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Genes within 1Mb (chr1:30500140:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.96e-01 -0.022 0.0853 0.34 B L1
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 3.81e-01 -0.0598 0.0682 0.34 B L1
ENSG00000134644 PUM1 -565851 sc-eQTL 9.71e-01 -0.00209 0.0573 0.34 B L1
ENSG00000162510 MATN1 -223445 sc-eQTL 7.35e-01 0.0204 0.0602 0.34 B L1
ENSG00000162511 LAPTM5 -257634 sc-eQTL 3.47e-01 0.0444 0.0471 0.34 B L1
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 1.34e-02 0.136 0.0545 0.34 B L1
ENSG00000287510 AL137857.1 -231553 sc-eQTL 6.67e-01 0.0282 0.0654 0.34 B L1
ENSG00000060688 SNRNP40 -796648 sc-eQTL 4.12e-01 -0.0608 0.0739 0.34 CD4T L1
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 8.15e-01 0.0135 0.0579 0.34 CD4T L1
ENSG00000134644 PUM1 -565851 sc-eQTL 6.98e-01 -0.02 0.0515 0.34 CD4T L1
ENSG00000162511 LAPTM5 -257634 sc-eQTL 8.73e-01 0.00916 0.0571 0.34 CD4T L1
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 1.60e-01 0.0717 0.0508 0.34 CD4T L1
ENSG00000287510 AL137857.1 -231553 sc-eQTL 6.96e-01 -0.0239 0.0612 0.34 CD4T L1
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.06e-01 0.0364 0.0963 0.34 CD8T L1
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 4.96e-01 0.0436 0.0641 0.34 CD8T L1
ENSG00000134644 PUM1 -565851 sc-eQTL 7.40e-01 0.0188 0.0565 0.34 CD8T L1
ENSG00000162511 LAPTM5 -257634 sc-eQTL 5.11e-01 -0.0361 0.0548 0.34 CD8T L1
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 3.37e-01 0.0618 0.0641 0.34 CD8T L1
ENSG00000287510 AL137857.1 -231553 sc-eQTL 2.46e-01 0.0936 0.0805 0.34 CD8T L1
ENSG00000060688 SNRNP40 -796648 sc-eQTL 1.37e-01 0.125 0.0836 0.338 DC L1
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 3.95e-01 0.0847 0.0994 0.338 DC L1
ENSG00000134644 PUM1 -565851 sc-eQTL 9.93e-01 -0.00066 0.078 0.338 DC L1
ENSG00000162511 LAPTM5 -257634 sc-eQTL 8.72e-01 -0.00897 0.0557 0.338 DC L1
ENSG00000168528 SERINC2 -909425 sc-eQTL 3.84e-01 -0.0799 0.0916 0.338 DC L1
ENSG00000287510 AL137857.1 -231553 sc-eQTL 5.79e-01 0.0488 0.088 0.338 DC L1
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.80e-01 0.0186 0.0665 0.34 Mono L1
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 1.12e-01 -0.131 0.082 0.34 Mono L1
ENSG00000134644 PUM1 -565851 sc-eQTL 8.92e-01 -0.00716 0.0529 0.34 Mono L1
ENSG00000162511 LAPTM5 -257634 sc-eQTL 9.88e-01 -0.000709 0.0486 0.34 Mono L1
ENSG00000162512 SDC3 -408618 sc-eQTL 4.91e-01 -0.0644 0.0934 0.34 Mono L1
ENSG00000168528 SERINC2 -909425 sc-eQTL 3.54e-02 0.21 0.0992 0.34 Mono L1
ENSG00000287510 AL137857.1 -231553 sc-eQTL 7.75e-01 -0.0221 0.0772 0.34 Mono L1
ENSG00000060688 SNRNP40 -796648 sc-eQTL 1.76e-01 0.124 0.0911 0.339 NK L1
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 1.78e-01 0.0842 0.0624 0.339 NK L1
ENSG00000134644 PUM1 -565851 sc-eQTL 4.39e-01 -0.0509 0.0656 0.339 NK L1
ENSG00000162511 LAPTM5 -257634 sc-eQTL 1.58e-01 0.107 0.0753 0.339 NK L1
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 5.35e-01 0.0528 0.0849 0.339 NK L1
ENSG00000287510 AL137857.1 -231553 sc-eQTL 9.13e-01 0.0086 0.0785 0.339 NK L1
ENSG00000060688 SNRNP40 -796648 sc-eQTL 2.06e-01 -0.0878 0.0692 0.34 Other_T L1
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 2.12e-01 -0.0926 0.074 0.34 Other_T L1
ENSG00000134644 PUM1 -565851 sc-eQTL 5.62e-01 -0.0387 0.0667 0.34 Other_T L1
ENSG00000162511 LAPTM5 -257634 sc-eQTL 5.24e-01 0.0349 0.0547 0.34 Other_T L1
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 2.93e-01 -0.0943 0.0894 0.34 Other_T L1
ENSG00000287510 AL137857.1 -231553 sc-eQTL 1.76e-01 0.126 0.0929 0.34 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -796648 sc-eQTL 1.89e-01 0.142 0.108 0.339 B_Activated L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 5.17e-01 0.0709 0.109 0.339 B_Activated L2
ENSG00000134644 PUM1 -565851 sc-eQTL 1.61e-01 0.142 0.101 0.339 B_Activated L2
ENSG00000162510 MATN1 -223445 sc-eQTL 7.57e-01 0.0275 0.0888 0.339 B_Activated L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 9.40e-01 -0.00463 0.0619 0.339 B_Activated L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 9.81e-01 0.00233 0.1 0.339 B_Activated L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 9.33e-01 -0.0075 0.0885 0.339 B_Activated L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 6.78e-01 0.0431 0.104 0.339 B_Intermediate L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 2.76e-02 0.189 0.0854 0.339 B_Intermediate L2
ENSG00000134644 PUM1 -565851 sc-eQTL 8.53e-01 0.0151 0.0815 0.339 B_Intermediate L2
ENSG00000162510 MATN1 -223445 sc-eQTL 5.83e-01 0.0466 0.0848 0.339 B_Intermediate L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 5.04e-01 0.0348 0.052 0.339 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 6.09e-01 0.0375 0.073 0.339 B_Intermediate L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 6.32e-01 -0.0392 0.0817 0.339 B_Intermediate L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.90e-01 -0.0263 0.0985 0.341 B_Memory L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 2.95e-01 -0.0951 0.0905 0.341 B_Memory L2
ENSG00000134644 PUM1 -565851 sc-eQTL 7.10e-01 0.0295 0.079 0.341 B_Memory L2
ENSG00000162510 MATN1 -223445 sc-eQTL 8.39e-01 -0.0153 0.0756 0.341 B_Memory L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 6.66e-01 0.0289 0.067 0.341 B_Memory L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 7.06e-01 -0.0289 0.0767 0.341 B_Memory L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 9.47e-01 0.00593 0.0898 0.341 B_Memory L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 6.49e-01 -0.0419 0.0921 0.34 B_Naive1 L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 8.25e-01 0.0176 0.0795 0.34 B_Naive1 L2
ENSG00000134644 PUM1 -565851 sc-eQTL 9.46e-01 0.00476 0.0702 0.34 B_Naive1 L2
ENSG00000162510 MATN1 -223445 sc-eQTL 7.81e-01 0.0198 0.0712 0.34 B_Naive1 L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 4.49e-01 0.036 0.0475 0.34 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 8.49e-03 0.163 0.0614 0.34 B_Naive1 L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 5.98e-01 0.0407 0.0771 0.34 B_Naive1 L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 8.32e-01 0.0203 0.0959 0.341 B_Naive2 L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 7.28e-01 0.0275 0.0791 0.341 B_Naive2 L2
ENSG00000134644 PUM1 -565851 sc-eQTL 6.44e-01 -0.0359 0.0774 0.341 B_Naive2 L2
ENSG00000162510 MATN1 -223445 sc-eQTL 8.63e-01 0.0128 0.0744 0.341 B_Naive2 L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 8.57e-01 -0.00914 0.0505 0.341 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 4.30e-01 0.058 0.0734 0.341 B_Naive2 L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 9.92e-01 0.00079 0.0795 0.341 B_Naive2 L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.26e-01 -0.0339 0.0966 0.336 CD4_CTL L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 4.51e-01 -0.0717 0.0949 0.336 CD4_CTL L2
ENSG00000134644 PUM1 -565851 sc-eQTL 8.61e-01 -0.0164 0.0932 0.336 CD4_CTL L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 7.45e-01 -0.0271 0.083 0.336 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 2.49e-01 -0.105 0.0905 0.336 CD4_CTL L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 8.37e-01 -0.0165 0.0802 0.336 CD4_CTL L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 2.91e-01 -0.0814 0.0768 0.34 CD4_Naive L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 1.81e-01 0.0913 0.068 0.34 CD4_Naive L2
ENSG00000134644 PUM1 -565851 sc-eQTL 7.91e-01 -0.0144 0.0545 0.34 CD4_Naive L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 8.56e-01 0.0106 0.0584 0.34 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 1.55e-01 0.0842 0.059 0.34 CD4_Naive L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 2.31e-01 -0.0816 0.0679 0.34 CD4_Naive L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 3.37e-01 0.0931 0.0967 0.34 CD4_TCM L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 4.13e-01 -0.064 0.078 0.34 CD4_TCM L2
ENSG00000134644 PUM1 -565851 sc-eQTL 3.69e-01 -0.0622 0.069 0.34 CD4_TCM L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 6.18e-01 0.0286 0.0573 0.34 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 7.13e-01 0.0268 0.0728 0.34 CD4_TCM L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 2.53e-01 0.0927 0.0808 0.34 CD4_TCM L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 3.61e-01 -0.0883 0.0965 0.34 CD4_TEM L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 5.97e-01 -0.0487 0.0921 0.34 CD4_TEM L2
ENSG00000134644 PUM1 -565851 sc-eQTL 4.19e-01 0.0621 0.0766 0.34 CD4_TEM L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 2.97e-01 -0.081 0.0774 0.34 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 7.42e-02 0.162 0.0901 0.34 CD4_TEM L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 4.28e-01 -0.0709 0.0893 0.34 CD4_TEM L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 4.58e-01 -0.076 0.102 0.34 CD8_CTL L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 1.22e-01 0.121 0.0781 0.34 CD8_CTL L2
ENSG00000134644 PUM1 -565851 sc-eQTL 8.29e-01 -0.0165 0.0762 0.34 CD8_CTL L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 3.15e-01 -0.0849 0.0842 0.34 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 8.23e-01 0.0199 0.0888 0.34 CD8_CTL L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 4.28e-01 0.0662 0.0834 0.34 CD8_CTL L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 9.52e-01 0.00573 0.0961 0.34 CD8_Naive L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 5.84e-01 -0.0454 0.0828 0.34 CD8_Naive L2
ENSG00000134644 PUM1 -565851 sc-eQTL 5.70e-01 -0.0379 0.0666 0.34 CD8_Naive L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 9.88e-01 0.000983 0.0639 0.34 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 5.73e-02 0.151 0.0791 0.34 CD8_Naive L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 6.44e-01 0.0402 0.0868 0.34 CD8_Naive L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.95e-01 -0.0274 0.105 0.347 CD8_TCM L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 7.05e-01 0.0365 0.0963 0.347 CD8_TCM L2
ENSG00000134644 PUM1 -565851 sc-eQTL 8.23e-01 0.0203 0.0906 0.347 CD8_TCM L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 7.15e-02 0.17 0.094 0.347 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 4.00e-01 0.0739 0.0876 0.347 CD8_TCM L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 7.06e-02 -0.16 0.088 0.347 CD8_TCM L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 2.74e-01 0.109 0.0996 0.347 CD8_TEM L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 7.57e-01 -0.0297 0.0958 0.347 CD8_TEM L2
ENSG00000134644 PUM1 -565851 sc-eQTL 8.73e-01 0.0156 0.0979 0.347 CD8_TEM L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 5.05e-01 -0.0615 0.092 0.347 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 1.78e-01 0.128 0.0951 0.347 CD8_TEM L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 1.79e-02 0.204 0.0852 0.347 CD8_TEM L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 8.76e-01 -0.0161 0.103 0.34 MAIT L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 8.58e-01 0.0163 0.0916 0.34 MAIT L2
ENSG00000134644 PUM1 -565851 sc-eQTL 4.72e-01 0.0631 0.0877 0.34 MAIT L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 7.99e-01 0.0211 0.0828 0.34 MAIT L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 9.98e-02 -0.151 0.0916 0.34 MAIT L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 3.83e-01 0.0829 0.0949 0.34 MAIT L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.14e-01 -0.0373 0.101 0.342 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 8.75e-01 0.0135 0.0857 0.342 NK_CD56bright L2
ENSG00000134644 PUM1 -565851 sc-eQTL 7.41e-01 0.0298 0.09 0.342 NK_CD56bright L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 8.46e-02 0.153 0.0881 0.342 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 7.87e-02 0.156 0.0885 0.342 NK_CD56bright L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 1.22e-01 0.136 0.0874 0.342 NK_CD56bright L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 5.82e-02 0.182 0.0953 0.338 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 1.30e-01 0.107 0.0707 0.338 NK_CD56dim L2
ENSG00000134644 PUM1 -565851 sc-eQTL 2.24e-01 -0.0886 0.0727 0.338 NK_CD56dim L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 1.42e-01 0.114 0.0774 0.338 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 7.84e-01 -0.0267 0.0975 0.338 NK_CD56dim L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 1.55e-01 -0.114 0.08 0.338 NK_CD56dim L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 5.50e-01 -0.0604 0.101 0.342 NK_HLA L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 5.43e-02 0.173 0.0892 0.342 NK_HLA L2
ENSG00000134644 PUM1 -565851 sc-eQTL 4.04e-01 -0.0732 0.0876 0.342 NK_HLA L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 1.12e-01 0.133 0.0832 0.342 NK_HLA L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 4.59e-01 -0.066 0.0889 0.342 NK_HLA L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 1.26e-01 -0.132 0.0856 0.342 NK_HLA L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 8.39e-01 0.019 0.0935 0.338 NK_cytokine L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 2.87e-01 -0.0777 0.0728 0.338 NK_cytokine L2
ENSG00000134644 PUM1 -565851 sc-eQTL 3.73e-01 0.0704 0.0788 0.338 NK_cytokine L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 5.19e-01 0.0561 0.0868 0.338 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 2.43e-01 0.107 0.0918 0.338 NK_cytokine L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 4.79e-01 0.0608 0.0856 0.338 NK_cytokine L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 9.01e-01 -0.0137 0.109 0.307 PB L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 4.09e-01 -0.105 0.126 0.307 PB L2
ENSG00000134644 PUM1 -565851 sc-eQTL 2.60e-01 -0.124 0.11 0.307 PB L2
ENSG00000162510 MATN1 -223445 sc-eQTL 1.00e+00 -3.07e-06 0.103 0.307 PB L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 3.86e-01 -0.0637 0.0732 0.307 PB L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 5.36e-01 -0.0623 0.1 0.307 PB L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 2.36e-01 -0.127 0.106 0.307 PB L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.11e-01 -0.0278 0.0748 0.341 Pro_T L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 6.32e-01 0.0455 0.095 0.341 Pro_T L2
ENSG00000134644 PUM1 -565851 sc-eQTL 9.33e-01 0.00741 0.0886 0.341 Pro_T L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 2.99e-01 0.0661 0.0634 0.341 Pro_T L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 9.27e-01 0.00814 0.0889 0.341 Pro_T L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 1.38e-01 0.121 0.0813 0.341 Pro_T L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 6.88e-02 0.178 0.0974 0.34 Treg L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 4.29e-01 0.0752 0.0948 0.34 Treg L2
ENSG00000134644 PUM1 -565851 sc-eQTL 6.28e-01 0.0368 0.076 0.34 Treg L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 9.42e-01 0.00635 0.087 0.34 Treg L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 7.68e-02 -0.156 0.088 0.34 Treg L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 7.55e-01 0.0277 0.0885 0.34 Treg L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 2.76e-01 0.108 0.0989 0.329 cDC L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 9.66e-01 -0.00462 0.107 0.329 cDC L2
ENSG00000134644 PUM1 -565851 sc-eQTL 2.33e-01 0.11 0.0919 0.329 cDC L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 4.69e-01 0.0468 0.0646 0.329 cDC L2
ENSG00000168528 SERINC2 -909425 sc-eQTL 4.22e-01 -0.0667 0.0829 0.329 cDC L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 6.76e-01 -0.0367 0.0878 0.329 cDC L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 8.75e-01 -0.0126 0.08 0.34 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 1.40e-02 -0.218 0.088 0.34 cMono_IL1B L2
ENSG00000134644 PUM1 -565851 sc-eQTL 6.77e-01 0.0252 0.0604 0.34 cMono_IL1B L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 7.46e-01 0.0172 0.053 0.34 cMono_IL1B L2
ENSG00000162512 SDC3 -408618 sc-eQTL 9.45e-01 -0.00685 0.0999 0.34 cMono_IL1B L2
ENSG00000168528 SERINC2 -909425 sc-eQTL 1.75e-02 0.239 0.0998 0.34 cMono_IL1B L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 1.18e-01 -0.13 0.0829 0.34 cMono_IL1B L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 9.59e-01 0.00426 0.0836 0.34 cMono_S100A L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 4.11e-01 -0.0813 0.0986 0.34 cMono_S100A L2
ENSG00000134644 PUM1 -565851 sc-eQTL 3.47e-01 -0.0672 0.0712 0.34 cMono_S100A L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 5.81e-01 -0.0303 0.0548 0.34 cMono_S100A L2
ENSG00000162512 SDC3 -408618 sc-eQTL 7.00e-01 -0.0365 0.0948 0.34 cMono_S100A L2
ENSG00000168528 SERINC2 -909425 sc-eQTL 1.31e-01 0.151 0.0998 0.34 cMono_S100A L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 6.13e-01 0.0415 0.0818 0.34 cMono_S100A L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 2.77e-01 -0.134 0.123 0.367 gdT L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 8.82e-01 0.0157 0.106 0.367 gdT L2
ENSG00000134644 PUM1 -565851 sc-eQTL 2.27e-02 -0.247 0.107 0.367 gdT L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 9.63e-01 -0.00553 0.119 0.367 gdT L2
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 6.07e-01 -0.0563 0.109 0.367 gdT L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 9.03e-01 -0.0129 0.106 0.367 gdT L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 9.44e-01 0.00645 0.0917 0.34 intMono L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 1.65e-01 0.137 0.0981 0.34 intMono L2
ENSG00000134644 PUM1 -565851 sc-eQTL 8.36e-02 0.144 0.083 0.34 intMono L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 3.14e-01 0.0661 0.0655 0.34 intMono L2
ENSG00000162512 SDC3 -408618 sc-eQTL 7.24e-01 -0.0318 0.0898 0.34 intMono L2
ENSG00000168528 SERINC2 -909425 sc-eQTL 3.07e-01 0.0961 0.0938 0.34 intMono L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 2.17e-01 -0.11 0.0888 0.34 intMono L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 9.64e-01 0.00393 0.0871 0.337 ncMono L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 9.17e-01 -0.00971 0.0928 0.337 ncMono L2
ENSG00000134644 PUM1 -565851 sc-eQTL 1.61e-01 0.106 0.0755 0.337 ncMono L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 5.25e-01 -0.0438 0.0688 0.337 ncMono L2
ENSG00000162512 SDC3 -408618 sc-eQTL 9.55e-01 0.00438 0.0773 0.337 ncMono L2
ENSG00000168528 SERINC2 -909425 sc-eQTL 4.68e-01 0.0613 0.0842 0.337 ncMono L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 3.99e-01 0.0738 0.0872 0.337 ncMono L2
ENSG00000060688 SNRNP40 -796648 sc-eQTL 5.80e-01 0.0543 0.098 0.342 pDC L2
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 5.44e-01 -0.0654 0.108 0.342 pDC L2
ENSG00000134644 PUM1 -565851 sc-eQTL 1.78e-01 -0.12 0.0887 0.342 pDC L2
ENSG00000162511 LAPTM5 -257634 sc-eQTL 6.97e-01 0.0324 0.0829 0.342 pDC L2
ENSG00000168528 SERINC2 -909425 sc-eQTL 3.41e-01 -0.0959 0.1 0.342 pDC L2
ENSG00000287510 AL137857.1 -231553 sc-eQTL 3.02e-01 0.0947 0.0916 0.342 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -796648 sc-eQTL 9.54e-01 0.00568 0.0982 0.34 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 5.24e-01 0.0521 0.0816 0.34 B_Memory LOneK1K
ENSG00000134644 PUM1 -565851 sc-eQTL 2.34e-01 0.0861 0.0722 0.34 B_Memory LOneK1K
ENSG00000162510 MATN1 -223445 sc-eQTL 4.33e-01 0.0647 0.0824 0.34 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -257634 sc-eQTL 6.08e-01 0.0266 0.0518 0.34 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 6.99e-01 0.0266 0.0686 0.34 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -231553 sc-eQTL 9.21e-01 -0.00745 0.0748 0.34 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -796648 sc-eQTL 7.16e-01 -0.0327 0.0898 0.34 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 9.70e-01 -0.00266 0.071 0.34 B_Naive LOneK1K
ENSG00000134644 PUM1 -565851 sc-eQTL 3.44e-01 -0.0636 0.067 0.34 B_Naive LOneK1K
ENSG00000162510 MATN1 -223445 sc-eQTL 5.33e-01 0.0404 0.0646 0.34 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -257634 sc-eQTL 4.78e-01 0.0323 0.0455 0.34 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 1.01e-02 0.15 0.0579 0.34 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -231553 sc-eQTL 8.91e-01 0.00961 0.0698 0.34 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -796648 sc-eQTL 9.52e-01 0.00455 0.0761 0.34 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 2.34e-02 -0.194 0.0851 0.34 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -565851 sc-eQTL 6.76e-01 -0.023 0.0549 0.34 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -257634 sc-eQTL 8.64e-01 -0.00826 0.0483 0.34 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -408618 sc-eQTL 9.12e-01 0.011 0.0985 0.34 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -909425 sc-eQTL 3.77e-02 0.21 0.1 0.34 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -231553 sc-eQTL 4.90e-01 -0.0537 0.0777 0.34 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -796648 sc-eQTL 8.14e-01 0.0195 0.0828 0.338 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 7.79e-01 0.0255 0.0906 0.338 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -565851 sc-eQTL 2.52e-01 0.085 0.074 0.338 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -257634 sc-eQTL 6.84e-01 0.0242 0.0594 0.338 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -408618 sc-eQTL 5.99e-01 -0.0457 0.0867 0.338 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -909425 sc-eQTL 3.76e-01 0.0796 0.0898 0.338 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -231553 sc-eQTL 8.53e-01 0.0159 0.0855 0.338 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -796648 sc-eQTL 1.24e-01 0.141 0.0913 0.338 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -796842 sc-eQTL 2.12e-01 0.0782 0.0625 0.338 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -565851 sc-eQTL 4.46e-01 -0.0524 0.0686 0.338 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -257634 sc-eQTL 2.38e-01 0.0905 0.0765 0.338 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -218364 sc-eQTL 6.25e-01 0.0433 0.0885 0.338 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -231553 sc-eQTL 4.98e-01 -0.0518 0.0763 0.338 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168528 SERINC2 -909425 eQTL 0.0342 0.0855 0.0403 0.0 0.0 0.337

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000168528 SERINC2 -909425 2.77e-07 1.34e-07 5.64e-08 1.9e-07 9.8e-08 9.05e-08 1.67e-07 5.43e-08 1.5e-07 6.4e-08 1.63e-07 1.08e-07 1.69e-07 7.37e-08 5.98e-08 7.74e-08 4.12e-08 1.51e-07 6.75e-08 4.92e-08 1.25e-07 1.25e-07 1.44e-07 3.17e-08 1.65e-07 1.22e-07 1.18e-07 1.04e-07 1.22e-07 9.88e-08 1.06e-07 3.54e-08 3.43e-08 8.89e-08 3.52e-08 2.69e-08 5.59e-08 9.03e-08 6.43e-08 3.75e-08 5.42e-08 1.46e-07 5.24e-08 1.11e-08 3.2e-08 1.8e-08 1.2e-07 1.9e-09 4.99e-08