2 -793489 sc-eQTL 9.60e-01 -0.00395 0.0784 0.389 ncMono L2
ENSG00000284543 LINC01226 -890150 sc-eQTL 6.59e-01 -0.0346 0.0783 0.389 ncMono L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 4.96e-01 -0.0553 0.0811 0.389 ncMono L2
ENSG00000060688 SNRNP40 -680712 sc-eQTL 8.36e-01 0.0194 0.0933 0.393 pDC L2
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.81e-01 -0.0153 0.102 0.393 pDC L2
ENSG00000134644 PUM1 -449915 sc-eQTL 1.85e-01 -0.112 0.0844 0.393 pDC L2
ENSG00000162511 LAPTM5 -141698 sc-eQTL 5.18e-01 -0.051 0.0788 0.393 pDC L2
ENSG00000168528 SERINC2 -793489 sc-eQTL 7.47e-01 -0.0309 0.0957 0.393 pDC L2
ENSG00000284543 LINC01226 -890150 sc-eQTL 5.55e-01 0.0439 0.0742 0.393 pDC L2
ENSG00000287510 AL137857.1 -115617 sc-eQTL 8.48e-01 0.0167 0.0874 0.393 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -680712 sc-eQTL 4.72e-01 -0.0657 0.0912 0.393 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.60e-01 -0.0134 0.076 0.393 B_Memory LOneK1K
ENSG00000134644 PUM1 -449915 sc-eQTL 3.31e-01 -0.0655 0.0672 0.393 B_Memory LOneK1K
ENSG00000162510 MATN1 -107509 sc-eQTL 7.73e-01 0.0222 0.0768 0.393 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -141698 sc-eQTL 4.43e-01 -0.037 0.0482 0.393 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 9.73e-01 -0.00213 0.0638 0.393 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -115617 sc-eQTL 2.32e-01 -0.0832 0.0693 0.393 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -680712 sc-eQTL 6.07e-01 -0.0426 0.0827 0.393 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.80e-01 0.00987 0.0654 0.393 B_Naive LOneK1K
ENSG00000134644 PUM1 -449915 sc-eQTL 6.56e-01 -0.0276 0.0619 0.393 B_Naive LOneK1K
ENSG00000162510 MATN1 -107509 sc-eQTL 8.30e-01 0.0128 0.0596 0.393 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.28e-01 -0.0637 0.0417 0.393 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 9.73e-01 0.00182 0.0542 0.393 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -115617 sc-eQTL 4.49e-01 -0.0487 0.0643 0.393 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -680712 sc-eQTL 6.06e-01 -0.0361 0.0698 0.393 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 5.90e-01 -0.0427 0.0791 0.393 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -449915 sc-eQTL 1.28e-01 -0.0768 0.0502 0.393 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -141698 sc-eQTL 1.18e-01 -0.0693 0.0441 0.393 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -292682 sc-eQTL 5.83e-01 0.0498 0.0904 0.393 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -793489 sc-eQTL 4.33e-02 -0.187 0.0922 0.393 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -890150 sc-eQTL 7.90e-01 -0.0203 0.0763 0.393 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -115617 sc-eQTL 3.66e-01 0.0646 0.0713 0.393 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -680712 sc-eQTL 2.93e-01 -0.0808 0.0766 0.397 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 1.80e-01 0.112 0.0836 0.397 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -449915 sc-eQTL 3.62e-01 0.0627 0.0687 0.397 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -141698 sc-eQTL 4.15e-02 -0.112 0.0545 0.397 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -292682 sc-eQTL 8.59e-01 0.0143 0.0804 0.397 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -793489 sc-eQTL 7.15e-01 -0.0304 0.0834 0.397 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -890150 sc-eQTL 5.09e-01 -0.0523 0.0791 0.397 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -115617 sc-eQTL 7.14e-01 -0.029 0.0792 0.397 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -680712 sc-eQTL 4.97e-01 -0.0598 0.0878 0.394 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -680906 sc-eQTL 8.03e-01 -0.015 0.0601 0.394 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -449915 sc-eQTL 6.89e-01 -0.0264 0.0658 0.394 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -141698 sc-eQTL 8.50e-01 -0.0139 0.0735 0.394 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -102428 sc-eQTL 7.75e-01 -0.0243 0.0848 0.394 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -115617 sc-eQTL 2.13e-01 -0.0912 0.0729 0.394 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060688 SNRNP40 -680712 eQTL 0.029 -0.0376 0.0172 0.00108 0.0 0.395

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina