logo

Genes within 1Mb (chr1:29986950:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 805050 sc-eQTL 2.49e-01 0.21 0.181 0.052 DC L1
ENSG00000116353 MECR 756008 sc-eQTL 5.50e-01 0.12 0.201 0.052 DC L1
ENSG00000162511 LAPTM5 -770824 sc-eQTL 7.82e-01 0.032 0.116 0.052 DC L1
ENSG00000287510 AL137857.1 -744743 sc-eQTL 9.74e-01 0.00598 0.183 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 805050 sc-eQTL 5.59e-01 0.111 0.189 0.052 CD4_CTL L2
ENSG00000116353 MECR 756008 sc-eQTL 4.65e-01 0.14 0.192 0.052 CD4_CTL L2
ENSG00000162511 LAPTM5 -770824 sc-eQTL 6.30e-01 0.083 0.172 0.052 CD4_CTL L2
ENSG00000186056 MATN1-AS1 -731554 sc-eQTL 9.32e-01 -0.016 0.188 0.052 CD4_CTL L2
ENSG00000287510 AL137857.1 -744743 sc-eQTL 8.62e-01 -0.029 0.166 0.052 CD4_CTL L2
ENSG00000116350 SRSF4 805050 sc-eQTL 5.38e-01 0.122 0.198 0.051 CD8_TCM L2
ENSG00000116353 MECR 756008 sc-eQTL 4.88e-02 -0.387 0.195 0.051 CD8_TCM L2
ENSG00000162511 LAPTM5 -770824 sc-eQTL 9.30e-01 -0.0171 0.193 0.051 CD8_TCM L2
ENSG00000186056 MATN1-AS1 -731554 sc-eQTL 6.80e-01 -0.0737 0.179 0.051 CD8_TCM L2
ENSG00000287510 AL137857.1 -744743 sc-eQTL 2.53e-02 -0.402 0.178 0.051 CD8_TCM L2
ENSG00000116350 SRSF4 805050 sc-eQTL 5.22e-01 -0.124 0.193 0.05 NK_HLA L2
ENSG00000116353 MECR 756008 sc-eQTL 2.24e-01 -0.236 0.194 0.05 NK_HLA L2
ENSG00000162511 LAPTM5 -770824 sc-eQTL 2.10e-01 0.216 0.172 0.05 NK_HLA L2
ENSG00000186056 MATN1-AS1 -731554 sc-eQTL 6.04e-01 0.0954 0.184 0.05 NK_HLA L2
ENSG00000287510 AL137857.1 -744743 sc-eQTL 7.53e-01 -0.056 0.178 0.05 NK_HLA L2
ENSG00000116350 SRSF4 805050 sc-eQTL 7.92e-01 0.0656 0.248 0.052 PB L2
ENSG00000116353 MECR 756008 sc-eQTL 7.06e-01 0.0845 0.223 0.052 PB L2
ENSG00000162510 MATN1 -736635 sc-eQTL 5.29e-01 0.142 0.225 0.052 PB L2
ENSG00000162511 LAPTM5 -770824 sc-eQTL 9.24e-01 -0.0154 0.161 0.052 PB L2
ENSG00000186056 MATN1-AS1 -731554 sc-eQTL 9.84e-01 0.00433 0.221 0.052 PB L2
ENSG00000287510 AL137857.1 -744743 sc-eQTL 4.67e-01 -0.171 0.234 0.052 PB L2
ENSG00000116350 SRSF4 805050 sc-eQTL 5.52e-01 0.0965 0.162 0.05 Pro_T L2
ENSG00000116353 MECR 756008 sc-eQTL 7.30e-01 -0.0572 0.166 0.05 Pro_T L2
ENSG00000162511 LAPTM5 -770824 sc-eQTL 9.72e-01 0.00457 0.129 0.05 Pro_T L2
ENSG00000186056 MATN1-AS1 -731554 sc-eQTL 6.66e-01 0.0781 0.181 0.05 Pro_T L2
ENSG00000287510 AL137857.1 -744743 sc-eQTL 7.95e-01 -0.0432 0.166 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR 756008 pQTL 0.0321 0.0566 0.0264 0.0 0.0 0.0408
ENSG00000162511 LAPTM5 -770824 eQTL 0.0302 0.0522 0.024 0.0 0.0 0.0432
ENSG00000186056 MATN1-AS1 -731554 eQTL 1.03e-03 0.0994 0.0302 0.00521 0.00115 0.0432

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000186056 MATN1-AS1 -731554 3.27e-07 1.53e-07 6.26e-08 2.24e-07 9.82e-08 8.33e-08 2.24e-07 5.82e-08 1.85e-07 9.35e-08 1.76e-07 1.31e-07 2.38e-07 8e-08 5.69e-08 9.11e-08 4.45e-08 1.8e-07 7.18e-08 5.35e-08 1.22e-07 1.65e-07 1.68e-07 3.58e-08 2.28e-07 1.39e-07 1.2e-07 1.17e-07 1.37e-07 1.17e-07 1.26e-07 3.93e-08 3.38e-08 9.81e-08 3.36e-08 2.68e-08 5.42e-08 8.68e-08 6.39e-08 5.13e-08 5.04e-08 1.6e-07 5.12e-08 1.2e-08 3.32e-08 1.68e-08 9.29e-08 1.9e-09 4.81e-08