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Genes within 1Mb (chr1:30499291:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -797497 sc-eQTL 3.45e-01 -0.0761 0.0805 0.41 B L1
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 4.75e-01 -0.0462 0.0645 0.41 B L1
ENSG00000134644 PUM1 -566700 sc-eQTL 3.47e-01 0.051 0.0541 0.41 B L1
ENSG00000162510 MATN1 -224294 sc-eQTL 8.06e-01 0.014 0.0569 0.41 B L1
ENSG00000162511 LAPTM5 -258483 sc-eQTL 6.35e-01 0.0212 0.0446 0.41 B L1
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 3.11e-02 0.112 0.0517 0.41 B L1
ENSG00000287510 AL137857.1 -232402 sc-eQTL 3.64e-01 0.0561 0.0617 0.41 B L1
ENSG00000060688 SNRNP40 -797497 sc-eQTL 5.18e-01 -0.0456 0.0704 0.41 CD4T L1
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 5.87e-01 -0.0299 0.055 0.41 CD4T L1
ENSG00000134644 PUM1 -566700 sc-eQTL 3.78e-01 -0.0432 0.0489 0.41 CD4T L1
ENSG00000162511 LAPTM5 -258483 sc-eQTL 8.21e-01 -0.0123 0.0543 0.41 CD4T L1
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 1.88e-01 0.0638 0.0484 0.41 CD4T L1
ENSG00000287510 AL137857.1 -232402 sc-eQTL 2.84e-01 -0.0623 0.058 0.41 CD4T L1
ENSG00000060688 SNRNP40 -797497 sc-eQTL 2.92e-01 0.0963 0.0912 0.41 CD8T L1
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 8.63e-01 0.0105 0.0608 0.41 CD8T L1
ENSG00000134644 PUM1 -566700 sc-eQTL 6.58e-01 -0.0237 0.0535 0.41 CD8T L1
ENSG00000162511 LAPTM5 -258483 sc-eQTL 2.79e-01 -0.0562 0.0519 0.41 CD8T L1
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 2.23e-01 0.0742 0.0607 0.41 CD8T L1
ENSG00000287510 AL137857.1 -232402 sc-eQTL 3.23e-01 0.0757 0.0764 0.41 CD8T L1
ENSG00000060688 SNRNP40 -797497 sc-eQTL 6.79e-02 0.147 0.0802 0.403 DC L1
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 6.16e-01 0.0481 0.0958 0.403 DC L1
ENSG00000134644 PUM1 -566700 sc-eQTL 7.50e-01 -0.024 0.075 0.403 DC L1
ENSG00000162511 LAPTM5 -258483 sc-eQTL 6.56e-01 -0.0239 0.0536 0.403 DC L1
ENSG00000168528 SERINC2 -910274 sc-eQTL 1.94e-01 -0.115 0.088 0.403 DC L1
ENSG00000287510 AL137857.1 -232402 sc-eQTL 8.94e-01 -0.0113 0.0848 0.403 DC L1
ENSG00000060688 SNRNP40 -797497 sc-eQTL 6.24e-01 0.0314 0.064 0.41 Mono L1
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 7.49e-02 -0.141 0.0788 0.41 Mono L1
ENSG00000134644 PUM1 -566700 sc-eQTL 8.33e-01 0.0107 0.0509 0.41 Mono L1
ENSG00000162511 LAPTM5 -258483 sc-eQTL 9.20e-01 -0.00472 0.0468 0.41 Mono L1
ENSG00000162512 SDC3 -409467 sc-eQTL 8.42e-01 0.0179 0.09 0.41 Mono L1
ENSG00000168528 SERINC2 -910274 sc-eQTL 6.58e-02 0.177 0.0958 0.41 Mono L1
ENSG00000287510 AL137857.1 -232402 sc-eQTL 3.53e-01 0.069 0.0742 0.41 Mono L1
ENSG00000060688 SNRNP40 -797497 sc-eQTL 4.76e-01 0.0625 0.0877 0.41 NK L1
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 3.04e-01 0.0618 0.0599 0.41 NK L1
ENSG00000134644 PUM1 -566700 sc-eQTL 9.72e-01 -0.0022 0.063 0.41 NK L1
ENSG00000162511 LAPTM5 -258483 sc-eQTL 3.58e-01 0.0666 0.0724 0.41 NK L1
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 6.43e-01 -0.0379 0.0815 0.41 NK L1
ENSG00000287510 AL137857.1 -232402 sc-eQTL 3.79e-01 0.0662 0.0751 0.41 NK L1
ENSG00000060688 SNRNP40 -797497 sc-eQTL 4.10e-01 -0.0551 0.0668 0.41 Other_T L1
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 1.71e-01 -0.0978 0.0711 0.41 Other_T L1
ENSG00000134644 PUM1 -566700 sc-eQTL 3.73e-01 -0.0573 0.0641 0.41 Other_T L1
ENSG00000162511 LAPTM5 -258483 sc-eQTL 9.75e-01 0.00163 0.0527 0.41 Other_T L1
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 8.42e-01 -0.0172 0.0862 0.41 Other_T L1
ENSG00000287510 AL137857.1 -232402 sc-eQTL 1.16e-01 0.141 0.0893 0.41 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -797497 sc-eQTL 4.61e-01 0.0761 0.103 0.418 B_Activated L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 6.40e-01 0.0488 0.104 0.418 B_Activated L2
ENSG00000134644 PUM1 -566700 sc-eQTL 4.13e-01 0.0794 0.0966 0.418 B_Activated L2
ENSG00000162510 MATN1 -224294 sc-eQTL 3.80e-01 -0.0744 0.0844 0.418 B_Activated L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 7.31e-01 0.0203 0.059 0.418 B_Activated L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 8.09e-01 -0.023 0.0953 0.418 B_Activated L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 6.27e-01 0.041 0.0842 0.418 B_Activated L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 6.13e-01 -0.0497 0.098 0.41 B_Intermediate L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 3.77e-02 0.169 0.0809 0.41 B_Intermediate L2
ENSG00000134644 PUM1 -566700 sc-eQTL 5.65e-01 0.0444 0.077 0.41 B_Intermediate L2
ENSG00000162510 MATN1 -224294 sc-eQTL 7.40e-01 0.0267 0.0802 0.41 B_Intermediate L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 6.64e-01 0.0214 0.0492 0.41 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 8.04e-01 0.0172 0.0691 0.41 B_Intermediate L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 8.86e-01 0.0111 0.0773 0.41 B_Intermediate L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 5.72e-01 0.0532 0.094 0.409 B_Memory L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 1.19e-01 -0.135 0.0862 0.409 B_Memory L2
ENSG00000134644 PUM1 -566700 sc-eQTL 9.43e-01 0.00543 0.0754 0.409 B_Memory L2
ENSG00000162510 MATN1 -224294 sc-eQTL 6.42e-01 -0.0336 0.0721 0.409 B_Memory L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 6.46e-01 -0.0294 0.0639 0.409 B_Memory L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 7.83e-01 0.0202 0.0732 0.409 B_Memory L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 7.36e-01 0.029 0.0857 0.409 B_Memory L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 7.39e-01 -0.0294 0.0881 0.41 B_Naive1 L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 3.82e-01 0.0665 0.0759 0.41 B_Naive1 L2
ENSG00000134644 PUM1 -566700 sc-eQTL 3.11e-01 0.068 0.0669 0.41 B_Naive1 L2
ENSG00000162510 MATN1 -224294 sc-eQTL 6.61e-01 0.0299 0.0681 0.41 B_Naive1 L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 8.03e-01 0.0114 0.0455 0.41 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 3.91e-02 0.123 0.0591 0.41 B_Naive1 L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 5.34e-01 0.046 0.0737 0.41 B_Naive1 L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 1.09e-01 -0.148 0.0917 0.41 B_Naive2 L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 8.59e-01 0.0135 0.0762 0.41 B_Naive2 L2
ENSG00000134644 PUM1 -566700 sc-eQTL 9.63e-01 0.00342 0.0745 0.41 B_Naive2 L2
ENSG00000162510 MATN1 -224294 sc-eQTL 6.83e-01 -0.0293 0.0715 0.41 B_Naive2 L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 7.72e-01 -0.0141 0.0486 0.41 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 7.86e-01 0.0192 0.0707 0.41 B_Naive2 L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 5.49e-01 0.0458 0.0764 0.41 B_Naive2 L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 1.95e-01 -0.119 0.0914 0.407 CD4_CTL L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 5.97e-01 -0.0477 0.0902 0.407 CD4_CTL L2
ENSG00000134644 PUM1 -566700 sc-eQTL 1.19e-01 -0.138 0.088 0.407 CD4_CTL L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 4.54e-01 -0.0592 0.0788 0.407 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 2.24e-01 -0.105 0.086 0.407 CD4_CTL L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 9.55e-01 -0.00429 0.0762 0.407 CD4_CTL L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 5.91e-01 -0.0396 0.0736 0.41 CD4_Naive L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 9.09e-01 0.00748 0.0653 0.41 CD4_Naive L2
ENSG00000134644 PUM1 -566700 sc-eQTL 6.38e-01 -0.0245 0.0521 0.41 CD4_Naive L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 9.88e-01 -0.000861 0.0558 0.41 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 3.49e-01 0.0531 0.0565 0.41 CD4_Naive L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 1.86e-01 -0.0861 0.0648 0.41 CD4_Naive L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 9.91e-01 -0.00105 0.0923 0.41 CD4_TCM L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 7.98e-01 -0.0191 0.0744 0.41 CD4_TCM L2
ENSG00000134644 PUM1 -566700 sc-eQTL 4.82e-01 -0.0463 0.0658 0.41 CD4_TCM L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 4.51e-01 -0.0412 0.0546 0.41 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 2.58e-01 0.0785 0.0691 0.41 CD4_TCM L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 6.92e-01 0.0307 0.0772 0.41 CD4_TCM L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 4.03e-01 -0.0776 0.0925 0.41 CD4_TEM L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 5.59e-01 -0.0516 0.0883 0.41 CD4_TEM L2
ENSG00000134644 PUM1 -566700 sc-eQTL 4.60e-01 0.0543 0.0735 0.41 CD4_TEM L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 8.54e-02 -0.128 0.0739 0.41 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 2.48e-01 0.1 0.0868 0.41 CD4_TEM L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 7.97e-01 -0.0221 0.0858 0.41 CD4_TEM L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 9.15e-01 0.0106 0.0987 0.41 CD8_CTL L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 1.22e-01 0.117 0.0753 0.41 CD8_CTL L2
ENSG00000134644 PUM1 -566700 sc-eQTL 8.05e-01 0.0182 0.0735 0.41 CD8_CTL L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 5.00e-01 -0.0549 0.0813 0.41 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 3.61e-01 0.0782 0.0854 0.41 CD8_CTL L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 2.81e-01 0.0867 0.0803 0.41 CD8_CTL L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 7.74e-01 0.0263 0.0915 0.41 CD8_Naive L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 5.54e-01 -0.0467 0.0788 0.41 CD8_Naive L2
ENSG00000134644 PUM1 -566700 sc-eQTL 2.47e-01 -0.0734 0.0633 0.41 CD8_Naive L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 2.33e-01 -0.0726 0.0606 0.41 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 5.82e-01 0.0418 0.0759 0.41 CD8_Naive L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 6.66e-01 0.0357 0.0826 0.41 CD8_Naive L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 9.11e-01 0.0113 0.101 0.414 CD8_TCM L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 7.45e-01 0.0302 0.0927 0.414 CD8_TCM L2
ENSG00000134644 PUM1 -566700 sc-eQTL 7.71e-01 0.0254 0.0871 0.414 CD8_TCM L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 2.52e-01 0.104 0.0909 0.414 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 2.80e-01 0.0912 0.0842 0.414 CD8_TCM L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 1.91e-01 -0.111 0.085 0.414 CD8_TCM L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 4.47e-01 0.073 0.0958 0.413 CD8_TEM L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 9.77e-01 -0.00267 0.092 0.413 CD8_TEM L2
ENSG00000134644 PUM1 -566700 sc-eQTL 8.56e-01 0.0171 0.0941 0.413 CD8_TEM L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 7.57e-01 -0.0275 0.0884 0.413 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 3.26e-01 0.0902 0.0916 0.413 CD8_TEM L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 8.68e-03 0.216 0.0816 0.413 CD8_TEM L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 8.08e-01 0.0239 0.0983 0.409 MAIT L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 4.17e-01 -0.0707 0.0869 0.409 MAIT L2
ENSG00000134644 PUM1 -566700 sc-eQTL 6.88e-01 0.0336 0.0834 0.409 MAIT L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 7.67e-01 -0.0234 0.0787 0.409 MAIT L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 1.47e-01 -0.127 0.0872 0.409 MAIT L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 3.08e-01 0.0921 0.0901 0.409 MAIT L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 2.59e-01 -0.109 0.0964 0.411 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 7.71e-01 0.0239 0.0817 0.411 NK_CD56bright L2
ENSG00000134644 PUM1 -566700 sc-eQTL 9.31e-01 -0.00746 0.0858 0.411 NK_CD56bright L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 1.92e-01 0.11 0.0843 0.411 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 1.21e-01 0.132 0.0846 0.411 NK_CD56bright L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 3.22e-02 0.179 0.0829 0.411 NK_CD56bright L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 2.58e-01 0.105 0.0922 0.409 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 2.74e-01 0.0747 0.0682 0.409 NK_CD56dim L2
ENSG00000134644 PUM1 -566700 sc-eQTL 7.30e-01 -0.0242 0.0702 0.409 NK_CD56dim L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 3.02e-01 0.0773 0.0746 0.409 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 3.57e-01 -0.0864 0.0936 0.409 NK_CD56dim L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 8.86e-01 0.0111 0.0773 0.409 NK_CD56dim L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 8.08e-01 -0.0233 0.0958 0.411 NK_HLA L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 1.95e-02 0.199 0.0843 0.411 NK_HLA L2
ENSG00000134644 PUM1 -566700 sc-eQTL 8.45e-01 0.0164 0.0833 0.411 NK_HLA L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 2.45e-01 0.0925 0.0793 0.411 NK_HLA L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 6.38e-01 -0.0398 0.0846 0.411 NK_HLA L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 8.75e-01 0.0129 0.0818 0.411 NK_HLA L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 8.20e-01 -0.0206 0.0905 0.409 NK_cytokine L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 4.79e-01 -0.05 0.0705 0.409 NK_cytokine L2
ENSG00000134644 PUM1 -566700 sc-eQTL 3.43e-01 0.0725 0.0762 0.409 NK_cytokine L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 4.30e-01 0.0664 0.0839 0.409 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 4.65e-01 0.0652 0.089 0.409 NK_cytokine L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 2.37e-01 0.098 0.0826 0.409 NK_cytokine L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 6.00e-01 0.0555 0.106 0.381 PB L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 3.82e-01 -0.107 0.122 0.381 PB L2
ENSG00000134644 PUM1 -566700 sc-eQTL 6.46e-01 -0.049 0.107 0.381 PB L2
ENSG00000162510 MATN1 -224294 sc-eQTL 6.53e-01 -0.0447 0.0993 0.381 PB L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 1.96e-01 -0.0917 0.0705 0.381 PB L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 3.93e-01 -0.0831 0.0969 0.381 PB L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 3.00e-01 -0.107 0.103 0.381 PB L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 6.60e-01 -0.0315 0.0716 0.413 Pro_T L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 9.69e-01 -0.00352 0.0909 0.413 Pro_T L2
ENSG00000134644 PUM1 -566700 sc-eQTL 4.06e-01 0.0705 0.0847 0.413 Pro_T L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 4.64e-01 0.0445 0.0608 0.413 Pro_T L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 7.66e-01 0.0253 0.085 0.413 Pro_T L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 1.30e-01 0.118 0.0778 0.413 Pro_T L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 1.63e-02 0.225 0.0927 0.41 Treg L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 5.50e-01 0.0544 0.0909 0.41 Treg L2
ENSG00000134644 PUM1 -566700 sc-eQTL 9.26e-01 -0.00676 0.0728 0.41 Treg L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 8.44e-01 -0.0164 0.0833 0.41 Treg L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 1.83e-02 -0.199 0.0838 0.41 Treg L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 2.53e-01 0.0969 0.0845 0.41 Treg L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 4.02e-01 0.0794 0.0947 0.398 cDC L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 4.29e-01 -0.0812 0.103 0.398 cDC L2
ENSG00000134644 PUM1 -566700 sc-eQTL 6.28e-01 0.0428 0.0881 0.398 cDC L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 6.68e-01 0.0266 0.0618 0.398 cDC L2
ENSG00000168528 SERINC2 -910274 sc-eQTL 5.77e-01 -0.0443 0.0793 0.398 cDC L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 2.09e-01 -0.105 0.0836 0.398 cDC L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 8.61e-01 -0.0136 0.0771 0.41 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 1.39e-02 -0.21 0.0848 0.41 cMono_IL1B L2
ENSG00000134644 PUM1 -566700 sc-eQTL 5.95e-01 0.031 0.0582 0.41 cMono_IL1B L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 5.79e-01 0.0284 0.0511 0.41 cMono_IL1B L2
ENSG00000162512 SDC3 -409467 sc-eQTL 5.20e-01 0.062 0.0962 0.41 cMono_IL1B L2
ENSG00000168528 SERINC2 -910274 sc-eQTL 1.77e-02 0.23 0.0962 0.41 cMono_IL1B L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 7.32e-01 -0.0276 0.0803 0.41 cMono_IL1B L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 9.44e-01 0.00572 0.081 0.41 cMono_S100A L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 1.68e-01 -0.132 0.0952 0.41 cMono_S100A L2
ENSG00000134644 PUM1 -566700 sc-eQTL 4.07e-01 -0.0573 0.069 0.41 cMono_S100A L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 9.07e-01 0.00621 0.0531 0.41 cMono_S100A L2
ENSG00000162512 SDC3 -409467 sc-eQTL 9.04e-01 -0.0111 0.0918 0.41 cMono_S100A L2
ENSG00000168528 SERINC2 -910274 sc-eQTL 2.58e-01 0.11 0.0969 0.41 cMono_S100A L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 5.17e-01 0.0513 0.0792 0.41 cMono_S100A L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 6.42e-01 -0.0545 0.117 0.427 gdT L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 9.48e-01 -0.00663 0.1 0.427 gdT L2
ENSG00000134644 PUM1 -566700 sc-eQTL 4.80e-02 -0.204 0.102 0.427 gdT L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 5.03e-01 -0.0755 0.112 0.427 gdT L2
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 7.23e-01 0.0369 0.104 0.427 gdT L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 6.36e-01 0.0478 0.101 0.427 gdT L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 8.05e-01 -0.0219 0.0886 0.413 intMono L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 1.42e-01 0.14 0.0948 0.413 intMono L2
ENSG00000134644 PUM1 -566700 sc-eQTL 2.05e-02 0.186 0.0798 0.413 intMono L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 5.16e-01 0.0412 0.0633 0.413 intMono L2
ENSG00000162512 SDC3 -409467 sc-eQTL 7.96e-01 0.0225 0.0868 0.413 intMono L2
ENSG00000168528 SERINC2 -910274 sc-eQTL 3.17e-01 0.091 0.0907 0.413 intMono L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 5.06e-01 -0.0573 0.0861 0.413 intMono L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 4.56e-01 0.0621 0.0832 0.407 ncMono L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 3.96e-01 0.0754 0.0887 0.407 ncMono L2
ENSG00000134644 PUM1 -566700 sc-eQTL 2.93e-01 0.0764 0.0724 0.407 ncMono L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 4.14e-01 -0.0539 0.0658 0.407 ncMono L2
ENSG00000162512 SDC3 -409467 sc-eQTL 7.06e-01 0.0279 0.0739 0.407 ncMono L2
ENSG00000168528 SERINC2 -910274 sc-eQTL 4.83e-01 0.0566 0.0806 0.407 ncMono L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 1.23e-01 0.129 0.083 0.407 ncMono L2
ENSG00000060688 SNRNP40 -797497 sc-eQTL 2.94e-01 0.0976 0.0926 0.407 pDC L2
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 4.14e-01 -0.0833 0.102 0.407 pDC L2
ENSG00000134644 PUM1 -566700 sc-eQTL 2.13e-01 -0.105 0.0841 0.407 pDC L2
ENSG00000162511 LAPTM5 -258483 sc-eQTL 7.52e-01 -0.0249 0.0786 0.407 pDC L2
ENSG00000168528 SERINC2 -910274 sc-eQTL 4.83e-01 -0.0669 0.0952 0.407 pDC L2
ENSG00000287510 AL137857.1 -232402 sc-eQTL 6.84e-02 0.158 0.0861 0.407 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -797497 sc-eQTL 7.90e-01 -0.0248 0.0932 0.41 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 9.00e-01 0.00974 0.0776 0.41 B_Memory LOneK1K
ENSG00000134644 PUM1 -566700 sc-eQTL 4.67e-01 0.0501 0.0687 0.41 B_Memory LOneK1K
ENSG00000162510 MATN1 -224294 sc-eQTL 9.93e-01 0.000669 0.0784 0.41 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -258483 sc-eQTL 9.69e-01 -0.00194 0.0493 0.41 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 8.07e-01 0.0159 0.0651 0.41 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -232402 sc-eQTL 8.74e-01 0.0112 0.071 0.41 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -797497 sc-eQTL 3.53e-01 -0.0792 0.0851 0.41 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 7.19e-01 0.0243 0.0674 0.41 B_Naive LOneK1K
ENSG00000134644 PUM1 -566700 sc-eQTL 9.51e-01 0.00391 0.0638 0.41 B_Naive LOneK1K
ENSG00000162510 MATN1 -224294 sc-eQTL 6.75e-01 0.0257 0.0614 0.41 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -258483 sc-eQTL 7.71e-01 0.0126 0.0432 0.41 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 4.36e-02 0.112 0.0553 0.41 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -232402 sc-eQTL 5.41e-01 0.0406 0.0663 0.41 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -797497 sc-eQTL 8.12e-01 0.0175 0.0734 0.41 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 6.22e-03 -0.226 0.0817 0.41 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -566700 sc-eQTL 9.88e-01 -0.000825 0.0531 0.41 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -258483 sc-eQTL 8.84e-01 0.00682 0.0466 0.41 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -409467 sc-eQTL 6.00e-01 0.05 0.0951 0.41 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -910274 sc-eQTL 5.36e-02 0.188 0.097 0.41 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -232402 sc-eQTL 7.85e-01 0.0205 0.0751 0.41 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -797497 sc-eQTL 5.43e-01 0.0484 0.0795 0.409 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 3.08e-01 0.0888 0.0868 0.409 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -566700 sc-eQTL 2.14e-01 0.0885 0.071 0.409 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -258483 sc-eQTL 7.83e-01 -0.0158 0.057 0.409 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -409467 sc-eQTL 9.13e-01 0.00913 0.0833 0.409 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -910274 sc-eQTL 4.74e-01 0.0619 0.0863 0.409 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -232402 sc-eQTL 4.22e-01 0.066 0.082 0.409 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -797497 sc-eQTL 3.65e-01 0.0797 0.0878 0.409 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -797691 sc-eQTL 3.97e-01 0.051 0.06 0.409 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -566700 sc-eQTL 9.59e-01 -0.00342 0.0658 0.409 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -258483 sc-eQTL 4.57e-01 0.0547 0.0735 0.409 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -219213 sc-eQTL 6.31e-01 -0.0408 0.0848 0.409 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -232402 sc-eQTL 5.77e-01 0.0409 0.0732 0.409 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000229447 AC114495.2 -764390 eQTL 0.0319 0.0741 0.0345 0.0011 0.0 0.405

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina