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Genes within 1Mb (chr1:29676719:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 494819 sc-eQTL 6.06e-01 -0.0328 0.0635 0.66 B L1
ENSG00000116353 MECR 445777 sc-eQTL 8.72e-01 0.0122 0.0757 0.66 B L1
ENSG00000159023 EPB41 789628 sc-eQTL 9.30e-01 -0.00525 0.0597 0.66 B L1
ENSG00000198492 YTHDF2 940098 sc-eQTL 3.80e-02 0.123 0.0591 0.66 B L1
ENSG00000116350 SRSF4 494819 sc-eQTL 2.06e-01 -0.0769 0.0606 0.66 CD4T L1
ENSG00000116353 MECR 445777 sc-eQTL 1.08e-01 -0.136 0.0842 0.66 CD4T L1
ENSG00000159023 EPB41 789628 sc-eQTL 7.18e-02 -0.0857 0.0474 0.66 CD4T L1
ENSG00000198492 YTHDF2 940098 sc-eQTL 8.49e-01 -0.0102 0.0536 0.66 CD4T L1
ENSG00000116350 SRSF4 494819 sc-eQTL 5.31e-02 -0.13 0.0667 0.66 CD8T L1
ENSG00000116353 MECR 445777 sc-eQTL 3.73e-01 -0.0804 0.09 0.66 CD8T L1
ENSG00000159023 EPB41 789628 sc-eQTL 3.00e-01 -0.0569 0.0547 0.66 CD8T L1
ENSG00000198492 YTHDF2 940098 sc-eQTL 5.99e-01 0.0348 0.0661 0.66 CD8T L1
ENSG00000116350 SRSF4 494819 sc-eQTL 6.05e-01 0.0472 0.091 0.658 DC L1
ENSG00000116353 MECR 445777 sc-eQTL 1.95e-01 -0.13 0.1 0.658 DC L1
ENSG00000159023 EPB41 789628 sc-eQTL 4.82e-01 0.0629 0.0894 0.658 DC L1
ENSG00000198492 YTHDF2 940098 sc-eQTL 4.95e-01 0.0489 0.0715 0.658 DC L1
ENSG00000116350 SRSF4 494819 sc-eQTL 2.21e-01 -0.0765 0.0623 0.66 Mono L1
ENSG00000116353 MECR 445777 sc-eQTL 8.37e-01 -0.0189 0.092 0.66 Mono L1
ENSG00000159023 EPB41 789628 sc-eQTL 4.60e-01 -0.052 0.0702 0.66 Mono L1
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.22e-02 0.116 0.0684 0.66 Mono L1
ENSG00000116350 SRSF4 494819 sc-eQTL 5.62e-01 -0.0417 0.0717 0.663 NK L1
ENSG00000116353 MECR 445777 sc-eQTL 4.01e-01 0.0794 0.0943 0.663 NK L1
ENSG00000159023 EPB41 789628 sc-eQTL 1.52e-01 0.092 0.064 0.663 NK L1
ENSG00000198492 YTHDF2 940098 sc-eQTL 7.03e-01 -0.0286 0.075 0.663 NK L1
ENSG00000116350 SRSF4 494819 sc-eQTL 2.98e-01 -0.0707 0.0678 0.66 Other_T L1
ENSG00000116353 MECR 445777 sc-eQTL 9.71e-01 -0.00298 0.0806 0.66 Other_T L1
ENSG00000159023 EPB41 789628 sc-eQTL 4.75e-01 -0.0523 0.073 0.66 Other_T L1
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.73e-01 0.00244 0.0726 0.66 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 494819 sc-eQTL 2.83e-03 -0.327 0.108 0.64 B_Activated L2
ENSG00000116353 MECR 445777 sc-eQTL 2.19e-02 -0.227 0.0982 0.64 B_Activated L2
ENSG00000159023 EPB41 789628 sc-eQTL 7.22e-01 0.0352 0.0986 0.64 B_Activated L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 2.41e-01 0.132 0.112 0.64 B_Activated L2
ENSG00000116350 SRSF4 494819 sc-eQTL 7.86e-01 0.0229 0.0842 0.661 B_Intermediate L2
ENSG00000116353 MECR 445777 sc-eQTL 1.26e-01 0.15 0.0977 0.661 B_Intermediate L2
ENSG00000159023 EPB41 789628 sc-eQTL 4.95e-01 0.053 0.0775 0.661 B_Intermediate L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 8.71e-01 0.014 0.086 0.661 B_Intermediate L2
ENSG00000116350 SRSF4 494819 sc-eQTL 9.96e-01 -0.000432 0.0857 0.662 B_Memory L2
ENSG00000116353 MECR 445777 sc-eQTL 4.48e-01 -0.0735 0.0967 0.662 B_Memory L2
ENSG00000159023 EPB41 789628 sc-eQTL 8.86e-01 0.0118 0.0818 0.662 B_Memory L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 7.25e-01 0.0325 0.0923 0.662 B_Memory L2
ENSG00000116350 SRSF4 494819 sc-eQTL 8.71e-01 0.0119 0.0736 0.66 B_Naive1 L2
ENSG00000116353 MECR 445777 sc-eQTL 6.55e-01 -0.0433 0.0968 0.66 B_Naive1 L2
ENSG00000159023 EPB41 789628 sc-eQTL 8.18e-01 -0.0159 0.0691 0.66 B_Naive1 L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 4.38e-01 0.0635 0.0817 0.66 B_Naive1 L2
ENSG00000116350 SRSF4 494819 sc-eQTL 7.08e-01 0.0311 0.083 0.663 B_Naive2 L2
ENSG00000116353 MECR 445777 sc-eQTL 2.30e-01 -0.116 0.0965 0.663 B_Naive2 L2
ENSG00000159023 EPB41 789628 sc-eQTL 6.46e-01 0.0391 0.085 0.663 B_Naive2 L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 1.93e-01 0.122 0.0932 0.663 B_Naive2 L2
ENSG00000116350 SRSF4 494819 sc-eQTL 9.43e-01 -0.00659 0.0917 0.657 CD4_CTL L2
ENSG00000116353 MECR 445777 sc-eQTL 1.22e-01 -0.143 0.0924 0.657 CD4_CTL L2
ENSG00000159023 EPB41 789628 sc-eQTL 6.96e-01 0.0361 0.0924 0.657 CD4_CTL L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 5.08e-01 0.0565 0.0853 0.657 CD4_CTL L2
ENSG00000116350 SRSF4 494819 sc-eQTL 2.63e-01 -0.069 0.0615 0.66 CD4_Naive L2
ENSG00000116353 MECR 445777 sc-eQTL 7.25e-02 -0.159 0.088 0.66 CD4_Naive L2
ENSG00000159023 EPB41 789628 sc-eQTL 2.39e-01 -0.0553 0.0468 0.66 CD4_Naive L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 7.18e-01 -0.0196 0.0542 0.66 CD4_Naive L2
ENSG00000116350 SRSF4 494819 sc-eQTL 6.81e-02 -0.135 0.0735 0.66 CD4_TCM L2
ENSG00000116353 MECR 445777 sc-eQTL 2.24e-01 0.121 0.0995 0.66 CD4_TCM L2
ENSG00000159023 EPB41 789628 sc-eQTL 4.84e-03 -0.157 0.055 0.66 CD4_TCM L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 4.30e-01 0.0579 0.0732 0.66 CD4_TCM L2
ENSG00000116350 SRSF4 494819 sc-eQTL 9.82e-01 -0.00204 0.0906 0.66 CD4_TEM L2
ENSG00000116353 MECR 445777 sc-eQTL 4.23e-01 -0.0801 0.0998 0.66 CD4_TEM L2
ENSG00000159023 EPB41 789628 sc-eQTL 7.55e-01 0.0233 0.0746 0.66 CD4_TEM L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 8.69e-01 -0.0144 0.0867 0.66 CD4_TEM L2
ENSG00000116350 SRSF4 494819 sc-eQTL 4.21e-01 -0.0648 0.0804 0.66 CD8_CTL L2
ENSG00000116353 MECR 445777 sc-eQTL 2.59e-01 -0.107 0.0945 0.66 CD8_CTL L2
ENSG00000159023 EPB41 789628 sc-eQTL 3.75e-01 -0.064 0.0721 0.66 CD8_CTL L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 4.74e-01 0.0608 0.0848 0.66 CD8_CTL L2
ENSG00000116350 SRSF4 494819 sc-eQTL 6.86e-02 -0.148 0.081 0.66 CD8_Naive L2
ENSG00000116353 MECR 445777 sc-eQTL 7.32e-01 -0.0308 0.0897 0.66 CD8_Naive L2
ENSG00000159023 EPB41 789628 sc-eQTL 3.47e-01 -0.058 0.0616 0.66 CD8_Naive L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 5.69e-01 -0.0378 0.0663 0.66 CD8_Naive L2
ENSG00000116350 SRSF4 494819 sc-eQTL 1.25e-02 -0.248 0.0982 0.657 CD8_TCM L2
ENSG00000116353 MECR 445777 sc-eQTL 6.43e-01 0.046 0.099 0.657 CD8_TCM L2
ENSG00000159023 EPB41 789628 sc-eQTL 2.59e-01 -0.0845 0.0746 0.657 CD8_TCM L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.35e-01 -0.00755 0.0929 0.657 CD8_TCM L2
ENSG00000116350 SRSF4 494819 sc-eQTL 5.38e-01 0.058 0.0939 0.658 CD8_TEM L2
ENSG00000116353 MECR 445777 sc-eQTL 7.92e-01 -0.0262 0.0992 0.658 CD8_TEM L2
ENSG00000159023 EPB41 789628 sc-eQTL 9.08e-01 0.0114 0.0991 0.658 CD8_TEM L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.95e-01 -0.00063 0.0996 0.658 CD8_TEM L2
ENSG00000116350 SRSF4 494819 sc-eQTL 9.22e-01 0.00869 0.0892 0.658 MAIT L2
ENSG00000116353 MECR 445777 sc-eQTL 4.11e-01 0.0823 0.1 0.658 MAIT L2
ENSG00000159023 EPB41 789628 sc-eQTL 9.68e-01 0.00341 0.0843 0.658 MAIT L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 4.98e-01 0.0609 0.0897 0.658 MAIT L2
ENSG00000116350 SRSF4 494819 sc-eQTL 4.73e-01 -0.0707 0.0983 0.656 NK_CD56bright L2
ENSG00000116353 MECR 445777 sc-eQTL 2.41e-01 0.115 0.0974 0.656 NK_CD56bright L2
ENSG00000159023 EPB41 789628 sc-eQTL 4.13e-01 0.0705 0.0859 0.656 NK_CD56bright L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 4.90e-01 -0.0677 0.098 0.656 NK_CD56bright L2
ENSG00000116350 SRSF4 494819 sc-eQTL 8.83e-01 -0.0107 0.0728 0.662 NK_CD56dim L2
ENSG00000116353 MECR 445777 sc-eQTL 3.24e-01 0.0977 0.0989 0.662 NK_CD56dim L2
ENSG00000159023 EPB41 789628 sc-eQTL 5.57e-01 0.0406 0.069 0.662 NK_CD56dim L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 7.12e-01 0.0314 0.0849 0.662 NK_CD56dim L2
ENSG00000116350 SRSF4 494819 sc-eQTL 5.83e-01 0.0547 0.0995 0.658 NK_HLA L2
ENSG00000116353 MECR 445777 sc-eQTL 6.08e-01 0.0514 0.0999 0.658 NK_HLA L2
ENSG00000159023 EPB41 789628 sc-eQTL 5.37e-01 -0.058 0.0938 0.658 NK_HLA L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 7.76e-02 -0.185 0.104 0.658 NK_HLA L2
ENSG00000116350 SRSF4 494819 sc-eQTL 5.81e-01 0.0443 0.0802 0.662 NK_cytokine L2
ENSG00000116353 MECR 445777 sc-eQTL 7.06e-01 -0.0376 0.0994 0.662 NK_cytokine L2
ENSG00000159023 EPB41 789628 sc-eQTL 1.72e-01 0.105 0.0765 0.662 NK_cytokine L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 5.65e-01 -0.0507 0.0879 0.662 NK_cytokine L2
ENSG00000116350 SRSF4 494819 sc-eQTL 7.87e-01 -0.0328 0.121 0.67 PB L2
ENSG00000116353 MECR 445777 sc-eQTL 3.59e-03 0.312 0.105 0.67 PB L2
ENSG00000159023 EPB41 789628 sc-eQTL 6.56e-01 -0.0547 0.122 0.67 PB L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 5.87e-01 -0.0565 0.104 0.67 PB L2
ENSG00000116350 SRSF4 494819 sc-eQTL 9.19e-01 -0.00817 0.0797 0.657 Pro_T L2
ENSG00000116353 MECR 445777 sc-eQTL 3.43e-01 -0.0772 0.0813 0.657 Pro_T L2
ENSG00000159023 EPB41 789628 sc-eQTL 4.10e-01 -0.0684 0.0828 0.657 Pro_T L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 8.69e-02 -0.14 0.0815 0.657 Pro_T L2
ENSG00000116350 SRSF4 494819 sc-eQTL 5.91e-01 -0.047 0.0874 0.66 Treg L2
ENSG00000116353 MECR 445777 sc-eQTL 2.23e-01 -0.128 0.105 0.66 Treg L2
ENSG00000159023 EPB41 789628 sc-eQTL 1.35e-03 -0.233 0.0716 0.66 Treg L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 7.98e-01 -0.025 0.0975 0.66 Treg L2
ENSG00000116350 SRSF4 494819 sc-eQTL 2.30e-01 0.117 0.0973 0.661 cDC L2
ENSG00000116353 MECR 445777 sc-eQTL 1.31e-01 -0.166 0.109 0.661 cDC L2
ENSG00000159023 EPB41 789628 sc-eQTL 9.80e-01 0.00227 0.0924 0.661 cDC L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 3.01e-01 -0.0967 0.0933 0.661 cDC L2
ENSG00000116350 SRSF4 494819 sc-eQTL 6.32e-01 -0.0371 0.0774 0.66 cMono_IL1B L2
ENSG00000116353 MECR 445777 sc-eQTL 5.62e-01 -0.0556 0.0957 0.66 cMono_IL1B L2
ENSG00000159023 EPB41 789628 sc-eQTL 2.34e-01 -0.0833 0.0698 0.66 cMono_IL1B L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 5.66e-03 0.2 0.0714 0.66 cMono_IL1B L2
ENSG00000116350 SRSF4 494819 sc-eQTL 4.22e-01 -0.0582 0.0723 0.66 cMono_S100A L2
ENSG00000116353 MECR 445777 sc-eQTL 9.28e-01 -0.00867 0.0955 0.66 cMono_S100A L2
ENSG00000159023 EPB41 789628 sc-eQTL 4.71e-01 -0.0632 0.0875 0.66 cMono_S100A L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 8.94e-01 -0.013 0.0973 0.66 cMono_S100A L2
ENSG00000116350 SRSF4 494819 sc-eQTL 4.18e-01 -0.0945 0.116 0.63 gdT L2
ENSG00000116353 MECR 445777 sc-eQTL 2.58e-01 -0.131 0.116 0.63 gdT L2
ENSG00000159023 EPB41 789628 sc-eQTL 3.36e-01 -0.098 0.101 0.63 gdT L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.14e-01 -0.0123 0.114 0.63 gdT L2
ENSG00000116350 SRSF4 494819 sc-eQTL 1.81e-01 -0.124 0.0922 0.656 intMono L2
ENSG00000116353 MECR 445777 sc-eQTL 8.27e-01 -0.0215 0.0983 0.656 intMono L2
ENSG00000159023 EPB41 789628 sc-eQTL 8.67e-01 0.0161 0.0958 0.656 intMono L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.02e-01 0.0127 0.103 0.656 intMono L2
ENSG00000116350 SRSF4 494819 sc-eQTL 2.79e-01 -0.0978 0.09 0.656 ncMono L2
ENSG00000116353 MECR 445777 sc-eQTL 5.23e-01 0.0622 0.0972 0.656 ncMono L2
ENSG00000159023 EPB41 789628 sc-eQTL 1.98e-01 -0.126 0.0971 0.656 ncMono L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.96e-01 0.000475 0.0924 0.656 ncMono L2
ENSG00000116350 SRSF4 494819 sc-eQTL 9.35e-01 -0.00892 0.109 0.664 pDC L2
ENSG00000116353 MECR 445777 sc-eQTL 9.13e-01 -0.0123 0.113 0.664 pDC L2
ENSG00000159023 EPB41 789628 sc-eQTL 6.58e-01 0.0475 0.107 0.664 pDC L2
ENSG00000198492 YTHDF2 940098 sc-eQTL 2.20e-02 0.194 0.084 0.664 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 494819 sc-eQTL 6.02e-01 -0.0406 0.0778 0.66 B_Memory LOneK1K
ENSG00000116353 MECR 445777 sc-eQTL 9.66e-01 -0.00411 0.096 0.66 B_Memory LOneK1K
ENSG00000159023 EPB41 789628 sc-eQTL 6.47e-01 0.0316 0.0688 0.66 B_Memory LOneK1K
ENSG00000198492 YTHDF2 940098 sc-eQTL 2.38e-01 0.0949 0.0802 0.66 B_Memory LOneK1K
ENSG00000116350 SRSF4 494819 sc-eQTL 9.45e-01 0.00481 0.0691 0.66 B_Naive LOneK1K
ENSG00000116353 MECR 445777 sc-eQTL 2.74e-01 -0.0987 0.0899 0.66 B_Naive LOneK1K
ENSG00000159023 EPB41 789628 sc-eQTL 9.84e-01 -0.00134 0.0661 0.66 B_Naive LOneK1K
ENSG00000198492 YTHDF2 940098 sc-eQTL 3.10e-01 0.079 0.0777 0.66 B_Naive LOneK1K
ENSG00000116350 SRSF4 494819 sc-eQTL 5.77e-01 -0.0382 0.0684 0.66 CD14_Mono LOneK1K
ENSG00000116353 MECR 445777 sc-eQTL 3.59e-01 -0.0841 0.0914 0.66 CD14_Mono LOneK1K
ENSG00000159023 EPB41 789628 sc-eQTL 2.72e-01 -0.0747 0.0678 0.66 CD14_Mono LOneK1K
ENSG00000198492 YTHDF2 940098 sc-eQTL 4.94e-02 0.143 0.0722 0.66 CD14_Mono LOneK1K
ENSG00000116350 SRSF4 494819 sc-eQTL 9.75e-02 -0.135 0.0811 0.664 CD16_Mono LOneK1K
ENSG00000116353 MECR 445777 sc-eQTL 7.32e-01 0.0319 0.0931 0.664 CD16_Mono LOneK1K
ENSG00000159023 EPB41 789628 sc-eQTL 4.65e-01 -0.069 0.0943 0.664 CD16_Mono LOneK1K
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.23e-01 0.0092 0.0954 0.664 CD16_Mono LOneK1K
ENSG00000116350 SRSF4 494819 sc-eQTL 9.80e-01 -0.00178 0.0702 0.662 NK_CD56dim LOneK1K
ENSG00000116353 MECR 445777 sc-eQTL 4.27e-01 0.0768 0.0966 0.662 NK_CD56dim LOneK1K
ENSG00000159023 EPB41 789628 sc-eQTL 2.79e-01 0.0713 0.0657 0.662 NK_CD56dim LOneK1K
ENSG00000198492 YTHDF2 940098 sc-eQTL 9.36e-01 -0.00602 0.0753 0.662 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116350 SRSF4 494819 eQTL 0.00253 -0.033 0.0109 0.00162 0.00109 0.315

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina