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Genes within 1Mb (chr1:30591410:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -705378 sc-eQTL 3.31e-02 0.21 0.0977 0.825 B L1
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 7.70e-01 -0.0232 0.0791 0.825 B L1
ENSG00000134644 PUM1 -474581 sc-eQTL 8.66e-01 -0.0112 0.0664 0.825 B L1
ENSG00000162510 MATN1 -132175 sc-eQTL 5.20e-01 -0.0449 0.0697 0.825 B L1
ENSG00000162511 LAPTM5 -166364 sc-eQTL 8.18e-01 -0.0126 0.0546 0.825 B L1
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 1.23e-01 -0.0986 0.0637 0.825 B L1
ENSG00000287510 AL137857.1 -140283 sc-eQTL 9.46e-01 0.00513 0.0758 0.825 B L1
ENSG00000060688 SNRNP40 -705378 sc-eQTL 9.32e-01 0.0073 0.085 0.825 CD4T L1
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 8.92e-01 0.00903 0.0664 0.825 CD4T L1
ENSG00000134644 PUM1 -474581 sc-eQTL 5.82e-01 0.0326 0.0591 0.825 CD4T L1
ENSG00000162511 LAPTM5 -166364 sc-eQTL 5.41e-01 -0.0401 0.0655 0.825 CD4T L1
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 8.49e-01 0.0111 0.0586 0.825 CD4T L1
ENSG00000287510 AL137857.1 -140283 sc-eQTL 2.12e-01 0.0876 0.07 0.825 CD4T L1
ENSG00000060688 SNRNP40 -705378 sc-eQTL 8.51e-01 -0.0212 0.113 0.825 CD8T L1
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 5.03e-01 -0.0502 0.0749 0.825 CD8T L1
ENSG00000134644 PUM1 -474581 sc-eQTL 4.61e-01 0.0487 0.066 0.825 CD8T L1
ENSG00000162511 LAPTM5 -166364 sc-eQTL 1.69e-01 -0.0881 0.0638 0.825 CD8T L1
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 2.36e-02 -0.169 0.0743 0.825 CD8T L1
ENSG00000287510 AL137857.1 -140283 sc-eQTL 7.52e-01 0.0298 0.0944 0.825 CD8T L1
ENSG00000060688 SNRNP40 -705378 sc-eQTL 2.65e-01 -0.111 0.0996 0.822 DC L1
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 9.54e-01 -0.00684 0.118 0.822 DC L1
ENSG00000134644 PUM1 -474581 sc-eQTL 6.28e-01 -0.045 0.0926 0.822 DC L1
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.41e-01 -0.0308 0.0661 0.822 DC L1
ENSG00000168528 SERINC2 -818155 sc-eQTL 8.75e-01 0.0171 0.109 0.822 DC L1
ENSG00000284543 LINC01226 -914816 sc-eQTL 4.37e-01 0.0563 0.0722 0.822 DC L1
ENSG00000287510 AL137857.1 -140283 sc-eQTL 5.81e-01 0.0578 0.105 0.822 DC L1
ENSG00000060688 SNRNP40 -705378 sc-eQTL 5.91e-01 -0.0418 0.0777 0.825 Mono L1
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 2.41e-01 0.113 0.0961 0.825 Mono L1
ENSG00000134644 PUM1 -474581 sc-eQTL 3.33e-02 0.131 0.0611 0.825 Mono L1
ENSG00000162511 LAPTM5 -166364 sc-eQTL 1.23e-01 0.0874 0.0565 0.825 Mono L1
ENSG00000162512 SDC3 -317348 sc-eQTL 8.77e-01 -0.017 0.109 0.825 Mono L1
ENSG00000168528 SERINC2 -818155 sc-eQTL 1.85e-02 0.275 0.116 0.825 Mono L1
ENSG00000284543 LINC01226 -914816 sc-eQTL 2.20e-01 0.127 0.103 0.825 Mono L1
ENSG00000287510 AL137857.1 -140283 sc-eQTL 7.59e-01 -0.0277 0.0902 0.825 Mono L1
ENSG00000060688 SNRNP40 -705378 sc-eQTL 2.89e-02 0.24 0.109 0.824 NK L1
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 6.56e-01 -0.0338 0.0756 0.824 NK L1
ENSG00000134644 PUM1 -474581 sc-eQTL 5.06e-01 0.0528 0.0793 0.824 NK L1
ENSG00000162511 LAPTM5 -166364 sc-eQTL 8.86e-01 0.0131 0.0913 0.824 NK L1
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 8.13e-02 -0.178 0.102 0.824 NK L1
ENSG00000287510 AL137857.1 -140283 sc-eQTL 1.62e-01 0.132 0.0943 0.824 NK L1
ENSG00000060688 SNRNP40 -705378 sc-eQTL 6.70e-01 -0.035 0.082 0.825 Other_T L1
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 1.47e-01 -0.127 0.0873 0.825 Other_T L1
ENSG00000134644 PUM1 -474581 sc-eQTL 8.31e-01 -0.0169 0.0789 0.825 Other_T L1
ENSG00000162511 LAPTM5 -166364 sc-eQTL 7.46e-01 0.021 0.0646 0.825 Other_T L1
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 4.95e-01 -0.0722 0.106 0.825 Other_T L1
ENSG00000287510 AL137857.1 -140283 sc-eQTL 5.89e-01 0.0596 0.11 0.825 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -705378 sc-eQTL 6.19e-01 -0.0652 0.131 0.821 B_Activated L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 1.41e-01 -0.194 0.131 0.821 B_Activated L2
ENSG00000134644 PUM1 -474581 sc-eQTL 1.53e-01 0.175 0.122 0.821 B_Activated L2
ENSG00000162510 MATN1 -132175 sc-eQTL 3.75e-01 0.0953 0.107 0.821 B_Activated L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 5.58e-01 -0.0439 0.0748 0.821 B_Activated L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 2.44e-01 0.141 0.12 0.821 B_Activated L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 1.79e-01 -0.144 0.106 0.821 B_Activated L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 9.20e-01 0.0124 0.123 0.826 B_Intermediate L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 1.64e-02 0.244 0.101 0.826 B_Intermediate L2
ENSG00000134644 PUM1 -474581 sc-eQTL 8.97e-01 -0.0125 0.0965 0.826 B_Intermediate L2
ENSG00000162510 MATN1 -132175 sc-eQTL 3.19e-01 0.1 0.1 0.826 B_Intermediate L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 3.53e-01 0.0573 0.0615 0.826 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 9.80e-01 0.00217 0.0865 0.826 B_Intermediate L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 7.51e-01 0.0307 0.0968 0.826 B_Intermediate L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 9.69e-02 0.195 0.117 0.825 B_Memory L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 4.67e-01 0.0788 0.108 0.825 B_Memory L2
ENSG00000134644 PUM1 -474581 sc-eQTL 9.58e-01 0.00491 0.0942 0.825 B_Memory L2
ENSG00000162510 MATN1 -132175 sc-eQTL 3.76e-01 0.0798 0.0899 0.825 B_Memory L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 8.49e-01 0.0153 0.0799 0.825 B_Memory L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 8.59e-01 -0.0163 0.0914 0.825 B_Memory L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 8.55e-01 -0.0195 0.107 0.825 B_Memory L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 8.56e-02 0.185 0.107 0.825 B_Naive1 L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 1.57e-01 -0.132 0.0928 0.825 B_Naive1 L2
ENSG00000134644 PUM1 -474581 sc-eQTL 1.00e+00 3.82e-05 0.0823 0.825 B_Naive1 L2
ENSG00000162510 MATN1 -132175 sc-eQTL 1.80e-01 -0.112 0.0831 0.825 B_Naive1 L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 3.68e-01 0.0502 0.0557 0.825 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 2.46e-01 -0.0849 0.073 0.825 B_Naive1 L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 4.04e-01 0.0755 0.0903 0.825 B_Naive1 L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 9.74e-01 -0.00379 0.115 0.826 B_Naive2 L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 4.18e-02 -0.193 0.0941 0.826 B_Naive2 L2
ENSG00000134644 PUM1 -474581 sc-eQTL 6.49e-01 -0.0424 0.0929 0.826 B_Naive2 L2
ENSG00000162510 MATN1 -132175 sc-eQTL 3.58e-01 -0.0821 0.0891 0.826 B_Naive2 L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 7.79e-01 -0.0171 0.0606 0.826 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 5.44e-01 -0.0537 0.0882 0.826 B_Naive2 L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 3.41e-01 0.0908 0.0952 0.826 B_Naive2 L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 3.49e-01 -0.107 0.114 0.823 CD4_CTL L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 5.69e-01 -0.0638 0.112 0.823 CD4_CTL L2
ENSG00000134644 PUM1 -474581 sc-eQTL 3.76e-01 0.0974 0.11 0.823 CD4_CTL L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.68e-01 -0.0421 0.0979 0.823 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 3.62e-01 -0.0977 0.107 0.823 CD4_CTL L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 1.88e-01 0.124 0.0941 0.823 CD4_CTL L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 8.54e-01 0.0163 0.0886 0.825 CD4_Naive L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 3.86e-01 0.0681 0.0784 0.825 CD4_Naive L2
ENSG00000134644 PUM1 -474581 sc-eQTL 6.58e-01 0.0278 0.0627 0.825 CD4_Naive L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 4.80e-01 -0.0475 0.0671 0.825 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 4.50e-01 -0.0515 0.0681 0.825 CD4_Naive L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 7.60e-01 0.024 0.0783 0.825 CD4_Naive L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 6.52e-01 0.0506 0.112 0.825 CD4_TCM L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 2.12e-01 -0.113 0.0901 0.825 CD4_TCM L2
ENSG00000134644 PUM1 -474581 sc-eQTL 7.09e-01 0.0299 0.08 0.825 CD4_TCM L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.30e-01 0.032 0.0664 0.825 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 6.14e-02 0.157 0.0836 0.825 CD4_TCM L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 9.68e-01 -0.00374 0.0939 0.825 CD4_TCM L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 7.98e-01 -0.0286 0.111 0.825 CD4_TEM L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 3.91e-01 0.0911 0.106 0.825 CD4_TEM L2
ENSG00000134644 PUM1 -474581 sc-eQTL 5.92e-01 0.0475 0.0884 0.825 CD4_TEM L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 5.00e-01 -0.0604 0.0894 0.825 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 7.96e-02 0.183 0.104 0.825 CD4_TEM L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 7.61e-02 0.182 0.102 0.825 CD4_TEM L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 8.71e-01 -0.0199 0.122 0.825 CD8_CTL L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 9.50e-01 -0.00588 0.0939 0.825 CD8_CTL L2
ENSG00000134644 PUM1 -474581 sc-eQTL 2.06e-01 0.115 0.0909 0.825 CD8_CTL L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 3.60e-01 -0.0926 0.101 0.825 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 2.57e-01 -0.12 0.106 0.825 CD8_CTL L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 9.52e-01 0.00606 0.0999 0.825 CD8_CTL L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 7.46e-01 -0.0365 0.112 0.825 CD8_Naive L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 4.42e-01 -0.0745 0.0967 0.825 CD8_Naive L2
ENSG00000134644 PUM1 -474581 sc-eQTL 8.39e-01 0.0158 0.0779 0.825 CD8_Naive L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 7.55e-01 0.0233 0.0747 0.825 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 3.60e-02 -0.195 0.0922 0.825 CD8_Naive L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 2.81e-01 0.109 0.101 0.825 CD8_Naive L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 8.94e-02 -0.216 0.126 0.829 CD8_TCM L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 9.39e-01 -0.00892 0.117 0.829 CD8_TCM L2
ENSG00000134644 PUM1 -474581 sc-eQTL 7.57e-01 -0.034 0.11 0.829 CD8_TCM L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 1.75e-01 -0.156 0.114 0.829 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 9.51e-01 0.00649 0.106 0.829 CD8_TCM L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 1.42e-01 -0.157 0.107 0.829 CD8_TCM L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 4.48e-01 0.0876 0.115 0.817 CD8_TEM L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 4.28e-01 0.0877 0.11 0.817 CD8_TEM L2
ENSG00000134644 PUM1 -474581 sc-eQTL 8.84e-01 -0.0166 0.113 0.817 CD8_TEM L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.08e-01 -0.0545 0.106 0.817 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 9.16e-01 0.0117 0.11 0.817 CD8_TEM L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 6.68e-01 0.0429 0.0997 0.817 CD8_TEM L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 5.67e-01 -0.0689 0.12 0.825 MAIT L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 9.45e-01 -0.00735 0.107 0.825 MAIT L2
ENSG00000134644 PUM1 -474581 sc-eQTL 3.82e-01 -0.0893 0.102 0.825 MAIT L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 4.11e-01 0.0794 0.0963 0.825 MAIT L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 1.11e-01 -0.171 0.107 0.825 MAIT L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 5.86e-01 0.0603 0.111 0.825 MAIT L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 5.38e-01 0.0764 0.124 0.831 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 9.34e-01 -0.00865 0.105 0.831 NK_CD56bright L2
ENSG00000134644 PUM1 -474581 sc-eQTL 3.41e-01 0.105 0.11 0.831 NK_CD56bright L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 1.68e-01 0.15 0.108 0.831 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 4.06e-01 0.0909 0.109 0.831 NK_CD56bright L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 4.83e-01 0.0756 0.107 0.831 NK_CD56bright L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 1.33e-01 0.177 0.117 0.825 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 1.17e-01 -0.136 0.0867 0.825 NK_CD56dim L2
ENSG00000134644 PUM1 -474581 sc-eQTL 4.63e-01 0.0657 0.0894 0.825 NK_CD56dim L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 9.86e-01 -0.00171 0.0954 0.825 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 2.18e-02 -0.273 0.118 0.825 NK_CD56dim L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 2.85e-01 0.106 0.0984 0.825 NK_CD56dim L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 6.04e-01 -0.0633 0.122 0.822 NK_HLA L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 6.58e-02 0.2 0.108 0.822 NK_HLA L2
ENSG00000134644 PUM1 -474581 sc-eQTL 1.01e-01 0.174 0.105 0.822 NK_HLA L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 9.43e-01 -0.0073 0.101 0.822 NK_HLA L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 6.48e-01 -0.0492 0.108 0.822 NK_HLA L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 2.36e-01 0.124 0.104 0.822 NK_HLA L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 9.38e-02 0.19 0.113 0.825 NK_cytokine L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 8.41e-01 0.0178 0.0885 0.825 NK_cytokine L2
ENSG00000134644 PUM1 -474581 sc-eQTL 9.69e-01 0.00367 0.0957 0.825 NK_cytokine L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 7.24e-01 0.0373 0.105 0.825 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 4.98e-01 -0.0758 0.112 0.825 NK_cytokine L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 4.62e-01 0.0765 0.104 0.825 NK_cytokine L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 9.31e-03 0.38 0.144 0.852 PB L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 6.14e-01 -0.0867 0.172 0.852 PB L2
ENSG00000134644 PUM1 -474581 sc-eQTL 6.22e-01 -0.0736 0.149 0.852 PB L2
ENSG00000162510 MATN1 -132175 sc-eQTL 8.85e-01 0.0201 0.139 0.852 PB L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 7.06e-01 -0.0376 0.0993 0.852 PB L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 6.51e-01 -0.0616 0.136 0.852 PB L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 5.65e-02 -0.274 0.142 0.852 PB L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 4.87e-01 0.0629 0.0903 0.826 Pro_T L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 4.22e-01 -0.0921 0.115 0.826 Pro_T L2
ENSG00000134644 PUM1 -474581 sc-eQTL 9.83e-01 0.00227 0.107 0.826 Pro_T L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 4.95e-01 0.0524 0.0767 0.826 Pro_T L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 6.57e-01 -0.0477 0.107 0.826 Pro_T L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 8.78e-01 -0.0152 0.0987 0.826 Pro_T L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 1.34e-01 -0.173 0.115 0.825 Treg L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 6.43e-01 0.0518 0.111 0.825 Treg L2
ENSG00000134644 PUM1 -474581 sc-eQTL 9.92e-01 0.000893 0.0893 0.825 Treg L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 4.10e-01 0.0843 0.102 0.825 Treg L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 7.24e-01 -0.0369 0.104 0.825 Treg L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 9.24e-01 0.00999 0.104 0.825 Treg L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 1.77e-01 -0.157 0.116 0.832 cDC L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 7.47e-01 0.0407 0.126 0.832 cDC L2
ENSG00000134644 PUM1 -474581 sc-eQTL 3.26e-01 0.106 0.108 0.832 cDC L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.76e-01 -0.0317 0.0758 0.832 cDC L2
ENSG00000168528 SERINC2 -818155 sc-eQTL 2.37e-01 0.115 0.097 0.832 cDC L2
ENSG00000284543 LINC01226 -914816 sc-eQTL 8.29e-01 0.0206 0.0956 0.832 cDC L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 5.54e-01 0.0609 0.103 0.832 cDC L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 8.52e-01 0.0175 0.0939 0.825 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 6.47e-01 0.048 0.105 0.825 cMono_IL1B L2
ENSG00000134644 PUM1 -474581 sc-eQTL 1.98e-01 0.0912 0.0707 0.825 cMono_IL1B L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 2.31e-01 0.0746 0.062 0.825 cMono_IL1B L2
ENSG00000162512 SDC3 -317348 sc-eQTL 9.69e-01 0.00462 0.117 0.825 cMono_IL1B L2
ENSG00000168528 SERINC2 -818155 sc-eQTL 2.10e-02 0.273 0.117 0.825 cMono_IL1B L2
ENSG00000284543 LINC01226 -914816 sc-eQTL 2.30e-01 0.126 0.105 0.825 cMono_IL1B L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 6.70e-01 0.0417 0.0978 0.825 cMono_IL1B L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 5.10e-01 -0.0646 0.098 0.825 cMono_S100A L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 3.44e-01 0.11 0.116 0.825 cMono_S100A L2
ENSG00000134644 PUM1 -474581 sc-eQTL 2.95e-02 0.182 0.0829 0.825 cMono_S100A L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 2.60e-01 0.0726 0.0642 0.825 cMono_S100A L2
ENSG00000162512 SDC3 -317348 sc-eQTL 2.92e-01 -0.117 0.111 0.825 cMono_S100A L2
ENSG00000168528 SERINC2 -818155 sc-eQTL 9.93e-04 0.383 0.115 0.825 cMono_S100A L2
ENSG00000284543 LINC01226 -914816 sc-eQTL 9.68e-01 -0.00387 0.0957 0.825 cMono_S100A L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 5.63e-01 0.0556 0.096 0.825 cMono_S100A L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 7.83e-01 -0.0387 0.14 0.806 gdT L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 1.92e-01 0.157 0.12 0.806 gdT L2
ENSG00000134644 PUM1 -474581 sc-eQTL 1.22e-01 0.191 0.123 0.806 gdT L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 4.19e-01 0.109 0.135 0.806 gdT L2
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 7.50e-01 0.0397 0.124 0.806 gdT L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 5.01e-01 -0.0812 0.12 0.806 gdT L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 9.72e-01 0.00386 0.11 0.818 intMono L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 2.58e-01 0.133 0.117 0.818 intMono L2
ENSG00000134644 PUM1 -474581 sc-eQTL 5.18e-01 0.0647 0.0998 0.818 intMono L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 5.03e-01 0.0525 0.0783 0.818 intMono L2
ENSG00000162512 SDC3 -317348 sc-eQTL 9.29e-01 -0.00952 0.107 0.818 intMono L2
ENSG00000168528 SERINC2 -818155 sc-eQTL 3.57e-01 0.103 0.112 0.818 intMono L2
ENSG00000284543 LINC01226 -914816 sc-eQTL 5.09e-01 0.0704 0.106 0.818 intMono L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 6.71e-02 -0.194 0.106 0.818 intMono L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 1.71e-01 -0.139 0.101 0.824 ncMono L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 4.55e-01 -0.081 0.108 0.824 ncMono L2
ENSG00000134644 PUM1 -474581 sc-eQTL 3.12e-01 0.0895 0.0883 0.824 ncMono L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 8.12e-01 -0.0191 0.0804 0.824 ncMono L2
ENSG00000162512 SDC3 -317348 sc-eQTL 5.08e-01 -0.0597 0.09 0.824 ncMono L2
ENSG00000168528 SERINC2 -818155 sc-eQTL 6.50e-01 0.0447 0.0983 0.824 ncMono L2
ENSG00000284543 LINC01226 -914816 sc-eQTL 4.00e-01 -0.0827 0.0981 0.824 ncMono L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 6.49e-01 0.0464 0.102 0.824 ncMono L2
ENSG00000060688 SNRNP40 -705378 sc-eQTL 1.61e-01 -0.162 0.115 0.825 pDC L2
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 5.93e-01 -0.0681 0.127 0.825 pDC L2
ENSG00000134644 PUM1 -474581 sc-eQTL 5.07e-01 -0.0701 0.105 0.825 pDC L2
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.24e-01 0.0481 0.098 0.825 pDC L2
ENSG00000168528 SERINC2 -818155 sc-eQTL 5.78e-01 -0.0662 0.119 0.825 pDC L2
ENSG00000284543 LINC01226 -914816 sc-eQTL 7.21e-01 -0.033 0.0923 0.825 pDC L2
ENSG00000287510 AL137857.1 -140283 sc-eQTL 3.35e-01 0.105 0.108 0.825 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -705378 sc-eQTL 3.59e-01 0.107 0.116 0.825 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 6.92e-02 0.176 0.0962 0.825 B_Memory LOneK1K
ENSG00000134644 PUM1 -474581 sc-eQTL 4.60e-01 0.0635 0.0858 0.825 B_Memory LOneK1K
ENSG00000162510 MATN1 -132175 sc-eQTL 9.96e-02 0.161 0.0973 0.825 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.83e-01 0.0252 0.0615 0.825 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 7.60e-01 0.0249 0.0814 0.825 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -140283 sc-eQTL 6.47e-01 -0.0406 0.0886 0.825 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -705378 sc-eQTL 3.24e-01 0.104 0.105 0.825 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 3.93e-02 -0.171 0.0826 0.825 B_Naive LOneK1K
ENSG00000134644 PUM1 -474581 sc-eQTL 5.52e-01 -0.0469 0.0789 0.825 B_Naive LOneK1K
ENSG00000162510 MATN1 -132175 sc-eQTL 1.73e-01 -0.103 0.0757 0.825 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -166364 sc-eQTL 4.53e-01 0.0402 0.0534 0.825 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 1.95e-01 -0.0896 0.0688 0.825 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -140283 sc-eQTL 4.20e-01 0.0662 0.082 0.825 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -705378 sc-eQTL 6.38e-01 -0.0421 0.0894 0.825 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 2.13e-01 0.126 0.101 0.825 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -474581 sc-eQTL 5.21e-02 0.125 0.064 0.825 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -166364 sc-eQTL 1.25e-01 0.087 0.0565 0.825 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -317348 sc-eQTL 8.74e-01 -0.0184 0.116 0.825 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -818155 sc-eQTL 1.14e-02 0.3 0.117 0.825 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -914816 sc-eQTL 4.88e-01 0.0678 0.0976 0.825 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -140283 sc-eQTL 7.70e-01 0.0268 0.0914 0.825 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -705378 sc-eQTL 6.42e-01 -0.0452 0.0971 0.823 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 9.61e-01 0.00522 0.106 0.823 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -474581 sc-eQTL 3.38e-01 0.0835 0.0869 0.823 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -166364 sc-eQTL 6.86e-01 0.0282 0.0696 0.823 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -317348 sc-eQTL 8.62e-01 0.0177 0.102 0.823 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -818155 sc-eQTL 3.30e-01 0.103 0.105 0.823 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -914816 sc-eQTL 6.57e-01 0.0445 0.1 0.823 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -140283 sc-eQTL 3.27e-01 -0.0982 0.1 0.823 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -705378 sc-eQTL 2.51e-02 0.247 0.11 0.825 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -705572 sc-eQTL 7.98e-01 -0.0194 0.0758 0.825 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -474581 sc-eQTL 3.47e-01 0.0781 0.0829 0.825 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -166364 sc-eQTL 8.78e-01 -0.0143 0.0929 0.825 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -127094 sc-eQTL 2.83e-02 -0.234 0.106 0.825 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -140283 sc-eQTL 2.06e-01 0.117 0.0921 0.825 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000284543 \N -914871 2.74e-07 1.25e-07 5.14e-08 1.82e-07 9.79e-08 9.76e-08 1.53e-07 5.48e-08 1.45e-07 5.42e-08 1.54e-07 9e-08 1.45e-07 6.76e-08 5.91e-08 7.36e-08 4.17e-08 1.27e-07 5.97e-08 4.23e-08 1.21e-07 1.27e-07 1.44e-07 3.03e-08 1.46e-07 1.21e-07 1.07e-07 9.61e-08 1.12e-07 1.07e-07 9.7e-08 3.26e-08 3.89e-08 8.25e-08 7.36e-08 3.49e-08 5.11e-08 8.93e-08 6.54e-08 3.76e-08 5.45e-08 1.35e-07 5.2e-08 1.42e-08 4.67e-08 1.84e-08 1.21e-07 1.88e-09 5.02e-08