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Genes within 1Mb (chr1:30500508:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -796280 sc-eQTL 3.45e-01 -0.0761 0.0805 0.41 B L1
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 4.75e-01 -0.0462 0.0645 0.41 B L1
ENSG00000134644 PUM1 -565483 sc-eQTL 3.47e-01 0.051 0.0541 0.41 B L1
ENSG00000162510 MATN1 -223077 sc-eQTL 8.06e-01 0.014 0.0569 0.41 B L1
ENSG00000162511 LAPTM5 -257266 sc-eQTL 6.35e-01 0.0212 0.0446 0.41 B L1
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 3.11e-02 0.112 0.0517 0.41 B L1
ENSG00000287510 AL137857.1 -231185 sc-eQTL 3.64e-01 0.0561 0.0617 0.41 B L1
ENSG00000060688 SNRNP40 -796280 sc-eQTL 5.18e-01 -0.0456 0.0704 0.41 CD4T L1
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 5.87e-01 -0.0299 0.055 0.41 CD4T L1
ENSG00000134644 PUM1 -565483 sc-eQTL 3.78e-01 -0.0432 0.0489 0.41 CD4T L1
ENSG00000162511 LAPTM5 -257266 sc-eQTL 8.21e-01 -0.0123 0.0543 0.41 CD4T L1
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 1.88e-01 0.0638 0.0484 0.41 CD4T L1
ENSG00000287510 AL137857.1 -231185 sc-eQTL 2.84e-01 -0.0623 0.058 0.41 CD4T L1
ENSG00000060688 SNRNP40 -796280 sc-eQTL 2.92e-01 0.0963 0.0912 0.41 CD8T L1
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 8.63e-01 0.0105 0.0608 0.41 CD8T L1
ENSG00000134644 PUM1 -565483 sc-eQTL 6.58e-01 -0.0237 0.0535 0.41 CD8T L1
ENSG00000162511 LAPTM5 -257266 sc-eQTL 2.79e-01 -0.0562 0.0519 0.41 CD8T L1
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 2.23e-01 0.0742 0.0607 0.41 CD8T L1
ENSG00000287510 AL137857.1 -231185 sc-eQTL 3.23e-01 0.0757 0.0764 0.41 CD8T L1
ENSG00000060688 SNRNP40 -796280 sc-eQTL 6.79e-02 0.147 0.0802 0.403 DC L1
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 6.16e-01 0.0481 0.0958 0.403 DC L1
ENSG00000134644 PUM1 -565483 sc-eQTL 7.50e-01 -0.024 0.075 0.403 DC L1
ENSG00000162511 LAPTM5 -257266 sc-eQTL 6.56e-01 -0.0239 0.0536 0.403 DC L1
ENSG00000168528 SERINC2 -909057 sc-eQTL 1.94e-01 -0.115 0.088 0.403 DC L1
ENSG00000287510 AL137857.1 -231185 sc-eQTL 8.94e-01 -0.0113 0.0848 0.403 DC L1
ENSG00000060688 SNRNP40 -796280 sc-eQTL 6.24e-01 0.0314 0.064 0.41 Mono L1
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 7.49e-02 -0.141 0.0788 0.41 Mono L1
ENSG00000134644 PUM1 -565483 sc-eQTL 8.33e-01 0.0107 0.0509 0.41 Mono L1
ENSG00000162511 LAPTM5 -257266 sc-eQTL 9.20e-01 -0.00472 0.0468 0.41 Mono L1
ENSG00000162512 SDC3 -408250 sc-eQTL 8.42e-01 0.0179 0.09 0.41 Mono L1
ENSG00000168528 SERINC2 -909057 sc-eQTL 6.58e-02 0.177 0.0958 0.41 Mono L1
ENSG00000287510 AL137857.1 -231185 sc-eQTL 3.53e-01 0.069 0.0742 0.41 Mono L1
ENSG00000060688 SNRNP40 -796280 sc-eQTL 4.76e-01 0.0625 0.0877 0.41 NK L1
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 3.04e-01 0.0618 0.0599 0.41 NK L1
ENSG00000134644 PUM1 -565483 sc-eQTL 9.72e-01 -0.0022 0.063 0.41 NK L1
ENSG00000162511 LAPTM5 -257266 sc-eQTL 3.58e-01 0.0666 0.0724 0.41 NK L1
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 6.43e-01 -0.0379 0.0815 0.41 NK L1
ENSG00000287510 AL137857.1 -231185 sc-eQTL 3.79e-01 0.0662 0.0751 0.41 NK L1
ENSG00000060688 SNRNP40 -796280 sc-eQTL 4.10e-01 -0.0551 0.0668 0.41 Other_T L1
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 1.71e-01 -0.0978 0.0711 0.41 Other_T L1
ENSG00000134644 PUM1 -565483 sc-eQTL 3.73e-01 -0.0573 0.0641 0.41 Other_T L1
ENSG00000162511 LAPTM5 -257266 sc-eQTL 9.75e-01 0.00163 0.0527 0.41 Other_T L1
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 8.42e-01 -0.0172 0.0862 0.41 Other_T L1
ENSG00000287510 AL137857.1 -231185 sc-eQTL 1.16e-01 0.141 0.0893 0.41 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -796280 sc-eQTL 4.61e-01 0.0761 0.103 0.418 B_Activated L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 6.40e-01 0.0488 0.104 0.418 B_Activated L2
ENSG00000134644 PUM1 -565483 sc-eQTL 4.13e-01 0.0794 0.0966 0.418 B_Activated L2
ENSG00000162510 MATN1 -223077 sc-eQTL 3.80e-01 -0.0744 0.0844 0.418 B_Activated L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 7.31e-01 0.0203 0.059 0.418 B_Activated L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 8.09e-01 -0.023 0.0953 0.418 B_Activated L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 6.27e-01 0.041 0.0842 0.418 B_Activated L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 6.13e-01 -0.0497 0.098 0.41 B_Intermediate L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 3.77e-02 0.169 0.0809 0.41 B_Intermediate L2
ENSG00000134644 PUM1 -565483 sc-eQTL 5.65e-01 0.0444 0.077 0.41 B_Intermediate L2
ENSG00000162510 MATN1 -223077 sc-eQTL 7.40e-01 0.0267 0.0802 0.41 B_Intermediate L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 6.64e-01 0.0214 0.0492 0.41 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 8.04e-01 0.0172 0.0691 0.41 B_Intermediate L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 8.86e-01 0.0111 0.0773 0.41 B_Intermediate L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 5.72e-01 0.0532 0.094 0.409 B_Memory L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 1.19e-01 -0.135 0.0862 0.409 B_Memory L2
ENSG00000134644 PUM1 -565483 sc-eQTL 9.43e-01 0.00543 0.0754 0.409 B_Memory L2
ENSG00000162510 MATN1 -223077 sc-eQTL 6.42e-01 -0.0336 0.0721 0.409 B_Memory L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 6.46e-01 -0.0294 0.0639 0.409 B_Memory L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 7.83e-01 0.0202 0.0732 0.409 B_Memory L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 7.36e-01 0.029 0.0857 0.409 B_Memory L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 7.39e-01 -0.0294 0.0881 0.41 B_Naive1 L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 3.82e-01 0.0665 0.0759 0.41 B_Naive1 L2
ENSG00000134644 PUM1 -565483 sc-eQTL 3.11e-01 0.068 0.0669 0.41 B_Naive1 L2
ENSG00000162510 MATN1 -223077 sc-eQTL 6.61e-01 0.0299 0.0681 0.41 B_Naive1 L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 8.03e-01 0.0114 0.0455 0.41 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 3.91e-02 0.123 0.0591 0.41 B_Naive1 L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 5.34e-01 0.046 0.0737 0.41 B_Naive1 L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 1.09e-01 -0.148 0.0917 0.41 B_Naive2 L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 8.59e-01 0.0135 0.0762 0.41 B_Naive2 L2
ENSG00000134644 PUM1 -565483 sc-eQTL 9.63e-01 0.00342 0.0745 0.41 B_Naive2 L2
ENSG00000162510 MATN1 -223077 sc-eQTL 6.83e-01 -0.0293 0.0715 0.41 B_Naive2 L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 7.72e-01 -0.0141 0.0486 0.41 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 7.86e-01 0.0192 0.0707 0.41 B_Naive2 L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 5.49e-01 0.0458 0.0764 0.41 B_Naive2 L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 1.95e-01 -0.119 0.0914 0.407 CD4_CTL L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 5.97e-01 -0.0477 0.0902 0.407 CD4_CTL L2
ENSG00000134644 PUM1 -565483 sc-eQTL 1.19e-01 -0.138 0.088 0.407 CD4_CTL L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 4.54e-01 -0.0592 0.0788 0.407 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 2.24e-01 -0.105 0.086 0.407 CD4_CTL L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 9.55e-01 -0.00429 0.0762 0.407 CD4_CTL L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 5.91e-01 -0.0396 0.0736 0.41 CD4_Naive L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 9.09e-01 0.00748 0.0653 0.41 CD4_Naive L2
ENSG00000134644 PUM1 -565483 sc-eQTL 6.38e-01 -0.0245 0.0521 0.41 CD4_Naive L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 9.88e-01 -0.000861 0.0558 0.41 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 3.49e-01 0.0531 0.0565 0.41 CD4_Naive L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 1.86e-01 -0.0861 0.0648 0.41 CD4_Naive L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 9.91e-01 -0.00105 0.0923 0.41 CD4_TCM L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 7.98e-01 -0.0191 0.0744 0.41 CD4_TCM L2
ENSG00000134644 PUM1 -565483 sc-eQTL 4.82e-01 -0.0463 0.0658 0.41 CD4_TCM L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 4.51e-01 -0.0412 0.0546 0.41 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 2.58e-01 0.0785 0.0691 0.41 CD4_TCM L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 6.92e-01 0.0307 0.0772 0.41 CD4_TCM L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 4.03e-01 -0.0776 0.0925 0.41 CD4_TEM L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 5.59e-01 -0.0516 0.0883 0.41 CD4_TEM L2
ENSG00000134644 PUM1 -565483 sc-eQTL 4.60e-01 0.0543 0.0735 0.41 CD4_TEM L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 8.54e-02 -0.128 0.0739 0.41 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 2.48e-01 0.1 0.0868 0.41 CD4_TEM L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 7.97e-01 -0.0221 0.0858 0.41 CD4_TEM L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 9.15e-01 0.0106 0.0987 0.41 CD8_CTL L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 1.22e-01 0.117 0.0753 0.41 CD8_CTL L2
ENSG00000134644 PUM1 -565483 sc-eQTL 8.05e-01 0.0182 0.0735 0.41 CD8_CTL L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 5.00e-01 -0.0549 0.0813 0.41 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 3.61e-01 0.0782 0.0854 0.41 CD8_CTL L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 2.81e-01 0.0867 0.0803 0.41 CD8_CTL L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 7.74e-01 0.0263 0.0915 0.41 CD8_Naive L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 5.54e-01 -0.0467 0.0788 0.41 CD8_Naive L2
ENSG00000134644 PUM1 -565483 sc-eQTL 2.47e-01 -0.0734 0.0633 0.41 CD8_Naive L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 2.33e-01 -0.0726 0.0606 0.41 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 5.82e-01 0.0418 0.0759 0.41 CD8_Naive L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 6.66e-01 0.0357 0.0826 0.41 CD8_Naive L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 9.11e-01 0.0113 0.101 0.414 CD8_TCM L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 7.45e-01 0.0302 0.0927 0.414 CD8_TCM L2
ENSG00000134644 PUM1 -565483 sc-eQTL 7.71e-01 0.0254 0.0871 0.414 CD8_TCM L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 2.52e-01 0.104 0.0909 0.414 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 2.80e-01 0.0912 0.0842 0.414 CD8_TCM L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 1.91e-01 -0.111 0.085 0.414 CD8_TCM L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 4.47e-01 0.073 0.0958 0.413 CD8_TEM L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 9.77e-01 -0.00267 0.092 0.413 CD8_TEM L2
ENSG00000134644 PUM1 -565483 sc-eQTL 8.56e-01 0.0171 0.0941 0.413 CD8_TEM L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 7.57e-01 -0.0275 0.0884 0.413 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 3.26e-01 0.0902 0.0916 0.413 CD8_TEM L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 8.68e-03 0.216 0.0816 0.413 CD8_TEM L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 8.08e-01 0.0239 0.0983 0.409 MAIT L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 4.17e-01 -0.0707 0.0869 0.409 MAIT L2
ENSG00000134644 PUM1 -565483 sc-eQTL 6.88e-01 0.0336 0.0834 0.409 MAIT L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 7.67e-01 -0.0234 0.0787 0.409 MAIT L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 1.47e-01 -0.127 0.0872 0.409 MAIT L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 3.08e-01 0.0921 0.0901 0.409 MAIT L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 2.59e-01 -0.109 0.0964 0.411 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 7.71e-01 0.0239 0.0817 0.411 NK_CD56bright L2
ENSG00000134644 PUM1 -565483 sc-eQTL 9.31e-01 -0.00746 0.0858 0.411 NK_CD56bright L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 1.92e-01 0.11 0.0843 0.411 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 1.21e-01 0.132 0.0846 0.411 NK_CD56bright L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 3.22e-02 0.179 0.0829 0.411 NK_CD56bright L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 2.58e-01 0.105 0.0922 0.409 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 2.74e-01 0.0747 0.0682 0.409 NK_CD56dim L2
ENSG00000134644 PUM1 -565483 sc-eQTL 7.30e-01 -0.0242 0.0702 0.409 NK_CD56dim L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 3.02e-01 0.0773 0.0746 0.409 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 3.57e-01 -0.0864 0.0936 0.409 NK_CD56dim L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 8.86e-01 0.0111 0.0773 0.409 NK_CD56dim L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 8.08e-01 -0.0233 0.0958 0.411 NK_HLA L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 1.95e-02 0.199 0.0843 0.411 NK_HLA L2
ENSG00000134644 PUM1 -565483 sc-eQTL 8.45e-01 0.0164 0.0833 0.411 NK_HLA L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 2.45e-01 0.0925 0.0793 0.411 NK_HLA L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 6.38e-01 -0.0398 0.0846 0.411 NK_HLA L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 8.75e-01 0.0129 0.0818 0.411 NK_HLA L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 8.20e-01 -0.0206 0.0905 0.409 NK_cytokine L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 4.79e-01 -0.05 0.0705 0.409 NK_cytokine L2
ENSG00000134644 PUM1 -565483 sc-eQTL 3.43e-01 0.0725 0.0762 0.409 NK_cytokine L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 4.30e-01 0.0664 0.0839 0.409 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 4.65e-01 0.0652 0.089 0.409 NK_cytokine L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 2.37e-01 0.098 0.0826 0.409 NK_cytokine L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 6.00e-01 0.0555 0.106 0.381 PB L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 3.82e-01 -0.107 0.122 0.381 PB L2
ENSG00000134644 PUM1 -565483 sc-eQTL 6.46e-01 -0.049 0.107 0.381 PB L2
ENSG00000162510 MATN1 -223077 sc-eQTL 6.53e-01 -0.0447 0.0993 0.381 PB L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 1.96e-01 -0.0917 0.0705 0.381 PB L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 3.93e-01 -0.0831 0.0969 0.381 PB L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 3.00e-01 -0.107 0.103 0.381 PB L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 6.60e-01 -0.0315 0.0716 0.413 Pro_T L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 9.69e-01 -0.00352 0.0909 0.413 Pro_T L2
ENSG00000134644 PUM1 -565483 sc-eQTL 4.06e-01 0.0705 0.0847 0.413 Pro_T L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 4.64e-01 0.0445 0.0608 0.413 Pro_T L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 7.66e-01 0.0253 0.085 0.413 Pro_T L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 1.30e-01 0.118 0.0778 0.413 Pro_T L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 1.63e-02 0.225 0.0927 0.41 Treg L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 5.50e-01 0.0544 0.0909 0.41 Treg L2
ENSG00000134644 PUM1 -565483 sc-eQTL 9.26e-01 -0.00676 0.0728 0.41 Treg L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 8.44e-01 -0.0164 0.0833 0.41 Treg L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 1.83e-02 -0.199 0.0838 0.41 Treg L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 2.53e-01 0.0969 0.0845 0.41 Treg L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 4.02e-01 0.0794 0.0947 0.398 cDC L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 4.29e-01 -0.0812 0.103 0.398 cDC L2
ENSG00000134644 PUM1 -565483 sc-eQTL 6.28e-01 0.0428 0.0881 0.398 cDC L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 6.68e-01 0.0266 0.0618 0.398 cDC L2
ENSG00000168528 SERINC2 -909057 sc-eQTL 5.77e-01 -0.0443 0.0793 0.398 cDC L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 2.09e-01 -0.105 0.0836 0.398 cDC L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 8.61e-01 -0.0136 0.0771 0.41 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 1.39e-02 -0.21 0.0848 0.41 cMono_IL1B L2
ENSG00000134644 PUM1 -565483 sc-eQTL 5.95e-01 0.031 0.0582 0.41 cMono_IL1B L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 5.79e-01 0.0284 0.0511 0.41 cMono_IL1B L2
ENSG00000162512 SDC3 -408250 sc-eQTL 5.20e-01 0.062 0.0962 0.41 cMono_IL1B L2
ENSG00000168528 SERINC2 -909057 sc-eQTL 1.77e-02 0.23 0.0962 0.41 cMono_IL1B L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 7.32e-01 -0.0276 0.0803 0.41 cMono_IL1B L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 9.44e-01 0.00572 0.081 0.41 cMono_S100A L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 1.68e-01 -0.132 0.0952 0.41 cMono_S100A L2
ENSG00000134644 PUM1 -565483 sc-eQTL 4.07e-01 -0.0573 0.069 0.41 cMono_S100A L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 9.07e-01 0.00621 0.0531 0.41 cMono_S100A L2
ENSG00000162512 SDC3 -408250 sc-eQTL 9.04e-01 -0.0111 0.0918 0.41 cMono_S100A L2
ENSG00000168528 SERINC2 -909057 sc-eQTL 2.58e-01 0.11 0.0969 0.41 cMono_S100A L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 5.17e-01 0.0513 0.0792 0.41 cMono_S100A L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 6.42e-01 -0.0545 0.117 0.427 gdT L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 9.48e-01 -0.00663 0.1 0.427 gdT L2
ENSG00000134644 PUM1 -565483 sc-eQTL 4.80e-02 -0.204 0.102 0.427 gdT L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 5.03e-01 -0.0755 0.112 0.427 gdT L2
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 7.23e-01 0.0369 0.104 0.427 gdT L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 6.36e-01 0.0478 0.101 0.427 gdT L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 8.05e-01 -0.0219 0.0886 0.413 intMono L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 1.42e-01 0.14 0.0948 0.413 intMono L2
ENSG00000134644 PUM1 -565483 sc-eQTL 2.05e-02 0.186 0.0798 0.413 intMono L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 5.16e-01 0.0412 0.0633 0.413 intMono L2
ENSG00000162512 SDC3 -408250 sc-eQTL 7.96e-01 0.0225 0.0868 0.413 intMono L2
ENSG00000168528 SERINC2 -909057 sc-eQTL 3.17e-01 0.091 0.0907 0.413 intMono L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 5.06e-01 -0.0573 0.0861 0.413 intMono L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 4.56e-01 0.0621 0.0832 0.407 ncMono L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 3.96e-01 0.0754 0.0887 0.407 ncMono L2
ENSG00000134644 PUM1 -565483 sc-eQTL 2.93e-01 0.0764 0.0724 0.407 ncMono L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 4.14e-01 -0.0539 0.0658 0.407 ncMono L2
ENSG00000162512 SDC3 -408250 sc-eQTL 7.06e-01 0.0279 0.0739 0.407 ncMono L2
ENSG00000168528 SERINC2 -909057 sc-eQTL 4.83e-01 0.0566 0.0806 0.407 ncMono L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 1.23e-01 0.129 0.083 0.407 ncMono L2
ENSG00000060688 SNRNP40 -796280 sc-eQTL 2.94e-01 0.0976 0.0926 0.407 pDC L2
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 4.14e-01 -0.0833 0.102 0.407 pDC L2
ENSG00000134644 PUM1 -565483 sc-eQTL 2.13e-01 -0.105 0.0841 0.407 pDC L2
ENSG00000162511 LAPTM5 -257266 sc-eQTL 7.52e-01 -0.0249 0.0786 0.407 pDC L2
ENSG00000168528 SERINC2 -909057 sc-eQTL 4.83e-01 -0.0669 0.0952 0.407 pDC L2
ENSG00000287510 AL137857.1 -231185 sc-eQTL 6.84e-02 0.158 0.0861 0.407 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -796280 sc-eQTL 7.90e-01 -0.0248 0.0932 0.41 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 9.00e-01 0.00974 0.0776 0.41 B_Memory LOneK1K
ENSG00000134644 PUM1 -565483 sc-eQTL 4.67e-01 0.0501 0.0687 0.41 B_Memory LOneK1K
ENSG00000162510 MATN1 -223077 sc-eQTL 9.93e-01 0.000669 0.0784 0.41 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -257266 sc-eQTL 9.69e-01 -0.00194 0.0493 0.41 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 8.07e-01 0.0159 0.0651 0.41 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -231185 sc-eQTL 8.74e-01 0.0112 0.071 0.41 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -796280 sc-eQTL 3.53e-01 -0.0792 0.0851 0.41 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 7.19e-01 0.0243 0.0674 0.41 B_Naive LOneK1K
ENSG00000134644 PUM1 -565483 sc-eQTL 9.51e-01 0.00391 0.0638 0.41 B_Naive LOneK1K
ENSG00000162510 MATN1 -223077 sc-eQTL 6.75e-01 0.0257 0.0614 0.41 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -257266 sc-eQTL 7.71e-01 0.0126 0.0432 0.41 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 4.36e-02 0.112 0.0553 0.41 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -231185 sc-eQTL 5.41e-01 0.0406 0.0663 0.41 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -796280 sc-eQTL 8.12e-01 0.0175 0.0734 0.41 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 6.22e-03 -0.226 0.0817 0.41 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -565483 sc-eQTL 9.88e-01 -0.000825 0.0531 0.41 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -257266 sc-eQTL 8.84e-01 0.00682 0.0466 0.41 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -408250 sc-eQTL 6.00e-01 0.05 0.0951 0.41 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -909057 sc-eQTL 5.36e-02 0.188 0.097 0.41 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -231185 sc-eQTL 7.85e-01 0.0205 0.0751 0.41 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -796280 sc-eQTL 5.43e-01 0.0484 0.0795 0.409 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 3.08e-01 0.0888 0.0868 0.409 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -565483 sc-eQTL 2.14e-01 0.0885 0.071 0.409 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -257266 sc-eQTL 7.83e-01 -0.0158 0.057 0.409 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -408250 sc-eQTL 9.13e-01 0.00913 0.0833 0.409 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -909057 sc-eQTL 4.74e-01 0.0619 0.0863 0.409 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -231185 sc-eQTL 4.22e-01 0.066 0.082 0.409 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -796280 sc-eQTL 3.65e-01 0.0797 0.0878 0.409 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -796474 sc-eQTL 3.97e-01 0.051 0.06 0.409 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -565483 sc-eQTL 9.59e-01 -0.00342 0.0658 0.409 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -257266 sc-eQTL 4.57e-01 0.0547 0.0735 0.409 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -217996 sc-eQTL 6.31e-01 -0.0408 0.0848 0.409 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -231185 sc-eQTL 5.77e-01 0.0409 0.0732 0.409 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000229447 AC114495.2 -763173 eQTL 0.0325 0.0739 0.0345 0.0011 0.0 0.405

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina