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Genes within 1Mb (chr1:29718355:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 536455 sc-eQTL 9.63e-01 0.00321 0.0701 0.774 B L1
ENSG00000116353 MECR 487413 sc-eQTL 3.04e-01 0.0857 0.0832 0.774 B L1
ENSG00000159023 EPB41 831264 sc-eQTL 5.00e-01 0.0445 0.0658 0.774 B L1
ENSG00000198492 YTHDF2 981734 sc-eQTL 7.45e-01 -0.0214 0.0659 0.774 B L1
ENSG00000116350 SRSF4 536455 sc-eQTL 2.27e-01 -0.0812 0.067 0.774 CD4T L1
ENSG00000116353 MECR 487413 sc-eQTL 8.58e-01 -0.0168 0.0936 0.774 CD4T L1
ENSG00000159023 EPB41 831264 sc-eQTL 1.53e-01 0.0752 0.0525 0.774 CD4T L1
ENSG00000198492 YTHDF2 981734 sc-eQTL 9.84e-01 0.00122 0.0592 0.774 CD4T L1
ENSG00000116350 SRSF4 536455 sc-eQTL 6.28e-01 -0.0358 0.0738 0.774 CD8T L1
ENSG00000116353 MECR 487413 sc-eQTL 9.99e-02 -0.163 0.0984 0.774 CD8T L1
ENSG00000159023 EPB41 831264 sc-eQTL 7.85e-01 0.0164 0.0602 0.774 CD8T L1
ENSG00000198492 YTHDF2 981734 sc-eQTL 8.36e-01 0.0151 0.0726 0.774 CD8T L1
ENSG00000116350 SRSF4 536455 sc-eQTL 8.61e-01 -0.0171 0.0977 0.766 DC L1
ENSG00000116353 MECR 487413 sc-eQTL 2.79e-01 -0.117 0.107 0.766 DC L1
ENSG00000159023 EPB41 831264 sc-eQTL 3.96e-01 -0.0816 0.0959 0.766 DC L1
ENSG00000198492 YTHDF2 981734 sc-eQTL 9.11e-01 0.0086 0.0768 0.766 DC L1
ENSG00000116350 SRSF4 536455 sc-eQTL 3.67e-01 -0.0637 0.0705 0.774 Mono L1
ENSG00000116353 MECR 487413 sc-eQTL 8.98e-03 -0.27 0.102 0.774 Mono L1
ENSG00000159023 EPB41 831264 sc-eQTL 1.50e-01 -0.114 0.0791 0.774 Mono L1
ENSG00000198492 YTHDF2 981734 sc-eQTL 4.38e-01 0.0604 0.0777 0.774 Mono L1
ENSG00000116350 SRSF4 536455 sc-eQTL 4.90e-01 -0.0526 0.076 0.773 NK L1
ENSG00000116353 MECR 487413 sc-eQTL 7.27e-01 0.035 0.1 0.773 NK L1
ENSG00000159023 EPB41 831264 sc-eQTL 8.44e-02 -0.117 0.0677 0.773 NK L1
ENSG00000198492 YTHDF2 981734 sc-eQTL 3.25e-01 0.0782 0.0794 0.773 NK L1
ENSG00000116350 SRSF4 536455 sc-eQTL 7.30e-01 0.0264 0.0764 0.774 Other_T L1
ENSG00000116353 MECR 487413 sc-eQTL 9.82e-01 -0.00202 0.0906 0.774 Other_T L1
ENSG00000159023 EPB41 831264 sc-eQTL 2.84e-01 0.0881 0.082 0.774 Other_T L1
ENSG00000198492 YTHDF2 981734 sc-eQTL 9.06e-01 0.00966 0.0816 0.774 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 536455 sc-eQTL 8.39e-01 -0.0241 0.119 0.776 B_Activated L2
ENSG00000116353 MECR 487413 sc-eQTL 8.72e-01 0.0172 0.107 0.776 B_Activated L2
ENSG00000159023 EPB41 831264 sc-eQTL 2.06e-01 0.133 0.105 0.776 B_Activated L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 5.61e-01 0.0698 0.12 0.776 B_Activated L2
ENSG00000116350 SRSF4 536455 sc-eQTL 6.01e-02 0.17 0.0899 0.775 B_Intermediate L2
ENSG00000116353 MECR 487413 sc-eQTL 1.03e-01 -0.172 0.105 0.775 B_Intermediate L2
ENSG00000159023 EPB41 831264 sc-eQTL 4.31e-01 0.0657 0.0833 0.775 B_Intermediate L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 8.65e-01 -0.0157 0.0925 0.775 B_Intermediate L2
ENSG00000116350 SRSF4 536455 sc-eQTL 4.15e-01 0.0773 0.0947 0.774 B_Memory L2
ENSG00000116353 MECR 487413 sc-eQTL 7.43e-01 0.0351 0.107 0.774 B_Memory L2
ENSG00000159023 EPB41 831264 sc-eQTL 6.69e-01 0.0388 0.0905 0.774 B_Memory L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 4.11e-01 -0.084 0.102 0.774 B_Memory L2
ENSG00000116350 SRSF4 536455 sc-eQTL 6.16e-01 0.0407 0.081 0.774 B_Naive1 L2
ENSG00000116353 MECR 487413 sc-eQTL 1.48e-01 0.154 0.106 0.774 B_Naive1 L2
ENSG00000159023 EPB41 831264 sc-eQTL 6.02e-01 0.0397 0.0761 0.774 B_Naive1 L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 7.00e-01 0.0348 0.0901 0.774 B_Naive1 L2
ENSG00000116350 SRSF4 536455 sc-eQTL 1.40e-01 -0.136 0.0916 0.775 B_Naive2 L2
ENSG00000116353 MECR 487413 sc-eQTL 1.38e-01 0.159 0.107 0.775 B_Naive2 L2
ENSG00000159023 EPB41 831264 sc-eQTL 3.24e-01 0.0931 0.0941 0.775 B_Naive2 L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 4.67e-01 -0.0755 0.104 0.775 B_Naive2 L2
ENSG00000116350 SRSF4 536455 sc-eQTL 1.42e-01 0.15 0.102 0.768 CD4_CTL L2
ENSG00000116353 MECR 487413 sc-eQTL 5.86e-01 -0.0565 0.104 0.768 CD4_CTL L2
ENSG00000159023 EPB41 831264 sc-eQTL 3.45e-01 0.0974 0.103 0.768 CD4_CTL L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 1.81e-01 -0.127 0.0948 0.768 CD4_CTL L2
ENSG00000116350 SRSF4 536455 sc-eQTL 5.36e-01 -0.0429 0.0691 0.774 CD4_Naive L2
ENSG00000116353 MECR 487413 sc-eQTL 8.56e-01 0.0181 0.0994 0.774 CD4_Naive L2
ENSG00000159023 EPB41 831264 sc-eQTL 8.81e-02 0.0897 0.0524 0.774 CD4_Naive L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 7.44e-01 0.0199 0.0607 0.774 CD4_Naive L2
ENSG00000116350 SRSF4 536455 sc-eQTL 9.11e-02 -0.136 0.0801 0.774 CD4_TCM L2
ENSG00000116353 MECR 487413 sc-eQTL 3.29e-01 -0.106 0.108 0.774 CD4_TCM L2
ENSG00000159023 EPB41 831264 sc-eQTL 5.57e-01 0.0358 0.0609 0.774 CD4_TCM L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 4.79e-01 -0.0565 0.0797 0.774 CD4_TCM L2
ENSG00000116350 SRSF4 536455 sc-eQTL 5.14e-01 -0.0646 0.0987 0.774 CD4_TEM L2
ENSG00000116353 MECR 487413 sc-eQTL 9.54e-01 0.00628 0.109 0.774 CD4_TEM L2
ENSG00000159023 EPB41 831264 sc-eQTL 5.61e-01 -0.0473 0.0813 0.774 CD4_TEM L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 6.08e-01 -0.0486 0.0945 0.774 CD4_TEM L2
ENSG00000116350 SRSF4 536455 sc-eQTL 6.84e-01 -0.0357 0.0876 0.774 CD8_CTL L2
ENSG00000116353 MECR 487413 sc-eQTL 2.17e-01 -0.127 0.103 0.774 CD8_CTL L2
ENSG00000159023 EPB41 831264 sc-eQTL 8.10e-01 0.0189 0.0786 0.774 CD8_CTL L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 1.34e-01 0.138 0.092 0.774 CD8_CTL L2
ENSG00000116350 SRSF4 536455 sc-eQTL 6.44e-01 -0.0428 0.0925 0.774 CD8_Naive L2
ENSG00000116353 MECR 487413 sc-eQTL 1.99e-01 -0.131 0.101 0.774 CD8_Naive L2
ENSG00000159023 EPB41 831264 sc-eQTL 3.39e-01 0.0669 0.0698 0.774 CD8_Naive L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 6.33e-01 0.0359 0.0752 0.774 CD8_Naive L2
ENSG00000116350 SRSF4 536455 sc-eQTL 3.17e-01 -0.108 0.108 0.771 CD8_TCM L2
ENSG00000116353 MECR 487413 sc-eQTL 3.85e-01 0.0934 0.107 0.771 CD8_TCM L2
ENSG00000159023 EPB41 831264 sc-eQTL 9.67e-01 -0.00337 0.0812 0.771 CD8_TCM L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 6.49e-01 0.0458 0.101 0.771 CD8_TCM L2
ENSG00000116350 SRSF4 536455 sc-eQTL 5.10e-01 -0.0678 0.103 0.769 CD8_TEM L2
ENSG00000116353 MECR 487413 sc-eQTL 8.68e-01 0.0181 0.109 0.769 CD8_TEM L2
ENSG00000159023 EPB41 831264 sc-eQTL 2.55e-01 -0.123 0.108 0.769 CD8_TEM L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 6.35e-02 -0.202 0.108 0.769 CD8_TEM L2
ENSG00000116350 SRSF4 536455 sc-eQTL 6.28e-01 0.048 0.099 0.775 MAIT L2
ENSG00000116353 MECR 487413 sc-eQTL 9.75e-01 -0.00345 0.111 0.775 MAIT L2
ENSG00000159023 EPB41 831264 sc-eQTL 6.76e-01 -0.0392 0.0936 0.775 MAIT L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 7.27e-01 -0.0349 0.0997 0.775 MAIT L2
ENSG00000116350 SRSF4 536455 sc-eQTL 7.67e-01 0.0321 0.108 0.773 NK_CD56bright L2
ENSG00000116353 MECR 487413 sc-eQTL 9.11e-01 -0.012 0.108 0.773 NK_CD56bright L2
ENSG00000159023 EPB41 831264 sc-eQTL 5.54e-01 0.0562 0.0947 0.773 NK_CD56bright L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 4.51e-01 0.0814 0.108 0.773 NK_CD56bright L2
ENSG00000116350 SRSF4 536455 sc-eQTL 8.83e-01 -0.0116 0.0785 0.774 NK_CD56dim L2
ENSG00000116353 MECR 487413 sc-eQTL 1.50e-01 0.154 0.106 0.774 NK_CD56dim L2
ENSG00000159023 EPB41 831264 sc-eQTL 7.51e-02 -0.132 0.0739 0.774 NK_CD56dim L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 8.83e-01 -0.0135 0.0916 0.774 NK_CD56dim L2
ENSG00000116350 SRSF4 536455 sc-eQTL 1.45e-01 -0.152 0.104 0.769 NK_HLA L2
ENSG00000116353 MECR 487413 sc-eQTL 2.65e-01 -0.116 0.104 0.769 NK_HLA L2
ENSG00000159023 EPB41 831264 sc-eQTL 3.12e-02 -0.21 0.097 0.769 NK_HLA L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 5.52e-01 0.0653 0.11 0.769 NK_HLA L2
ENSG00000116350 SRSF4 536455 sc-eQTL 5.75e-01 -0.049 0.0874 0.774 NK_cytokine L2
ENSG00000116353 MECR 487413 sc-eQTL 2.89e-01 -0.115 0.108 0.774 NK_cytokine L2
ENSG00000159023 EPB41 831264 sc-eQTL 2.92e-01 -0.0883 0.0835 0.774 NK_cytokine L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 3.45e-01 0.0905 0.0957 0.774 NK_cytokine L2
ENSG00000116350 SRSF4 536455 sc-eQTL 7.66e-02 -0.25 0.14 0.826 PB L2
ENSG00000116353 MECR 487413 sc-eQTL 9.15e-01 0.0137 0.128 0.826 PB L2
ENSG00000159023 EPB41 831264 sc-eQTL 1.02e-01 -0.234 0.142 0.826 PB L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 5.38e-01 -0.0752 0.122 0.826 PB L2
ENSG00000116350 SRSF4 536455 sc-eQTL 5.11e-02 -0.171 0.0873 0.772 Pro_T L2
ENSG00000116353 MECR 487413 sc-eQTL 2.27e-02 -0.204 0.0889 0.772 Pro_T L2
ENSG00000159023 EPB41 831264 sc-eQTL 5.87e-01 -0.0498 0.0917 0.772 Pro_T L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 6.92e-01 -0.036 0.0907 0.772 Pro_T L2
ENSG00000116350 SRSF4 536455 sc-eQTL 7.84e-01 -0.0261 0.0952 0.774 Treg L2
ENSG00000116353 MECR 487413 sc-eQTL 5.46e-01 -0.0694 0.115 0.774 Treg L2
ENSG00000159023 EPB41 831264 sc-eQTL 7.37e-01 0.0269 0.08 0.774 Treg L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 6.90e-01 -0.0424 0.106 0.774 Treg L2
ENSG00000116350 SRSF4 536455 sc-eQTL 6.12e-01 0.0514 0.101 0.766 cDC L2
ENSG00000116353 MECR 487413 sc-eQTL 6.39e-01 -0.0532 0.113 0.766 cDC L2
ENSG00000159023 EPB41 831264 sc-eQTL 3.80e-01 -0.0839 0.0953 0.766 cDC L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 8.70e-01 -0.0158 0.0967 0.766 cDC L2
ENSG00000116350 SRSF4 536455 sc-eQTL 7.47e-01 -0.0276 0.0855 0.774 cMono_IL1B L2
ENSG00000116353 MECR 487413 sc-eQTL 3.66e-02 -0.22 0.105 0.774 cMono_IL1B L2
ENSG00000159023 EPB41 831264 sc-eQTL 7.41e-01 -0.0256 0.0773 0.774 cMono_IL1B L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 9.01e-01 -0.00999 0.0802 0.774 cMono_IL1B L2
ENSG00000116350 SRSF4 536455 sc-eQTL 6.65e-02 -0.148 0.08 0.774 cMono_S100A L2
ENSG00000116353 MECR 487413 sc-eQTL 3.97e-02 -0.218 0.105 0.774 cMono_S100A L2
ENSG00000159023 EPB41 831264 sc-eQTL 3.16e-01 -0.0979 0.0974 0.774 cMono_S100A L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 2.01e-01 0.138 0.108 0.774 cMono_S100A L2
ENSG00000116350 SRSF4 536455 sc-eQTL 9.43e-01 0.00906 0.126 0.758 gdT L2
ENSG00000116353 MECR 487413 sc-eQTL 9.98e-01 0.000358 0.126 0.758 gdT L2
ENSG00000159023 EPB41 831264 sc-eQTL 9.07e-01 0.0129 0.11 0.758 gdT L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 9.75e-02 -0.204 0.122 0.758 gdT L2
ENSG00000116350 SRSF4 536455 sc-eQTL 3.37e-01 -0.0954 0.0991 0.771 intMono L2
ENSG00000116353 MECR 487413 sc-eQTL 7.80e-02 0.185 0.105 0.771 intMono L2
ENSG00000159023 EPB41 831264 sc-eQTL 7.00e-01 0.0397 0.103 0.771 intMono L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 8.52e-01 0.0206 0.11 0.771 intMono L2
ENSG00000116350 SRSF4 536455 sc-eQTL 3.33e-01 0.098 0.101 0.762 ncMono L2
ENSG00000116353 MECR 487413 sc-eQTL 1.70e-01 -0.15 0.109 0.762 ncMono L2
ENSG00000159023 EPB41 831264 sc-eQTL 3.11e-01 -0.111 0.109 0.762 ncMono L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 4.00e-01 -0.0871 0.103 0.762 ncMono L2
ENSG00000116350 SRSF4 536455 sc-eQTL 3.26e-01 -0.118 0.12 0.782 pDC L2
ENSG00000116353 MECR 487413 sc-eQTL 8.41e-01 -0.0248 0.123 0.782 pDC L2
ENSG00000159023 EPB41 831264 sc-eQTL 9.44e-01 0.00823 0.118 0.782 pDC L2
ENSG00000198492 YTHDF2 981734 sc-eQTL 6.43e-01 0.0435 0.0937 0.782 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 536455 sc-eQTL 3.95e-02 0.172 0.0828 0.774 B_Memory LOneK1K
ENSG00000116353 MECR 487413 sc-eQTL 4.90e-01 -0.0714 0.103 0.774 B_Memory LOneK1K
ENSG00000159023 EPB41 831264 sc-eQTL 4.34e-01 0.0579 0.0739 0.774 B_Memory LOneK1K
ENSG00000198492 YTHDF2 981734 sc-eQTL 7.20e-01 -0.031 0.0865 0.774 B_Memory LOneK1K
ENSG00000116350 SRSF4 536455 sc-eQTL 5.11e-01 -0.05 0.0761 0.774 B_Naive LOneK1K
ENSG00000116353 MECR 487413 sc-eQTL 7.76e-02 0.175 0.0986 0.774 B_Naive LOneK1K
ENSG00000159023 EPB41 831264 sc-eQTL 4.30e-01 0.0574 0.0727 0.774 B_Naive LOneK1K
ENSG00000198492 YTHDF2 981734 sc-eQTL 9.00e-01 -0.0108 0.0857 0.774 B_Naive LOneK1K
ENSG00000116350 SRSF4 536455 sc-eQTL 3.75e-01 -0.0686 0.0772 0.774 CD14_Mono LOneK1K
ENSG00000116353 MECR 487413 sc-eQTL 3.92e-03 -0.296 0.101 0.774 CD14_Mono LOneK1K
ENSG00000159023 EPB41 831264 sc-eQTL 1.91e-01 -0.101 0.0765 0.774 CD14_Mono LOneK1K
ENSG00000198492 YTHDF2 981734 sc-eQTL 2.91e-01 0.0868 0.0821 0.774 CD14_Mono LOneK1K
ENSG00000116350 SRSF4 536455 sc-eQTL 7.82e-01 0.0249 0.0901 0.772 CD16_Mono LOneK1K
ENSG00000116353 MECR 487413 sc-eQTL 5.91e-01 -0.0552 0.103 0.772 CD16_Mono LOneK1K
ENSG00000159023 EPB41 831264 sc-eQTL 7.05e-01 -0.0395 0.104 0.772 CD16_Mono LOneK1K
ENSG00000198492 YTHDF2 981734 sc-eQTL 9.34e-01 -0.0087 0.105 0.772 CD16_Mono LOneK1K
ENSG00000116350 SRSF4 536455 sc-eQTL 5.23e-01 -0.0478 0.0746 0.774 NK_CD56dim LOneK1K
ENSG00000116353 MECR 487413 sc-eQTL 5.82e-01 0.0567 0.103 0.774 NK_CD56dim LOneK1K
ENSG00000159023 EPB41 831264 sc-eQTL 3.10e-02 -0.151 0.0694 0.774 NK_CD56dim LOneK1K
ENSG00000198492 YTHDF2 981734 sc-eQTL 5.05e-01 0.0535 0.0801 0.774 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060656 PTPRU 481839 eQTL 4.75e-03 0.0988 0.0349 0.00177 0.0 0.197

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina