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Genes within 1Mb (chr1:30591356:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -705432 sc-eQTL 3.65e-01 0.0706 0.0777 0.436 B L1
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 8.05e-02 -0.109 0.0619 0.436 B L1
ENSG00000134644 PUM1 -474635 sc-eQTL 6.76e-01 0.0219 0.0523 0.436 B L1
ENSG00000162510 MATN1 -132229 sc-eQTL 9.51e-01 0.00336 0.055 0.436 B L1
ENSG00000162511 LAPTM5 -166418 sc-eQTL 3.03e-01 -0.0444 0.043 0.436 B L1
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 7.91e-01 -0.0134 0.0505 0.436 B L1
ENSG00000287510 AL137857.1 -140337 sc-eQTL 9.12e-01 -0.00659 0.0597 0.436 B L1
ENSG00000060688 SNRNP40 -705432 sc-eQTL 3.13e-01 -0.0683 0.0674 0.436 CD4T L1
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 9.84e-01 0.00105 0.0528 0.436 CD4T L1
ENSG00000134644 PUM1 -474635 sc-eQTL 7.70e-01 0.0138 0.047 0.436 CD4T L1
ENSG00000162511 LAPTM5 -166418 sc-eQTL 3.69e-01 0.0468 0.052 0.436 CD4T L1
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 3.46e-01 -0.0439 0.0465 0.436 CD4T L1
ENSG00000287510 AL137857.1 -140337 sc-eQTL 5.52e-01 -0.0333 0.0558 0.436 CD4T L1
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.06e-01 -0.112 0.0881 0.436 CD8T L1
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 2.46e-01 -0.0683 0.0587 0.436 CD8T L1
ENSG00000134644 PUM1 -474635 sc-eQTL 2.17e-01 0.064 0.0516 0.436 CD8T L1
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.34e-01 -0.0394 0.0503 0.436 CD8T L1
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 2.25e-01 -0.0715 0.0588 0.436 CD8T L1
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.58e-01 -0.104 0.0738 0.436 CD8T L1
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.80e-01 -0.0851 0.0785 0.437 DC L1
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 3.54e-01 -0.0865 0.0931 0.437 DC L1
ENSG00000134644 PUM1 -474635 sc-eQTL 8.26e-01 -0.0161 0.073 0.437 DC L1
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.15e-01 0.0426 0.0521 0.437 DC L1
ENSG00000168528 SERINC2 -818209 sc-eQTL 3.07e-01 0.0878 0.0858 0.437 DC L1
ENSG00000284543 LINC01226 -914870 sc-eQTL 2.19e-01 0.0701 0.0568 0.437 DC L1
ENSG00000287510 AL137857.1 -140337 sc-eQTL 3.88e-01 0.0713 0.0823 0.437 DC L1
ENSG00000060688 SNRNP40 -705432 sc-eQTL 9.46e-01 0.00416 0.0617 0.436 Mono L1
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 3.83e-01 0.0668 0.0763 0.436 Mono L1
ENSG00000134644 PUM1 -474635 sc-eQTL 9.88e-04 0.16 0.0478 0.436 Mono L1
ENSG00000162511 LAPTM5 -166418 sc-eQTL 3.30e-01 0.0439 0.045 0.436 Mono L1
ENSG00000162512 SDC3 -317402 sc-eQTL 2.42e-01 -0.101 0.0864 0.436 Mono L1
ENSG00000168528 SERINC2 -818209 sc-eQTL 2.64e-01 0.104 0.0927 0.436 Mono L1
ENSG00000284543 LINC01226 -914870 sc-eQTL 2.96e-01 0.0856 0.0817 0.436 Mono L1
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.45e-01 -0.0832 0.0714 0.436 Mono L1
ENSG00000060688 SNRNP40 -705432 sc-eQTL 1.46e-01 0.126 0.0864 0.436 NK L1
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 5.60e-01 0.0347 0.0594 0.436 NK L1
ENSG00000134644 PUM1 -474635 sc-eQTL 2.77e-01 0.0678 0.0622 0.436 NK L1
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.79e-01 -0.0508 0.0717 0.436 NK L1
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 7.59e-01 0.0248 0.0806 0.436 NK L1
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.71e-01 -0.082 0.0742 0.436 NK L1
ENSG00000060688 SNRNP40 -705432 sc-eQTL 7.98e-01 -0.0167 0.0649 0.436 Other_T L1
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 2.29e-01 -0.0834 0.0691 0.436 Other_T L1
ENSG00000134644 PUM1 -474635 sc-eQTL 8.38e-01 -0.0128 0.0624 0.436 Other_T L1
ENSG00000162511 LAPTM5 -166418 sc-eQTL 5.78e-01 0.0285 0.0511 0.436 Other_T L1
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 5.52e-01 -0.0499 0.0837 0.436 Other_T L1
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.19e-01 -0.136 0.0867 0.436 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -705432 sc-eQTL 5.81e-01 0.058 0.105 0.431 B_Activated L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 9.02e-01 0.0131 0.106 0.431 B_Activated L2
ENSG00000134644 PUM1 -474635 sc-eQTL 1.16e-01 -0.155 0.0979 0.431 B_Activated L2
ENSG00000162510 MATN1 -132229 sc-eQTL 6.31e-01 0.0414 0.0861 0.431 B_Activated L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 7.90e-01 -0.016 0.0601 0.431 B_Activated L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 1.84e-02 0.227 0.0954 0.431 B_Activated L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 3.44e-01 -0.0812 0.0856 0.431 B_Activated L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 5.09e-01 -0.064 0.0966 0.438 B_Intermediate L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 7.06e-01 0.0305 0.0806 0.438 B_Intermediate L2
ENSG00000134644 PUM1 -474635 sc-eQTL 1.77e-01 0.103 0.0757 0.438 B_Intermediate L2
ENSG00000162510 MATN1 -132229 sc-eQTL 4.46e-01 0.0604 0.079 0.438 B_Intermediate L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 7.74e-01 0.014 0.0486 0.438 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.35e-01 -0.0143 0.0681 0.438 B_Intermediate L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.96e-02 0.177 0.0753 0.438 B_Intermediate L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 3.70e-01 0.0835 0.0929 0.438 B_Memory L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 2.85e-01 -0.0917 0.0855 0.438 B_Memory L2
ENSG00000134644 PUM1 -474635 sc-eQTL 8.38e-01 0.0152 0.0746 0.438 B_Memory L2
ENSG00000162510 MATN1 -132229 sc-eQTL 3.54e-01 0.0661 0.0713 0.438 B_Memory L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 3.35e-01 -0.061 0.0632 0.438 B_Memory L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 1.88e-01 0.0953 0.0721 0.438 B_Memory L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 6.78e-01 0.0353 0.0848 0.438 B_Memory L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 1.66e-01 0.118 0.0849 0.436 B_Naive1 L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 1.02e-01 -0.12 0.0732 0.436 B_Naive1 L2
ENSG00000134644 PUM1 -474635 sc-eQTL 9.19e-01 0.00663 0.065 0.436 B_Naive1 L2
ENSG00000162510 MATN1 -132229 sc-eQTL 9.91e-01 0.000746 0.0659 0.436 B_Naive1 L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.73e-01 0.0316 0.044 0.436 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 4.32e-01 -0.0455 0.0577 0.436 B_Naive1 L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 6.55e-01 -0.0319 0.0714 0.436 B_Naive1 L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 6.86e-01 -0.0368 0.091 0.436 B_Naive2 L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 8.23e-02 -0.13 0.0747 0.436 B_Naive2 L2
ENSG00000134644 PUM1 -474635 sc-eQTL 9.04e-01 0.00892 0.0736 0.436 B_Naive2 L2
ENSG00000162510 MATN1 -132229 sc-eQTL 8.36e-01 -0.0146 0.0706 0.436 B_Naive2 L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 7.79e-01 0.0135 0.048 0.436 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 6.25e-01 0.0342 0.0698 0.436 B_Naive2 L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 5.88e-01 -0.0409 0.0754 0.436 B_Naive2 L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 7.66e-01 0.0271 0.0912 0.434 CD4_CTL L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 2.82e-01 -0.0964 0.0894 0.434 CD4_CTL L2
ENSG00000134644 PUM1 -474635 sc-eQTL 6.72e-01 -0.0373 0.0879 0.434 CD4_CTL L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 7.01e-01 -0.0301 0.0784 0.434 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.37e-01 0.0176 0.0857 0.434 CD4_CTL L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.81e-01 0.101 0.0753 0.434 CD4_CTL L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 4.10e-01 -0.058 0.0702 0.436 CD4_Naive L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 6.07e-01 0.0321 0.0623 0.436 CD4_Naive L2
ENSG00000134644 PUM1 -474635 sc-eQTL 7.19e-01 -0.018 0.0498 0.436 CD4_Naive L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.16e-01 0.0434 0.0533 0.436 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.05e-02 -0.0944 0.0538 0.436 CD4_Naive L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 7.07e-01 -0.0234 0.0622 0.436 CD4_Naive L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.74e-01 -0.0964 0.088 0.436 CD4_TCM L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 4.88e-01 -0.0494 0.071 0.436 CD4_TCM L2
ENSG00000134644 PUM1 -474635 sc-eQTL 4.75e-01 0.045 0.0629 0.436 CD4_TCM L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 5.67e-01 0.0299 0.0522 0.436 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 4.80e-01 0.0468 0.0662 0.436 CD4_TCM L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.52e-01 -0.0845 0.0736 0.436 CD4_TCM L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 3.60e-01 -0.0806 0.0878 0.436 CD4_TEM L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 7.04e-02 0.151 0.0832 0.436 CD4_TEM L2
ENSG00000134644 PUM1 -474635 sc-eQTL 2.12e-01 0.087 0.0695 0.436 CD4_TEM L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 5.32e-01 -0.0441 0.0705 0.436 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 7.46e-01 -0.0268 0.0826 0.436 CD4_TEM L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 3.67e-01 0.0734 0.0812 0.436 CD4_TEM L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 1.39e-01 -0.143 0.0964 0.436 CD8_CTL L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 6.32e-01 -0.0356 0.0743 0.436 CD8_CTL L2
ENSG00000134644 PUM1 -474635 sc-eQTL 1.42e-01 0.106 0.0718 0.436 CD8_CTL L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.39e-01 -0.0618 0.0798 0.436 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 2.70e-01 -0.0927 0.0838 0.436 CD8_CTL L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.28e-01 -0.12 0.0786 0.436 CD8_CTL L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 9.00e-01 0.011 0.0879 0.436 CD8_Naive L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 4.16e-01 -0.0616 0.0757 0.436 CD8_Naive L2
ENSG00000134644 PUM1 -474635 sc-eQTL 1.08e-01 0.0978 0.0606 0.436 CD8_Naive L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 9.89e-02 0.0963 0.0581 0.436 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 9.36e-02 -0.122 0.0725 0.436 CD8_Naive L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 9.12e-01 -0.00882 0.0794 0.436 CD8_Naive L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 1.45e-02 -0.237 0.0961 0.435 CD8_TCM L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 7.91e-01 0.0237 0.0895 0.435 CD8_TCM L2
ENSG00000134644 PUM1 -474635 sc-eQTL 2.59e-01 -0.0949 0.0838 0.435 CD8_TCM L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 2.24e-01 -0.107 0.0877 0.435 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.19e-01 -0.0187 0.0815 0.435 CD8_TCM L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 6.99e-01 -0.0319 0.0824 0.435 CD8_TCM L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 4.77e-01 0.0647 0.0908 0.443 CD8_TEM L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 4.89e-02 -0.171 0.0863 0.443 CD8_TEM L2
ENSG00000134644 PUM1 -474635 sc-eQTL 4.28e-01 -0.0706 0.0889 0.443 CD8_TEM L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 1.51e-01 -0.12 0.0833 0.443 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.13e-01 0.0206 0.0869 0.443 CD8_TEM L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 5.26e-01 -0.0499 0.0786 0.443 CD8_TEM L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.07e-01 -0.117 0.0925 0.435 MAIT L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 4.37e-01 -0.064 0.0822 0.435 MAIT L2
ENSG00000134644 PUM1 -474635 sc-eQTL 5.06e-01 -0.0525 0.0788 0.435 MAIT L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 8.45e-02 0.128 0.0739 0.435 MAIT L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 7.93e-01 -0.0217 0.0829 0.435 MAIT L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 3.33e-01 -0.0827 0.0852 0.435 MAIT L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 4.17e-01 0.078 0.096 0.442 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 2.73e-01 0.0889 0.081 0.442 NK_CD56bright L2
ENSG00000134644 PUM1 -474635 sc-eQTL 3.80e-01 0.0748 0.0851 0.442 NK_CD56bright L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 9.31e-01 0.00734 0.0841 0.442 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 9.63e-01 -0.00394 0.0845 0.442 NK_CD56bright L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 5.62e-01 -0.0483 0.0832 0.442 NK_CD56bright L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 9.74e-01 0.00303 0.0919 0.438 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 7.19e-01 -0.0244 0.068 0.438 NK_CD56dim L2
ENSG00000134644 PUM1 -474635 sc-eQTL 3.76e-01 0.0617 0.0696 0.438 NK_CD56dim L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.92e-01 -0.0511 0.0743 0.438 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.50e-01 -0.0176 0.0932 0.438 NK_CD56dim L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 8.87e-01 -0.0109 0.0769 0.438 NK_CD56dim L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 5.41e-01 0.0597 0.0973 0.432 NK_HLA L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 7.06e-01 -0.0329 0.087 0.432 NK_HLA L2
ENSG00000134644 PUM1 -474635 sc-eQTL 4.61e-01 0.0626 0.0847 0.432 NK_HLA L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 2.25e-01 -0.0981 0.0806 0.432 NK_HLA L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 7.38e-01 -0.0288 0.0861 0.432 NK_HLA L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.29e-01 -0.126 0.0827 0.432 NK_HLA L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.36e-01 0.107 0.0897 0.438 NK_cytokine L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 2.87e-01 0.0748 0.07 0.438 NK_cytokine L2
ENSG00000134644 PUM1 -474635 sc-eQTL 7.47e-01 0.0245 0.0759 0.438 NK_cytokine L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.39e-01 -0.0647 0.0835 0.438 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 9.16e-01 0.00935 0.0886 0.438 NK_cytokine L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 4.59e-01 -0.0611 0.0823 0.438 NK_cytokine L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 6.85e-01 -0.0437 0.108 0.474 PB L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 8.56e-02 -0.214 0.123 0.474 PB L2
ENSG00000134644 PUM1 -474635 sc-eQTL 6.97e-01 -0.0424 0.108 0.474 PB L2
ENSG00000162510 MATN1 -132229 sc-eQTL 5.50e-01 0.0605 0.101 0.474 PB L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 5.67e-01 0.0415 0.0722 0.474 PB L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.37e-01 0.0204 0.0989 0.474 PB L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.61e-01 -0.118 0.105 0.474 PB L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.35e-01 -0.0827 0.0695 0.435 Pro_T L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 4.77e-01 -0.063 0.0884 0.435 Pro_T L2
ENSG00000134644 PUM1 -474635 sc-eQTL 2.14e-01 -0.102 0.0822 0.435 Pro_T L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 2.89e-01 -0.0628 0.0591 0.435 Pro_T L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 1.29e-01 -0.125 0.0823 0.435 Pro_T L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.93e-01 -0.099 0.0758 0.435 Pro_T L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 1.29e-01 -0.137 0.0902 0.436 Treg L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 5.20e-01 -0.0565 0.0877 0.436 Treg L2
ENSG00000134644 PUM1 -474635 sc-eQTL 1.97e-01 0.0906 0.07 0.436 Treg L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 5.70e-01 0.0457 0.0804 0.436 Treg L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 2.67e-01 -0.0909 0.0817 0.436 Treg L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 9.48e-01 -0.00539 0.0818 0.436 Treg L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 3.65e-01 -0.0823 0.0907 0.441 cDC L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 5.46e-01 0.0595 0.0984 0.441 cDC L2
ENSG00000134644 PUM1 -474635 sc-eQTL 9.37e-01 -0.00671 0.0846 0.441 cDC L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 9.57e-01 -0.00323 0.0593 0.441 cDC L2
ENSG00000168528 SERINC2 -818209 sc-eQTL 8.07e-02 0.133 0.0755 0.441 cDC L2
ENSG00000284543 LINC01226 -914870 sc-eQTL 1.54e-01 -0.107 0.0744 0.441 cDC L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.90e-01 0.0852 0.0802 0.441 cDC L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 7.35e-01 -0.0251 0.0742 0.436 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 6.94e-01 0.0326 0.0828 0.436 cMono_IL1B L2
ENSG00000134644 PUM1 -474635 sc-eQTL 3.43e-03 0.163 0.0549 0.436 cMono_IL1B L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 6.18e-01 0.0245 0.0492 0.436 cMono_IL1B L2
ENSG00000162512 SDC3 -317402 sc-eQTL 3.62e-01 -0.0845 0.0925 0.436 cMono_IL1B L2
ENSG00000168528 SERINC2 -818209 sc-eQTL 2.09e-01 0.118 0.0935 0.436 cMono_IL1B L2
ENSG00000284543 LINC01226 -914870 sc-eQTL 8.26e-01 0.0182 0.0829 0.436 cMono_IL1B L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 6.08e-01 -0.0397 0.0773 0.436 cMono_IL1B L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 8.24e-01 -0.0174 0.0784 0.436 cMono_S100A L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 5.00e-01 0.0626 0.0926 0.436 cMono_S100A L2
ENSG00000134644 PUM1 -474635 sc-eQTL 1.39e-01 0.0989 0.0667 0.436 cMono_S100A L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.83e-01 0.0362 0.0514 0.436 cMono_S100A L2
ENSG00000162512 SDC3 -317402 sc-eQTL 3.42e-01 -0.0846 0.0888 0.436 cMono_S100A L2
ENSG00000168528 SERINC2 -818209 sc-eQTL 1.12e-01 0.15 0.0936 0.436 cMono_S100A L2
ENSG00000284543 LINC01226 -914870 sc-eQTL 4.08e-01 0.0634 0.0764 0.436 cMono_S100A L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.10e-01 -0.0963 0.0765 0.436 cMono_S100A L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.30e-01 0.137 0.114 0.445 gdT L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 5.55e-01 0.0581 0.0981 0.445 gdT L2
ENSG00000134644 PUM1 -474635 sc-eQTL 2.97e-01 0.105 0.101 0.445 gdT L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 5.79e-01 -0.0611 0.11 0.445 gdT L2
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 8.14e-01 0.0239 0.102 0.445 gdT L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 5.98e-02 -0.184 0.0971 0.445 gdT L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.58e-01 0.0971 0.0855 0.431 intMono L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 7.64e-01 -0.0278 0.0922 0.431 intMono L2
ENSG00000134644 PUM1 -474635 sc-eQTL 6.99e-01 -0.0302 0.0782 0.431 intMono L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.84e-01 0.043 0.0613 0.431 intMono L2
ENSG00000162512 SDC3 -317402 sc-eQTL 3.49e-01 -0.0787 0.0839 0.431 intMono L2
ENSG00000168528 SERINC2 -818209 sc-eQTL 5.98e-01 0.0465 0.0879 0.431 intMono L2
ENSG00000284543 LINC01226 -914870 sc-eQTL 6.68e-01 0.0358 0.0833 0.431 intMono L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.57e-01 -0.0946 0.0831 0.431 intMono L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 7.73e-02 0.143 0.0804 0.441 ncMono L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 7.97e-01 0.0222 0.0864 0.441 ncMono L2
ENSG00000134644 PUM1 -474635 sc-eQTL 3.49e-01 0.0662 0.0705 0.441 ncMono L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 2.76e-01 0.0699 0.0639 0.441 ncMono L2
ENSG00000162512 SDC3 -317402 sc-eQTL 1.01e-02 -0.184 0.0707 0.441 ncMono L2
ENSG00000168528 SERINC2 -818209 sc-eQTL 7.43e-01 0.0257 0.0785 0.441 ncMono L2
ENSG00000284543 LINC01226 -914870 sc-eQTL 1.81e-01 0.105 0.0781 0.441 ncMono L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.56e-01 -0.0922 0.081 0.441 ncMono L2
ENSG00000060688 SNRNP40 -705432 sc-eQTL 4.94e-01 -0.0629 0.0917 0.432 pDC L2
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 9.06e-01 0.012 0.101 0.432 pDC L2
ENSG00000134644 PUM1 -474635 sc-eQTL 6.46e-02 0.154 0.0826 0.432 pDC L2
ENSG00000162511 LAPTM5 -166418 sc-eQTL 5.57e-01 0.0457 0.0776 0.432 pDC L2
ENSG00000168528 SERINC2 -818209 sc-eQTL 7.37e-01 0.0317 0.0942 0.432 pDC L2
ENSG00000284543 LINC01226 -914870 sc-eQTL 6.45e-01 0.0338 0.0731 0.432 pDC L2
ENSG00000287510 AL137857.1 -140337 sc-eQTL 5.56e-02 -0.164 0.085 0.432 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -705432 sc-eQTL 4.37e-01 0.071 0.0912 0.436 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 9.02e-01 -0.00936 0.076 0.436 B_Memory LOneK1K
ENSG00000134644 PUM1 -474635 sc-eQTL 1.80e-01 0.0901 0.0671 0.436 B_Memory LOneK1K
ENSG00000162510 MATN1 -132229 sc-eQTL 3.92e-01 0.0658 0.0766 0.436 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -166418 sc-eQTL 6.51e-01 -0.0219 0.0482 0.436 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 2.74e-01 0.0697 0.0636 0.436 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -140337 sc-eQTL 2.09e-01 0.0872 0.0693 0.436 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -705432 sc-eQTL 2.44e-01 0.0974 0.0833 0.436 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 3.26e-02 -0.141 0.0654 0.436 B_Naive LOneK1K
ENSG00000134644 PUM1 -474635 sc-eQTL 4.69e-01 0.0453 0.0624 0.436 B_Naive LOneK1K
ENSG00000162510 MATN1 -132229 sc-eQTL 7.60e-01 -0.0184 0.0602 0.436 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -166418 sc-eQTL 2.31e-01 0.0508 0.0422 0.436 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 3.31e-01 -0.0532 0.0546 0.436 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -140337 sc-eQTL 7.70e-01 -0.019 0.065 0.436 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -705432 sc-eQTL 4.56e-01 -0.0529 0.0707 0.436 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 4.91e-01 0.0553 0.0801 0.436 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -474635 sc-eQTL 1.99e-03 0.157 0.05 0.436 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -166418 sc-eQTL 4.22e-01 0.0361 0.0449 0.436 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -317402 sc-eQTL 3.83e-01 -0.0802 0.0916 0.436 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -818209 sc-eQTL 1.97e-01 0.122 0.094 0.436 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -914870 sc-eQTL 7.34e-01 0.0263 0.0774 0.436 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -140337 sc-eQTL 3.68e-01 -0.0653 0.0723 0.436 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -705432 sc-eQTL 1.46e-02 0.187 0.0759 0.433 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 9.18e-01 -0.00867 0.0843 0.433 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -474635 sc-eQTL 4.72e-01 0.0496 0.069 0.433 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -166418 sc-eQTL 2.90e-01 0.0584 0.0551 0.433 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -317402 sc-eQTL 1.19e-01 -0.125 0.0802 0.433 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -818209 sc-eQTL 6.41e-01 0.0391 0.0836 0.433 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -914870 sc-eQTL 2.08e-01 0.0999 0.0791 0.433 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -140337 sc-eQTL 1.62e-01 -0.111 0.0791 0.433 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -705432 sc-eQTL 3.00e-01 0.0905 0.0871 0.438 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -705626 sc-eQTL 4.01e-01 0.0501 0.0596 0.438 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -474635 sc-eQTL 2.34e-01 0.0777 0.0652 0.438 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -166418 sc-eQTL 3.55e-01 -0.0675 0.0729 0.438 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -127148 sc-eQTL 7.85e-01 0.0231 0.0843 0.438 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -140337 sc-eQTL 3.56e-01 -0.0671 0.0726 0.438 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000284543 \N -914925 2.67e-07 1.3e-07 4.98e-08 1.82e-07 9.24e-08 9.91e-08 1.61e-07 5.43e-08 1.45e-07 5.67e-08 1.55e-07 1.01e-07 1.47e-07 7.13e-08 5.91e-08 7.49e-08 4.01e-08 1.33e-07 5.97e-08 4.31e-08 1.21e-07 1.24e-07 1.45e-07 3.03e-08 1.5e-07 1.26e-07 1.1e-07 9.61e-08 1.16e-07 1.07e-07 9.7e-08 3.68e-08 3.66e-08 8.23e-08 6.67e-08 3.2e-08 5.04e-08 8.71e-08 6.59e-08 3.71e-08 5.14e-08 1.35e-07 5.2e-08 1.91e-08 5.15e-08 1.84e-08 1.2e-07 3.78e-09 5.04e-08