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Genes within 1Mb (chr1:30476129:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -820659 sc-eQTL 6.18e-01 -0.0428 0.0857 0.333 B L1
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 3.34e-01 -0.0664 0.0686 0.333 B L1
ENSG00000134644 PUM1 -589862 sc-eQTL 8.39e-01 -0.0118 0.0576 0.333 B L1
ENSG00000162510 MATN1 -247456 sc-eQTL 8.26e-01 0.0133 0.0606 0.333 B L1
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.61e-01 0.0276 0.0474 0.333 B L1
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 1.42e-02 0.136 0.0548 0.333 B L1
ENSG00000287510 AL137857.1 -255564 sc-eQTL 6.27e-01 0.0321 0.0658 0.333 B L1
ENSG00000060688 SNRNP40 -820659 sc-eQTL 4.67e-01 -0.0545 0.0748 0.333 CD4T L1
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 9.86e-01 -0.00102 0.0585 0.333 CD4T L1
ENSG00000134644 PUM1 -589862 sc-eQTL 6.25e-01 -0.0255 0.0521 0.333 CD4T L1
ENSG00000162511 LAPTM5 -281645 sc-eQTL 7.16e-01 0.021 0.0577 0.333 CD4T L1
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 2.28e-01 0.0622 0.0515 0.333 CD4T L1
ENSG00000287510 AL137857.1 -255564 sc-eQTL 5.92e-01 -0.0332 0.0618 0.333 CD4T L1
ENSG00000060688 SNRNP40 -820659 sc-eQTL 7.31e-01 0.0334 0.0972 0.333 CD8T L1
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 5.94e-01 0.0345 0.0646 0.333 CD8T L1
ENSG00000134644 PUM1 -589862 sc-eQTL 9.03e-01 -0.00694 0.057 0.333 CD8T L1
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.10e-01 -0.0365 0.0553 0.333 CD8T L1
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 3.60e-01 0.0594 0.0647 0.333 CD8T L1
ENSG00000287510 AL137857.1 -255564 sc-eQTL 2.35e-01 0.0966 0.0812 0.333 CD8T L1
ENSG00000060688 SNRNP40 -820659 sc-eQTL 1.27e-01 0.13 0.0847 0.331 DC L1
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 5.26e-01 0.064 0.101 0.331 DC L1
ENSG00000134644 PUM1 -589862 sc-eQTL 7.59e-01 -0.0242 0.079 0.331 DC L1
ENSG00000162511 LAPTM5 -281645 sc-eQTL 8.06e-01 -0.0139 0.0564 0.331 DC L1
ENSG00000168528 SERINC2 -933436 sc-eQTL 2.91e-01 -0.0982 0.0928 0.331 DC L1
ENSG00000287510 AL137857.1 -255564 sc-eQTL 6.21e-01 0.0442 0.0892 0.331 DC L1
ENSG00000060688 SNRNP40 -820659 sc-eQTL 9.97e-01 0.000242 0.0669 0.333 Mono L1
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 7.51e-02 -0.147 0.0823 0.333 Mono L1
ENSG00000134644 PUM1 -589862 sc-eQTL 9.13e-01 -0.00582 0.0531 0.333 Mono L1
ENSG00000162511 LAPTM5 -281645 sc-eQTL 9.31e-01 0.00422 0.0489 0.333 Mono L1
ENSG00000162512 SDC3 -432629 sc-eQTL 4.99e-01 -0.0636 0.0939 0.333 Mono L1
ENSG00000168528 SERINC2 -933436 sc-eQTL 1.06e-01 0.162 0.1 0.333 Mono L1
ENSG00000287510 AL137857.1 -255564 sc-eQTL 7.68e-01 -0.0229 0.0776 0.333 Mono L1
ENSG00000060688 SNRNP40 -820659 sc-eQTL 2.12e-01 0.115 0.092 0.333 NK L1
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 2.20e-01 0.0775 0.063 0.333 NK L1
ENSG00000134644 PUM1 -589862 sc-eQTL 2.78e-01 -0.072 0.0661 0.333 NK L1
ENSG00000162511 LAPTM5 -281645 sc-eQTL 2.31e-01 0.0914 0.0761 0.333 NK L1
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 4.27e-01 0.0682 0.0856 0.333 NK L1
ENSG00000287510 AL137857.1 -255564 sc-eQTL 8.29e-01 0.0171 0.0792 0.333 NK L1
ENSG00000060688 SNRNP40 -820659 sc-eQTL 1.34e-01 -0.105 0.0696 0.333 Other_T L1
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 2.92e-01 -0.0788 0.0746 0.333 Other_T L1
ENSG00000134644 PUM1 -589862 sc-eQTL 5.03e-01 -0.0451 0.0672 0.333 Other_T L1
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.65e-01 0.0318 0.0551 0.333 Other_T L1
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 3.64e-01 -0.082 0.0901 0.333 Other_T L1
ENSG00000287510 AL137857.1 -255564 sc-eQTL 1.32e-01 0.141 0.0935 0.333 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -820659 sc-eQTL 1.67e-01 0.152 0.11 0.334 B_Activated L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 3.27e-01 0.109 0.111 0.334 B_Activated L2
ENSG00000134644 PUM1 -589862 sc-eQTL 2.24e-01 0.125 0.103 0.334 B_Activated L2
ENSG00000162510 MATN1 -247456 sc-eQTL 7.58e-01 0.0279 0.0902 0.334 B_Activated L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 9.57e-01 -0.00341 0.0629 0.334 B_Activated L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 8.89e-01 0.0142 0.102 0.334 B_Activated L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 9.76e-01 -0.00272 0.0899 0.334 B_Activated L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 6.24e-01 0.0515 0.105 0.333 B_Intermediate L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 1.88e-02 0.205 0.0864 0.333 B_Intermediate L2
ENSG00000134644 PUM1 -589862 sc-eQTL 8.67e-01 0.0139 0.0825 0.333 B_Intermediate L2
ENSG00000162510 MATN1 -247456 sc-eQTL 4.62e-01 0.0632 0.0858 0.333 B_Intermediate L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 3.26e-01 0.0517 0.0526 0.333 B_Intermediate L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 7.03e-01 0.0282 0.074 0.333 B_Intermediate L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 6.81e-01 -0.034 0.0828 0.333 B_Intermediate L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 8.65e-01 -0.0171 0.1 0.334 B_Memory L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 2.34e-01 -0.11 0.0919 0.334 B_Memory L2
ENSG00000134644 PUM1 -589862 sc-eQTL 5.84e-01 0.0439 0.0802 0.334 B_Memory L2
ENSG00000162510 MATN1 -247456 sc-eQTL 8.32e-01 -0.0163 0.0768 0.334 B_Memory L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.57e-01 0.04 0.068 0.334 B_Memory L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 8.95e-01 -0.0103 0.0779 0.334 B_Memory L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 8.35e-01 0.019 0.0912 0.334 B_Memory L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.67e-01 -0.0532 0.0926 0.333 B_Naive1 L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 8.76e-01 0.0126 0.08 0.333 B_Naive1 L2
ENSG00000134644 PUM1 -589862 sc-eQTL 8.91e-01 -0.00973 0.0706 0.333 B_Naive1 L2
ENSG00000162510 MATN1 -247456 sc-eQTL 8.47e-01 0.0138 0.0716 0.333 B_Naive1 L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.46e-01 0.0289 0.0478 0.333 B_Naive1 L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 1.25e-02 0.156 0.0619 0.333 B_Naive1 L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 7.45e-01 0.0253 0.0776 0.333 B_Naive1 L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 9.44e-01 0.00685 0.097 0.335 B_Naive2 L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 6.86e-01 0.0324 0.08 0.335 B_Naive2 L2
ENSG00000134644 PUM1 -589862 sc-eQTL 5.80e-01 -0.0434 0.0783 0.335 B_Naive2 L2
ENSG00000162510 MATN1 -247456 sc-eQTL 9.22e-01 0.00741 0.0752 0.335 B_Naive2 L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 8.18e-01 -0.0118 0.0511 0.335 B_Naive2 L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 4.89e-01 0.0515 0.0743 0.335 B_Naive2 L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 9.18e-01 -0.00832 0.0803 0.335 B_Naive2 L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 8.30e-01 -0.021 0.0979 0.33 CD4_CTL L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 3.52e-01 -0.0897 0.0961 0.33 CD4_CTL L2
ENSG00000134644 PUM1 -589862 sc-eQTL 9.23e-01 -0.00912 0.0944 0.33 CD4_CTL L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 8.21e-01 -0.019 0.0842 0.33 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 1.82e-01 -0.123 0.0917 0.33 CD4_CTL L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 8.88e-01 -0.0114 0.0813 0.33 CD4_CTL L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 3.10e-01 -0.079 0.0777 0.333 CD4_Naive L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 2.87e-01 0.0735 0.0689 0.333 CD4_Naive L2
ENSG00000134644 PUM1 -589862 sc-eQTL 6.96e-01 -0.0216 0.0551 0.333 CD4_Naive L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 7.74e-01 0.017 0.0591 0.333 CD4_Naive L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 2.40e-01 0.0705 0.0598 0.333 CD4_Naive L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 1.81e-01 -0.0921 0.0686 0.333 CD4_Naive L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 3.80e-01 0.0856 0.0974 0.333 CD4_TCM L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 3.30e-01 -0.0766 0.0784 0.333 CD4_TCM L2
ENSG00000134644 PUM1 -589862 sc-eQTL 3.21e-01 -0.0691 0.0694 0.333 CD4_TCM L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.83e-01 0.0317 0.0577 0.333 CD4_TCM L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 6.68e-01 0.0315 0.0732 0.333 CD4_TCM L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 3.29e-01 0.0797 0.0814 0.333 CD4_TCM L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 2.72e-01 -0.107 0.0971 0.333 CD4_TEM L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 4.99e-01 -0.0628 0.0927 0.333 CD4_TEM L2
ENSG00000134644 PUM1 -589862 sc-eQTL 2.99e-01 0.0802 0.0771 0.333 CD4_TEM L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 1.62e-01 -0.109 0.0778 0.333 CD4_TEM L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 9.43e-02 0.153 0.0909 0.333 CD4_TEM L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 4.88e-01 -0.0626 0.09 0.333 CD4_TEM L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.23e-01 -0.0663 0.104 0.333 CD8_CTL L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 1.82e-01 0.106 0.0792 0.333 CD8_CTL L2
ENSG00000134644 PUM1 -589862 sc-eQTL 6.28e-01 -0.0375 0.0772 0.333 CD8_CTL L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 4.11e-01 -0.0704 0.0854 0.333 CD8_CTL L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 9.65e-01 0.00391 0.09 0.333 CD8_CTL L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 3.68e-01 0.0761 0.0844 0.333 CD8_CTL L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 9.95e-01 0.000616 0.0972 0.333 CD8_Naive L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 6.01e-01 -0.0439 0.0838 0.333 CD8_Naive L2
ENSG00000134644 PUM1 -589862 sc-eQTL 3.78e-01 -0.0595 0.0673 0.333 CD8_Naive L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 9.01e-01 -0.00805 0.0646 0.333 CD8_Naive L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 8.69e-02 0.138 0.0801 0.333 CD8_Naive L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 5.67e-01 0.0503 0.0878 0.333 CD8_Naive L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 6.47e-01 -0.0486 0.106 0.34 CD8_TCM L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 7.42e-01 0.032 0.0971 0.34 CD8_TCM L2
ENSG00000134644 PUM1 -589862 sc-eQTL 9.52e-01 -0.00548 0.0913 0.34 CD8_TCM L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 6.25e-02 0.177 0.0947 0.34 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 3.29e-01 0.0863 0.0882 0.34 CD8_TCM L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 7.68e-02 -0.158 0.0887 0.34 CD8_TCM L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 2.06e-01 0.128 0.101 0.342 CD8_TEM L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 7.87e-01 -0.0263 0.0971 0.342 CD8_TEM L2
ENSG00000134644 PUM1 -589862 sc-eQTL 9.84e-01 0.002 0.0993 0.342 CD8_TEM L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 4.93e-01 -0.0641 0.0932 0.342 CD8_TEM L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 1.37e-01 0.144 0.0963 0.342 CD8_TEM L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 1.39e-02 0.214 0.0863 0.342 CD8_TEM L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.86e-01 -0.0568 0.104 0.333 MAIT L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 6.55e-01 0.0412 0.0922 0.333 MAIT L2
ENSG00000134644 PUM1 -589862 sc-eQTL 6.20e-01 0.0438 0.0884 0.333 MAIT L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 8.74e-01 -0.0133 0.0834 0.333 MAIT L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 1.43e-01 -0.136 0.0924 0.333 MAIT L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 3.10e-01 0.0971 0.0955 0.333 MAIT L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 7.11e-01 -0.0381 0.103 0.336 NK_CD56bright L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 9.32e-01 -0.00738 0.0868 0.336 NK_CD56bright L2
ENSG00000134644 PUM1 -589862 sc-eQTL 8.16e-01 0.0213 0.0912 0.336 NK_CD56bright L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 8.56e-02 0.154 0.0893 0.336 NK_CD56bright L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 5.17e-02 0.175 0.0895 0.336 NK_CD56bright L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 1.51e-01 0.128 0.0886 0.336 NK_CD56bright L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 7.60e-02 0.172 0.0964 0.332 NK_CD56dim L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 1.44e-01 0.105 0.0715 0.332 NK_CD56dim L2
ENSG00000134644 PUM1 -589862 sc-eQTL 1.17e-01 -0.115 0.0733 0.332 NK_CD56dim L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 2.37e-01 0.0928 0.0783 0.332 NK_CD56dim L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 9.29e-01 -0.00879 0.0985 0.332 NK_CD56dim L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 2.29e-01 -0.0977 0.081 0.332 NK_CD56dim L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.44e-01 -0.0621 0.102 0.336 NK_HLA L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 8.80e-02 0.155 0.0906 0.336 NK_HLA L2
ENSG00000134644 PUM1 -589862 sc-eQTL 3.55e-01 -0.0823 0.0887 0.336 NK_HLA L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 1.37e-01 0.126 0.0844 0.336 NK_HLA L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 4.44e-01 -0.0691 0.0902 0.336 NK_HLA L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 1.45e-01 -0.127 0.0868 0.336 NK_HLA L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 8.48e-01 0.0181 0.0945 0.332 NK_cytokine L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 2.06e-01 -0.0931 0.0735 0.332 NK_cytokine L2
ENSG00000134644 PUM1 -589862 sc-eQTL 4.12e-01 0.0655 0.0796 0.332 NK_cytokine L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 6.60e-01 0.0386 0.0878 0.332 NK_cytokine L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 2.10e-01 0.117 0.0927 0.332 NK_cytokine L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 5.19e-01 0.0559 0.0865 0.332 NK_cytokine L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 8.47e-01 -0.0211 0.109 0.304 PB L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 3.65e-01 -0.114 0.126 0.304 PB L2
ENSG00000134644 PUM1 -589862 sc-eQTL 2.37e-01 -0.13 0.109 0.304 PB L2
ENSG00000162510 MATN1 -247456 sc-eQTL 9.25e-01 -0.00959 0.102 0.304 PB L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 4.10e-01 -0.0603 0.0729 0.304 PB L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 4.79e-01 -0.0708 0.0998 0.304 PB L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 2.29e-01 -0.128 0.106 0.304 PB L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 7.48e-01 -0.0243 0.0757 0.335 Pro_T L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 7.18e-01 0.0347 0.0961 0.335 Pro_T L2
ENSG00000134644 PUM1 -589862 sc-eQTL 9.86e-01 0.0016 0.0896 0.335 Pro_T L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 2.75e-01 0.0702 0.0641 0.335 Pro_T L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 7.60e-01 0.0275 0.0898 0.335 Pro_T L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 1.46e-01 0.12 0.0822 0.335 Pro_T L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 4.42e-02 0.199 0.0982 0.333 Treg L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 3.79e-01 0.0843 0.0957 0.333 Treg L2
ENSG00000134644 PUM1 -589862 sc-eQTL 6.75e-01 0.0322 0.0767 0.333 Treg L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 9.39e-01 0.00678 0.0879 0.333 Treg L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 5.63e-02 -0.17 0.0888 0.333 Treg L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 8.01e-01 0.0226 0.0894 0.333 Treg L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 2.44e-01 0.117 0.1 0.322 cDC L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 8.35e-01 -0.0227 0.109 0.322 cDC L2
ENSG00000134644 PUM1 -589862 sc-eQTL 4.04e-01 0.0781 0.0933 0.322 cDC L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.13e-01 0.0429 0.0654 0.322 cDC L2
ENSG00000168528 SERINC2 -933436 sc-eQTL 2.46e-01 -0.0975 0.0838 0.322 cDC L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 6.04e-01 -0.0462 0.0889 0.322 cDC L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 6.71e-01 -0.0342 0.0804 0.333 cMono_IL1B L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 8.81e-03 -0.233 0.0883 0.333 cMono_IL1B L2
ENSG00000134644 PUM1 -589862 sc-eQTL 7.14e-01 0.0223 0.0607 0.333 cMono_IL1B L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.84e-01 0.0292 0.0533 0.333 cMono_IL1B L2
ENSG00000162512 SDC3 -432629 sc-eQTL 9.05e-01 -0.012 0.1 0.333 cMono_IL1B L2
ENSG00000168528 SERINC2 -933436 sc-eQTL 5.96e-02 0.191 0.101 0.333 cMono_IL1B L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 1.14e-01 -0.132 0.0833 0.333 cMono_IL1B L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 7.98e-01 -0.0216 0.0841 0.333 cMono_S100A L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 3.98e-01 -0.084 0.0992 0.333 cMono_S100A L2
ENSG00000134644 PUM1 -589862 sc-eQTL 3.57e-01 -0.0662 0.0717 0.333 cMono_S100A L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 6.13e-01 -0.028 0.0552 0.333 cMono_S100A L2
ENSG00000162512 SDC3 -432629 sc-eQTL 5.90e-01 -0.0515 0.0953 0.333 cMono_S100A L2
ENSG00000168528 SERINC2 -933436 sc-eQTL 2.69e-01 0.112 0.101 0.333 cMono_S100A L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 5.59e-01 0.0481 0.0823 0.333 cMono_S100A L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 2.13e-01 -0.157 0.125 0.361 gdT L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 7.11e-01 0.0401 0.108 0.361 gdT L2
ENSG00000134644 PUM1 -589862 sc-eQTL 2.65e-02 -0.245 0.109 0.361 gdT L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 9.97e-01 -0.000478 0.121 0.361 gdT L2
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 5.48e-01 -0.0672 0.112 0.361 gdT L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 9.55e-01 0.00613 0.108 0.361 gdT L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.92e-01 0.0497 0.0926 0.333 intMono L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 1.23e-01 0.153 0.099 0.333 intMono L2
ENSG00000134644 PUM1 -589862 sc-eQTL 1.29e-01 0.128 0.084 0.333 intMono L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 2.76e-01 0.0722 0.0661 0.333 intMono L2
ENSG00000162512 SDC3 -432629 sc-eQTL 8.98e-01 -0.0117 0.0908 0.333 intMono L2
ENSG00000168528 SERINC2 -933436 sc-eQTL 5.56e-01 0.0559 0.0949 0.333 intMono L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 2.24e-01 -0.109 0.0897 0.333 intMono L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 9.22e-01 0.00867 0.0882 0.33 ncMono L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 6.46e-01 -0.0432 0.0939 0.33 ncMono L2
ENSG00000134644 PUM1 -589862 sc-eQTL 1.58e-01 0.108 0.0764 0.33 ncMono L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 6.83e-01 -0.0285 0.0697 0.33 ncMono L2
ENSG00000162512 SDC3 -432629 sc-eQTL 8.50e-01 -0.0148 0.0782 0.33 ncMono L2
ENSG00000168528 SERINC2 -933436 sc-eQTL 7.96e-01 0.0221 0.0853 0.33 ncMono L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 4.07e-01 0.0734 0.0883 0.33 ncMono L2
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.69e-01 0.0571 0.0999 0.336 pDC L2
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 5.64e-01 -0.0634 0.11 0.336 pDC L2
ENSG00000134644 PUM1 -589862 sc-eQTL 2.42e-01 -0.106 0.0906 0.336 pDC L2
ENSG00000162511 LAPTM5 -281645 sc-eQTL 7.47e-01 0.0274 0.0846 0.336 pDC L2
ENSG00000168528 SERINC2 -933436 sc-eQTL 4.82e-01 -0.0722 0.102 0.336 pDC L2
ENSG00000287510 AL137857.1 -255564 sc-eQTL 2.40e-01 0.11 0.0933 0.336 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000060688 SNRNP40 -820659 sc-eQTL 8.54e-01 0.0182 0.0989 0.333 B_Memory LOneK1K
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 4.89e-01 0.0571 0.0822 0.333 B_Memory LOneK1K
ENSG00000134644 PUM1 -589862 sc-eQTL 2.01e-01 0.0931 0.0727 0.333 B_Memory LOneK1K
ENSG00000162510 MATN1 -247456 sc-eQTL 3.10e-01 0.0844 0.083 0.333 B_Memory LOneK1K
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.51e-01 0.0312 0.0522 0.333 B_Memory LOneK1K
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 7.60e-01 0.0211 0.0691 0.333 B_Memory LOneK1K
ENSG00000287510 AL137857.1 -255564 sc-eQTL 9.98e-01 0.000158 0.0753 0.333 B_Memory LOneK1K
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.87e-01 -0.0491 0.0904 0.333 B_Naive LOneK1K
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 9.70e-01 -0.00272 0.0715 0.333 B_Naive LOneK1K
ENSG00000134644 PUM1 -589862 sc-eQTL 2.45e-01 -0.0786 0.0674 0.333 B_Naive LOneK1K
ENSG00000162510 MATN1 -247456 sc-eQTL 6.86e-01 0.0264 0.0651 0.333 B_Naive LOneK1K
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.19e-01 0.0296 0.0458 0.333 B_Naive LOneK1K
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 1.98e-02 0.137 0.0585 0.333 B_Naive LOneK1K
ENSG00000287510 AL137857.1 -255564 sc-eQTL 9.90e-01 0.000841 0.0703 0.333 B_Naive LOneK1K
ENSG00000060688 SNRNP40 -820659 sc-eQTL 7.70e-01 -0.0224 0.0764 0.333 CD14_Mono LOneK1K
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 1.45e-02 -0.21 0.0854 0.333 CD14_Mono LOneK1K
ENSG00000134644 PUM1 -589862 sc-eQTL 7.13e-01 -0.0204 0.0552 0.333 CD14_Mono LOneK1K
ENSG00000162511 LAPTM5 -281645 sc-eQTL 9.56e-01 -0.00271 0.0485 0.333 CD14_Mono LOneK1K
ENSG00000162512 SDC3 -432629 sc-eQTL 9.81e-01 0.00232 0.099 0.333 CD14_Mono LOneK1K
ENSG00000168528 SERINC2 -933436 sc-eQTL 1.09e-01 0.163 0.101 0.333 CD14_Mono LOneK1K
ENSG00000287510 AL137857.1 -255564 sc-eQTL 4.64e-01 -0.0573 0.0781 0.333 CD14_Mono LOneK1K
ENSG00000060688 SNRNP40 -820659 sc-eQTL 5.38e-01 0.0514 0.0834 0.332 CD16_Mono LOneK1K
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 9.04e-01 0.0111 0.0914 0.332 CD16_Mono LOneK1K
ENSG00000134644 PUM1 -589862 sc-eQTL 3.58e-01 0.0688 0.0747 0.332 CD16_Mono LOneK1K
ENSG00000162511 LAPTM5 -281645 sc-eQTL 5.80e-01 0.0331 0.0598 0.332 CD16_Mono LOneK1K
ENSG00000162512 SDC3 -432629 sc-eQTL 6.57e-01 -0.0388 0.0874 0.332 CD16_Mono LOneK1K
ENSG00000168528 SERINC2 -933436 sc-eQTL 6.52e-01 0.0409 0.0907 0.332 CD16_Mono LOneK1K
ENSG00000287510 AL137857.1 -255564 sc-eQTL 8.03e-01 0.0215 0.0862 0.332 CD16_Mono LOneK1K
ENSG00000060688 SNRNP40 -820659 sc-eQTL 1.41e-01 0.136 0.0922 0.332 NK_CD56dim LOneK1K
ENSG00000121766 ZCCHC17 -820853 sc-eQTL 2.55e-01 0.072 0.0631 0.332 NK_CD56dim LOneK1K
ENSG00000134644 PUM1 -589862 sc-eQTL 2.90e-01 -0.0734 0.0692 0.332 NK_CD56dim LOneK1K
ENSG00000162511 LAPTM5 -281645 sc-eQTL 3.50e-01 0.0725 0.0773 0.332 NK_CD56dim LOneK1K
ENSG00000186056 MATN1-AS1 -242375 sc-eQTL 5.33e-01 0.0558 0.0893 0.332 NK_CD56dim LOneK1K
ENSG00000287510 AL137857.1 -255564 sc-eQTL 5.91e-01 -0.0415 0.0771 0.332 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168528 SERINC2 -933436 eQTL 0.046 0.0788 0.0394 0.0 0.0 0.336

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000168528 SERINC2 -933436 2.69e-07 1.19e-07 4.08e-08 1.82e-07 9.16e-08 1e-07 1.44e-07 5.4e-08 1.45e-07 4.74e-08 1.62e-07 8.59e-08 1.41e-07 6.56e-08 5.99e-08 7.3e-08 3.87e-08 1.26e-07 5.39e-08 4e-08 1.08e-07 1.28e-07 1.34e-07 3.42e-08 1.37e-07 1.14e-07 1.06e-07 9.57e-08 1.08e-07 1.07e-07 9.64e-08 3.64e-08 3.35e-08 8.44e-08 8.38e-08 3.95e-08 5.05e-08 9.36e-08 6.56e-08 3.37e-08 4.39e-08 1.35e-07 5.27e-08 1.35e-08 5.43e-08 1.99e-08 1.19e-07 3.81e-09 4.94e-08