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Genes within 1Mb (chr1:30576082:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -720706 sc-eQTL 7.95e-01 0.021 0.0807 0.596 B L1
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 8.57e-01 -0.0116 0.0646 0.596 B L1
ENSG00000134644 PUM1 -489909 sc-eQTL 2.99e-01 0.0563 0.0541 0.596 B L1
ENSG00000162510 MATN1 -147503 sc-eQTL 8.09e-01 -0.0138 0.057 0.596 B L1
ENSG00000162511 LAPTM5 -181692 sc-eQTL 4.34e-01 -0.035 0.0446 0.596 B L1
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 2.49e-01 -0.0602 0.0521 0.596 B L1
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.72e-01 -0.00217 0.0619 0.596 B L1
ENSG00000060688 SNRNP40 -720706 sc-eQTL 9.19e-01 -0.00709 0.0697 0.596 CD4T L1
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 4.69e-01 -0.0394 0.0544 0.596 CD4T L1
ENSG00000134644 PUM1 -489909 sc-eQTL 2.24e-01 0.0589 0.0483 0.596 CD4T L1
ENSG00000162511 LAPTM5 -181692 sc-eQTL 9.61e-01 0.00265 0.0537 0.596 CD4T L1
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 2.31e-01 -0.0576 0.0479 0.596 CD4T L1
ENSG00000287510 AL137857.1 -155611 sc-eQTL 6.80e-01 0.0237 0.0576 0.596 CD4T L1
ENSG00000060688 SNRNP40 -720706 sc-eQTL 4.80e-01 -0.0646 0.0912 0.596 CD8T L1
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 3.28e-01 -0.0594 0.0606 0.596 CD8T L1
ENSG00000134644 PUM1 -489909 sc-eQTL 5.43e-01 0.0326 0.0534 0.596 CD8T L1
ENSG00000162511 LAPTM5 -181692 sc-eQTL 1.89e-01 -0.0681 0.0517 0.596 CD8T L1
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 5.83e-02 -0.115 0.0604 0.596 CD8T L1
ENSG00000287510 AL137857.1 -155611 sc-eQTL 4.39e-01 -0.0592 0.0764 0.596 CD8T L1
ENSG00000060688 SNRNP40 -720706 sc-eQTL 3.68e-01 -0.073 0.0809 0.599 DC L1
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 2.85e-02 -0.209 0.0948 0.599 DC L1
ENSG00000134644 PUM1 -489909 sc-eQTL 7.76e-01 -0.0214 0.0751 0.599 DC L1
ENSG00000162511 LAPTM5 -181692 sc-eQTL 4.64e-01 0.0393 0.0536 0.599 DC L1
ENSG00000168528 SERINC2 -833483 sc-eQTL 6.90e-02 0.16 0.0877 0.599 DC L1
ENSG00000284543 LINC01226 -930144 sc-eQTL 5.40e-01 0.0359 0.0586 0.599 DC L1
ENSG00000287510 AL137857.1 -155611 sc-eQTL 4.29e-01 0.0672 0.0847 0.599 DC L1
ENSG00000060688 SNRNP40 -720706 sc-eQTL 8.07e-01 0.0155 0.0634 0.596 Mono L1
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 8.32e-01 0.0167 0.0786 0.596 Mono L1
ENSG00000134644 PUM1 -489909 sc-eQTL 1.78e-02 0.119 0.0497 0.596 Mono L1
ENSG00000162511 LAPTM5 -181692 sc-eQTL 1.27e-01 0.0706 0.0461 0.596 Mono L1
ENSG00000162512 SDC3 -332676 sc-eQTL 1.74e-01 -0.121 0.0887 0.596 Mono L1
ENSG00000168528 SERINC2 -833483 sc-eQTL 1.07e-01 0.154 0.095 0.596 Mono L1
ENSG00000284543 LINC01226 -930144 sc-eQTL 1.14e-01 0.133 0.0837 0.596 Mono L1
ENSG00000287510 AL137857.1 -155611 sc-eQTL 8.42e-01 -0.0147 0.0736 0.596 Mono L1
ENSG00000060688 SNRNP40 -720706 sc-eQTL 2.68e-02 0.197 0.0883 0.597 NK L1
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 3.26e-01 0.06 0.061 0.597 NK L1
ENSG00000134644 PUM1 -489909 sc-eQTL 3.55e-01 0.0593 0.064 0.597 NK L1
ENSG00000162511 LAPTM5 -181692 sc-eQTL 7.18e-01 -0.0267 0.0738 0.597 NK L1
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 4.30e-01 0.0655 0.0829 0.597 NK L1
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.92e-01 0.0008 0.0766 0.597 NK L1
ENSG00000060688 SNRNP40 -720706 sc-eQTL 4.53e-01 -0.0499 0.0664 0.596 Other_T L1
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 8.65e-01 -0.0121 0.0711 0.596 Other_T L1
ENSG00000134644 PUM1 -489909 sc-eQTL 9.20e-01 0.0064 0.0639 0.596 Other_T L1
ENSG00000162511 LAPTM5 -181692 sc-eQTL 8.30e-01 -0.0112 0.0524 0.596 Other_T L1
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 2.80e-01 -0.0926 0.0855 0.596 Other_T L1
ENSG00000287510 AL137857.1 -155611 sc-eQTL 6.15e-01 -0.045 0.0893 0.596 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -720706 sc-eQTL 3.54e-01 0.0995 0.107 0.589 B_Activated L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 4.07e-01 -0.0898 0.108 0.589 B_Activated L2
ENSG00000134644 PUM1 -489909 sc-eQTL 8.78e-01 -0.0155 0.101 0.589 B_Activated L2
ENSG00000162510 MATN1 -147503 sc-eQTL 9.66e-01 -0.00371 0.0879 0.589 B_Activated L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 5.09e-01 -0.0405 0.0612 0.589 B_Activated L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 2.49e-01 0.114 0.0986 0.589 B_Activated L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 1.77e-01 -0.118 0.0871 0.589 B_Activated L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 5.50e-01 -0.0595 0.0994 0.599 B_Intermediate L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 1.48e-01 0.12 0.0825 0.599 B_Intermediate L2
ENSG00000134644 PUM1 -489909 sc-eQTL 7.89e-01 0.021 0.0782 0.599 B_Intermediate L2
ENSG00000162510 MATN1 -147503 sc-eQTL 4.55e-01 -0.0608 0.0813 0.599 B_Intermediate L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 6.62e-01 0.0218 0.0499 0.599 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 3.93e-01 -0.06 0.07 0.599 B_Intermediate L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.95e-02 0.129 0.0779 0.599 B_Intermediate L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 7.26e-01 0.0337 0.0959 0.597 B_Memory L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 7.66e-01 0.0264 0.0884 0.597 B_Memory L2
ENSG00000134644 PUM1 -489909 sc-eQTL 1.32e-01 0.116 0.0765 0.597 B_Memory L2
ENSG00000162510 MATN1 -147503 sc-eQTL 4.81e-01 0.0519 0.0735 0.597 B_Memory L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 7.21e-01 0.0233 0.0652 0.597 B_Memory L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 8.89e-01 -0.0104 0.0747 0.597 B_Memory L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 8.59e-01 -0.0156 0.0874 0.597 B_Memory L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 6.48e-01 0.04 0.0875 0.596 B_Naive1 L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.55e-01 -0.0447 0.0755 0.596 B_Naive1 L2
ENSG00000134644 PUM1 -489909 sc-eQTL 8.85e-01 -0.00969 0.0667 0.596 B_Naive1 L2
ENSG00000162510 MATN1 -147503 sc-eQTL 6.96e-01 -0.0265 0.0676 0.596 B_Naive1 L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 4.20e-01 0.0364 0.0451 0.596 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 2.07e-01 -0.0749 0.0591 0.596 B_Naive1 L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.53e-01 0.0043 0.0733 0.596 B_Naive1 L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 3.01e-01 -0.0986 0.0951 0.597 B_Naive2 L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 4.49e-02 -0.157 0.0779 0.597 B_Naive2 L2
ENSG00000134644 PUM1 -489909 sc-eQTL 5.01e-01 0.0518 0.0769 0.597 B_Naive2 L2
ENSG00000162510 MATN1 -147503 sc-eQTL 4.75e-01 -0.0528 0.0738 0.597 B_Naive2 L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 5.50e-01 0.03 0.0502 0.597 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 2.12e-01 0.0911 0.0728 0.597 B_Naive2 L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 5.31e-01 0.0495 0.0789 0.597 B_Naive2 L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 9.38e-01 -0.00725 0.093 0.598 CD4_CTL L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 9.89e-01 -0.00128 0.0915 0.598 CD4_CTL L2
ENSG00000134644 PUM1 -489909 sc-eQTL 1.71e-01 0.123 0.0893 0.598 CD4_CTL L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 6.44e-01 -0.037 0.0799 0.598 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 9.58e-01 0.00465 0.0875 0.598 CD4_CTL L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 7.72e-02 0.136 0.0766 0.598 CD4_CTL L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 9.63e-01 0.00339 0.073 0.596 CD4_Naive L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 9.03e-01 -0.00786 0.0647 0.596 CD4_Naive L2
ENSG00000134644 PUM1 -489909 sc-eQTL 9.74e-01 -0.00165 0.0517 0.596 CD4_Naive L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 8.67e-01 -0.00926 0.0554 0.596 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 3.80e-02 -0.116 0.0556 0.596 CD4_Naive L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 5.92e-01 0.0346 0.0645 0.596 CD4_Naive L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 7.25e-01 -0.0322 0.0914 0.596 CD4_TCM L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 1.44e-01 -0.108 0.0733 0.596 CD4_TCM L2
ENSG00000134644 PUM1 -489909 sc-eQTL 1.40e-01 0.0961 0.0649 0.596 CD4_TCM L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 4.10e-01 0.0446 0.054 0.596 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 9.19e-01 0.00696 0.0687 0.596 CD4_TCM L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 5.69e-01 -0.0436 0.0764 0.596 CD4_TCM L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 7.21e-01 -0.0322 0.0899 0.596 CD4_TEM L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 3.79e-02 0.177 0.0849 0.596 CD4_TEM L2
ENSG00000134644 PUM1 -489909 sc-eQTL 3.34e-01 0.0689 0.0713 0.596 CD4_TEM L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 7.48e-01 -0.0233 0.0722 0.596 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 8.01e-01 0.0213 0.0845 0.596 CD4_TEM L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 2.22e-01 0.102 0.083 0.596 CD4_TEM L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 2.99e-01 -0.103 0.0993 0.596 CD8_CTL L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 9.52e-01 0.00459 0.0763 0.596 CD8_CTL L2
ENSG00000134644 PUM1 -489909 sc-eQTL 2.13e-01 0.0921 0.0738 0.596 CD8_CTL L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 1.62e-01 -0.115 0.0817 0.596 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 1.85e-01 -0.114 0.0859 0.596 CD8_CTL L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 4.98e-01 -0.055 0.081 0.596 CD8_CTL L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 4.92e-01 0.0617 0.0895 0.596 CD8_Naive L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 2.01e-01 -0.0987 0.077 0.596 CD8_Naive L2
ENSG00000134644 PUM1 -489909 sc-eQTL 4.35e-01 0.0486 0.0621 0.596 CD8_Naive L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 1.26e-01 0.091 0.0593 0.596 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 2.73e-01 -0.0816 0.0742 0.596 CD8_Naive L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 5.18e-01 0.0524 0.0809 0.596 CD8_Naive L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 6.55e-02 -0.184 0.0994 0.6 CD8_TCM L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.98e-01 -0.0485 0.0918 0.6 CD8_TCM L2
ENSG00000134644 PUM1 -489909 sc-eQTL 4.72e-01 -0.0622 0.0863 0.6 CD8_TCM L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 1.53e-01 -0.129 0.09 0.6 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 4.42e-01 -0.0644 0.0836 0.6 CD8_TCM L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 2.40e-01 -0.0993 0.0843 0.6 CD8_TCM L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 5.36e-01 0.0586 0.0945 0.6 CD8_TEM L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 9.23e-01 -0.00876 0.0907 0.6 CD8_TEM L2
ENSG00000134644 PUM1 -489909 sc-eQTL 3.11e-01 0.0939 0.0925 0.6 CD8_TEM L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 2.46e-01 -0.101 0.0869 0.6 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 6.48e-01 0.0413 0.0904 0.6 CD8_TEM L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 7.37e-01 -0.0276 0.0819 0.6 CD8_TEM L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 2.16e-01 -0.118 0.0953 0.597 MAIT L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 7.92e-01 0.0224 0.0847 0.597 MAIT L2
ENSG00000134644 PUM1 -489909 sc-eQTL 5.26e-01 -0.0515 0.0811 0.597 MAIT L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 2.83e-01 0.0823 0.0764 0.597 MAIT L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 4.03e-01 -0.0714 0.0852 0.597 MAIT L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 7.97e-01 -0.0227 0.0879 0.597 MAIT L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 2.87e-02 0.215 0.0977 0.604 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 9.71e-01 0.00299 0.0836 0.604 NK_CD56bright L2
ENSG00000134644 PUM1 -489909 sc-eQTL 9.82e-01 -0.00194 0.0878 0.604 NK_CD56bright L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 2.50e-01 0.0996 0.0863 0.604 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 3.98e-01 -0.0736 0.0868 0.604 NK_CD56bright L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 6.15e-01 0.0431 0.0857 0.604 NK_CD56bright L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 1.91e-01 0.123 0.0937 0.599 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 8.70e-01 0.0114 0.0696 0.599 NK_CD56dim L2
ENSG00000134644 PUM1 -489909 sc-eQTL 6.34e-01 0.034 0.0714 0.599 NK_CD56dim L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 5.23e-01 -0.0487 0.0761 0.599 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 7.94e-01 0.0249 0.0954 0.599 NK_CD56dim L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 7.60e-01 0.024 0.0787 0.599 NK_CD56dim L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 7.96e-01 0.0259 0.0997 0.598 NK_HLA L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 7.42e-01 0.0293 0.089 0.598 NK_HLA L2
ENSG00000134644 PUM1 -489909 sc-eQTL 5.27e-02 0.168 0.086 0.598 NK_HLA L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 8.30e-01 -0.0178 0.0828 0.598 NK_HLA L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 5.64e-01 0.0509 0.088 0.598 NK_HLA L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.98e-01 0.000191 0.0852 0.598 NK_HLA L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 3.38e-01 0.087 0.0907 0.599 NK_cytokine L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 2.78e-01 0.077 0.0707 0.599 NK_cytokine L2
ENSG00000134644 PUM1 -489909 sc-eQTL 7.55e-01 -0.024 0.0767 0.599 NK_cytokine L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 6.98e-01 -0.0327 0.0844 0.599 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 6.26e-01 0.0437 0.0894 0.599 NK_cytokine L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 7.45e-01 -0.0271 0.0832 0.599 NK_cytokine L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 5.36e-01 0.0707 0.114 0.619 PB L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.03e-02 -0.257 0.13 0.619 PB L2
ENSG00000134644 PUM1 -489909 sc-eQTL 6.88e-01 -0.0462 0.115 0.619 PB L2
ENSG00000162510 MATN1 -147503 sc-eQTL 8.96e-01 -0.014 0.107 0.619 PB L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 5.89e-01 0.0414 0.0763 0.619 PB L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 6.93e-01 0.0414 0.105 0.619 PB L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 4.05e-01 -0.0929 0.111 0.619 PB L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 6.44e-01 -0.033 0.0714 0.593 Pro_T L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 8.65e-01 0.0155 0.0907 0.593 Pro_T L2
ENSG00000134644 PUM1 -489909 sc-eQTL 5.54e-01 -0.0501 0.0845 0.593 Pro_T L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 7.91e-02 -0.106 0.0602 0.593 Pro_T L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 9.45e-02 -0.141 0.0842 0.593 Pro_T L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 3.64e-01 -0.0708 0.0778 0.593 Pro_T L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 1.52e-02 -0.225 0.0918 0.596 Treg L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.61e-01 -0.0524 0.09 0.596 Treg L2
ENSG00000134644 PUM1 -489909 sc-eQTL 6.26e-02 0.134 0.0715 0.596 Treg L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 8.83e-02 0.14 0.0819 0.596 Treg L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 8.54e-01 -0.0155 0.0841 0.596 Treg L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 5.24e-01 0.0535 0.0839 0.596 Treg L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 4.40e-01 -0.0742 0.0958 0.61 cDC L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.88e-01 -0.0564 0.104 0.61 cDC L2
ENSG00000134644 PUM1 -489909 sc-eQTL 3.70e-01 0.08 0.0891 0.61 cDC L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 6.62e-01 0.0274 0.0625 0.61 cDC L2
ENSG00000168528 SERINC2 -833483 sc-eQTL 1.35e-01 0.12 0.0798 0.61 cDC L2
ENSG00000284543 LINC01226 -930144 sc-eQTL 7.37e-01 -0.0265 0.0789 0.61 cDC L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.39e-01 0.00649 0.085 0.61 cDC L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 3.75e-01 0.0675 0.0759 0.596 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 9.50e-01 -0.00534 0.0848 0.596 cMono_IL1B L2
ENSG00000134644 PUM1 -489909 sc-eQTL 2.53e-02 0.128 0.0567 0.596 cMono_IL1B L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 3.45e-01 0.0476 0.0503 0.596 cMono_IL1B L2
ENSG00000162512 SDC3 -332676 sc-eQTL 6.75e-02 -0.173 0.0942 0.596 cMono_IL1B L2
ENSG00000168528 SERINC2 -833483 sc-eQTL 8.83e-02 0.163 0.0954 0.596 cMono_IL1B L2
ENSG00000284543 LINC01226 -930144 sc-eQTL 5.71e-01 0.0482 0.0849 0.596 cMono_IL1B L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.86e-01 0.00136 0.0792 0.596 cMono_IL1B L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 9.29e-01 0.00712 0.0794 0.596 cMono_S100A L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 4.80e-01 0.0662 0.0937 0.596 cMono_S100A L2
ENSG00000134644 PUM1 -489909 sc-eQTL 2.63e-01 0.0758 0.0676 0.596 cMono_S100A L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 5.07e-01 0.0346 0.052 0.596 cMono_S100A L2
ENSG00000162512 SDC3 -332676 sc-eQTL 5.76e-01 -0.0503 0.0899 0.596 cMono_S100A L2
ENSG00000168528 SERINC2 -833483 sc-eQTL 2.50e-02 0.212 0.0941 0.596 cMono_S100A L2
ENSG00000284543 LINC01226 -930144 sc-eQTL 6.14e-02 0.144 0.0767 0.596 cMono_S100A L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 6.59e-01 -0.0343 0.0777 0.596 cMono_S100A L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 5.96e-01 0.0604 0.114 0.597 gdT L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 1.56e-01 0.138 0.097 0.597 gdT L2
ENSG00000134644 PUM1 -489909 sc-eQTL 1.62e-01 0.141 0.1 0.597 gdT L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 9.76e-01 -0.00328 0.109 0.597 gdT L2
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 7.02e-01 -0.0387 0.101 0.597 gdT L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 1.52e-01 -0.14 0.0971 0.597 gdT L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 6.09e-01 0.0456 0.0891 0.596 intMono L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.11e-01 -0.0631 0.0957 0.596 intMono L2
ENSG00000134644 PUM1 -489909 sc-eQTL 6.06e-01 -0.042 0.0812 0.596 intMono L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 7.54e-01 0.02 0.0638 0.596 intMono L2
ENSG00000162512 SDC3 -332676 sc-eQTL 3.71e-01 -0.0782 0.0871 0.596 intMono L2
ENSG00000168528 SERINC2 -833483 sc-eQTL 9.42e-01 0.00662 0.0914 0.596 intMono L2
ENSG00000284543 LINC01226 -930144 sc-eQTL 9.21e-01 0.00861 0.0866 0.596 intMono L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 1.35e-01 -0.129 0.0862 0.596 intMono L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 8.27e-01 -0.0183 0.0837 0.606 ncMono L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 8.06e-01 -0.022 0.0892 0.606 ncMono L2
ENSG00000134644 PUM1 -489909 sc-eQTL 5.22e-01 0.0467 0.0729 0.606 ncMono L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 4.33e-01 0.052 0.0661 0.606 ncMono L2
ENSG00000162512 SDC3 -332676 sc-eQTL 3.61e-01 -0.0679 0.0741 0.606 ncMono L2
ENSG00000168528 SERINC2 -833483 sc-eQTL 8.33e-01 -0.0172 0.081 0.606 ncMono L2
ENSG00000284543 LINC01226 -930144 sc-eQTL 6.06e-01 0.0418 0.0809 0.606 ncMono L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 8.78e-01 0.0129 0.0839 0.606 ncMono L2
ENSG00000060688 SNRNP40 -720706 sc-eQTL 5.28e-01 -0.061 0.0965 0.607 pDC L2
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.42e-01 -0.0647 0.106 0.607 pDC L2
ENSG00000134644 PUM1 -489909 sc-eQTL 2.32e-01 0.105 0.0875 0.607 pDC L2
ENSG00000162511 LAPTM5 -181692 sc-eQTL 9.26e-01 0.00764 0.0817 0.607 pDC L2
ENSG00000168528 SERINC2 -833483 sc-eQTL 2.06e-01 0.125 0.0986 0.607 pDC L2
ENSG00000284543 LINC01226 -930144 sc-eQTL 6.81e-01 -0.0317 0.0769 0.607 pDC L2
ENSG00000287510 AL137857.1 -155611 sc-eQTL 3.52e-01 -0.0843 0.0902 0.607 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -720706 sc-eQTL 5.37e-01 0.0584 0.0943 0.596 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 4.20e-01 0.0634 0.0785 0.596 B_Memory LOneK1K
ENSG00000134644 PUM1 -489909 sc-eQTL 1.67e-01 0.0961 0.0693 0.596 B_Memory LOneK1K
ENSG00000162510 MATN1 -147503 sc-eQTL 7.28e-01 -0.0277 0.0794 0.596 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -181692 sc-eQTL 9.59e-01 0.00256 0.0499 0.596 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 6.27e-01 -0.0321 0.066 0.596 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -155611 sc-eQTL 6.27e-01 0.035 0.0719 0.596 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -720706 sc-eQTL 9.28e-01 -0.00772 0.0857 0.596 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 1.70e-01 -0.0929 0.0674 0.596 B_Naive LOneK1K
ENSG00000134644 PUM1 -489909 sc-eQTL 3.08e-01 0.0654 0.0639 0.596 B_Naive LOneK1K
ENSG00000162510 MATN1 -147503 sc-eQTL 5.69e-01 -0.0351 0.0616 0.596 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -181692 sc-eQTL 2.37e-01 0.0513 0.0433 0.596 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 3.22e-01 -0.0556 0.056 0.596 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -155611 sc-eQTL 7.38e-01 0.0223 0.0666 0.596 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -720706 sc-eQTL 9.28e-01 0.00658 0.0726 0.596 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 5.53e-01 0.0488 0.0821 0.596 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -489909 sc-eQTL 3.22e-02 0.112 0.0519 0.596 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -181692 sc-eQTL 1.71e-01 0.0631 0.0459 0.596 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -332676 sc-eQTL 1.38e-01 -0.139 0.0935 0.596 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -833483 sc-eQTL 7.53e-02 0.172 0.096 0.596 CD14_Mono LOneK1K
ENSG00000284543 LINC01226 -930144 sc-eQTL 2.02e-01 0.101 0.079 0.596 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.12e-01 0.00825 0.0742 0.596 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -720706 sc-eQTL 5.81e-01 0.0435 0.0787 0.595 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 1.87e-01 -0.114 0.0858 0.595 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -489909 sc-eQTL 6.98e-01 0.0274 0.0706 0.595 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -181692 sc-eQTL 4.86e-01 0.0394 0.0564 0.595 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -332676 sc-eQTL 2.02e-01 -0.105 0.0822 0.595 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -833483 sc-eQTL 9.62e-01 -0.00403 0.0856 0.595 CD16_Mono LOneK1K
ENSG00000284543 LINC01226 -930144 sc-eQTL 5.26e-01 0.0515 0.0811 0.595 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -155611 sc-eQTL 2.68e-01 -0.0901 0.0811 0.595 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -720706 sc-eQTL 9.21e-02 0.151 0.0891 0.599 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -720900 sc-eQTL 1.99e-01 0.0786 0.061 0.599 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -489909 sc-eQTL 2.76e-01 0.0731 0.0669 0.599 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -181692 sc-eQTL 4.98e-01 -0.0509 0.0749 0.599 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -142422 sc-eQTL 3.73e-01 0.0771 0.0864 0.599 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -155611 sc-eQTL 9.93e-01 -0.000694 0.0747 0.599 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000284543 \N -930199 2.74e-07 1.25e-07 4.69e-08 1.8e-07 9.25e-08 9.8e-08 1.49e-07 5.4e-08 1.45e-07 4.94e-08 1.62e-07 8.55e-08 1.41e-07 6.56e-08 6.17e-08 7.53e-08 3.93e-08 1.26e-07 5.82e-08 4.04e-08 1.13e-07 1.28e-07 1.39e-07 3.49e-08 1.4e-07 1.14e-07 1.07e-07 9.57e-08 1.09e-07 1.02e-07 9.64e-08 3.64e-08 3.56e-08 8.44e-08 7.66e-08 3.6e-08 5.03e-08 9.23e-08 6.55e-08 3.98e-08 4.88e-08 1.35e-07 5.22e-08 1.38e-08 4.92e-08 1.84e-08 1.22e-07 3.81e-09 4.9e-08