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Genes within 1Mb (chr1:30528252:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -768536 sc-eQTL 8.35e-01 -0.0452 0.217 0.054 B_Activated L2
ENSG00000121766 ZCCHC17 -768730 sc-eQTL 1.39e-01 0.323 0.218 0.054 B_Activated L2
ENSG00000134644 PUM1 -537739 sc-eQTL 2.59e-01 0.23 0.203 0.054 B_Activated L2
ENSG00000162510 MATN1 -195333 sc-eQTL 7.39e-01 -0.0593 0.178 0.054 B_Activated L2
ENSG00000162511 LAPTM5 -229522 sc-eQTL 1.56e-01 -0.176 0.123 0.054 B_Activated L2
ENSG00000186056 MATN1-AS1 -190252 sc-eQTL 7.38e-01 -0.0671 0.2 0.054 B_Activated L2
ENSG00000287510 AL137857.1 -203441 sc-eQTL 7.05e-01 -0.0672 0.177 0.054 B_Activated L2
ENSG00000060688 SNRNP40 -768536 sc-eQTL 1.50e-01 -0.295 0.204 0.05 CD8_TEM L2
ENSG00000121766 ZCCHC17 -768730 sc-eQTL 3.93e-01 0.168 0.197 0.05 CD8_TEM L2
ENSG00000134644 PUM1 -537739 sc-eQTL 8.41e-01 -0.0404 0.201 0.05 CD8_TEM L2
ENSG00000162511 LAPTM5 -229522 sc-eQTL 2.37e-01 0.224 0.189 0.05 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -190252 sc-eQTL 9.78e-01 -0.00545 0.197 0.05 CD8_TEM L2
ENSG00000287510 AL137857.1 -203441 sc-eQTL 8.42e-02 -0.306 0.177 0.05 CD8_TEM L2
ENSG00000060688 SNRNP40 -768536 sc-eQTL 7.99e-01 0.0556 0.218 0.05 NK_HLA L2
ENSG00000121766 ZCCHC17 -768730 sc-eQTL 7.42e-01 0.0641 0.195 0.05 NK_HLA L2
ENSG00000134644 PUM1 -537739 sc-eQTL 9.66e-01 0.00812 0.19 0.05 NK_HLA L2
ENSG00000162511 LAPTM5 -229522 sc-eQTL 3.79e-01 -0.16 0.181 0.05 NK_HLA L2
ENSG00000186056 MATN1-AS1 -190252 sc-eQTL 9.13e-01 0.021 0.193 0.05 NK_HLA L2
ENSG00000287510 AL137857.1 -203441 sc-eQTL 3.29e-01 -0.182 0.186 0.05 NK_HLA L2
ENSG00000060688 SNRNP40 -768536 sc-eQTL 2.00e-01 0.292 0.227 0.052 PB L2
ENSG00000121766 ZCCHC17 -768730 sc-eQTL 8.61e-01 0.0464 0.265 0.052 PB L2
ENSG00000134644 PUM1 -537739 sc-eQTL 5.25e-01 0.147 0.23 0.052 PB L2
ENSG00000162510 MATN1 -195333 sc-eQTL 7.25e-01 0.0758 0.215 0.052 PB L2
ENSG00000162511 LAPTM5 -229522 sc-eQTL 9.68e-02 -0.254 0.151 0.052 PB L2
ENSG00000186056 MATN1-AS1 -190252 sc-eQTL 2.36e-01 0.248 0.209 0.052 PB L2
ENSG00000287510 AL137857.1 -203441 sc-eQTL 7.08e-01 0.0839 0.223 0.052 PB L2
ENSG00000060688 SNRNP40 -768536 sc-eQTL 3.26e-01 -0.155 0.157 0.05 Pro_T L2
ENSG00000121766 ZCCHC17 -768730 sc-eQTL 6.73e-01 -0.0845 0.2 0.05 Pro_T L2
ENSG00000134644 PUM1 -537739 sc-eQTL 2.09e-01 -0.234 0.186 0.05 Pro_T L2
ENSG00000162511 LAPTM5 -229522 sc-eQTL 1.28e-01 0.204 0.133 0.05 Pro_T L2
ENSG00000186056 MATN1-AS1 -190252 sc-eQTL 2.74e-01 0.204 0.187 0.05 Pro_T L2
ENSG00000287510 AL137857.1 -203441 sc-eQTL 2.58e-01 0.195 0.172 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 \N -768730 2.8e-07 1.33e-07 5.03e-08 2.27e-07 9.24e-08 8.33e-08 1.73e-07 5.43e-08 1.47e-07 6.08e-08 1.59e-07 1.08e-07 1.79e-07 8.13e-08 5.98e-08 7.49e-08 4.01e-08 1.44e-07 6.32e-08 4.89e-08 1.13e-07 1.26e-07 1.45e-07 2.79e-08 1.98e-07 1.21e-07 1.13e-07 9.74e-08 1.23e-07 9.88e-08 1.07e-07 3.93e-08 3.35e-08 9.52e-08 3.52e-08 3.28e-08 5.3e-08 9.3e-08 6.59e-08 3.75e-08 4.88e-08 1.48e-07 5.08e-08 7.37e-09 4.92e-08 1.87e-08 1.19e-07 3.8e-09 4.94e-08