Genes within 1Mb (chr1:29178558:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060656 PTPRU -57958 eQTL 1.32e-02 0.0679 0.0273 0.0 0.0 0.471
ENSG00000116350 SRSF4 -3342 eQTL 9.38e-09 -0.0579 0.01 0.0211 0.0209 0.471
ENSG00000116353 MECR -52384 pQTL 5.69e-08 -0.0578 0.0106 0.018 0.0174 0.461
ENSG00000159023 EPB41 291467 eQTL 1.02e-02 -0.0465 0.0181 0.0 0.0 0.471
ENSG00000198492 YTHDF2 441937 eQTL 4.10e-02 0.0243 0.0119 0.0 0.0 0.471
ENSG00000200087 SNORA73B 669999 eQTL 8.18e-04 0.137 0.0407 0.00379 0.00288 0.471
ENSG00000204138 PHACTR4 808976 eQTL 2.55e-02 -0.043 0.0192 0.00203 0.0 0.471
ENSG00000233427 AL009181.1 301222 eQTL 3.02e-04 0.13 0.0357 0.0 0.0 0.471
ENSG00000253304 TMEM200B 54655 eQTL 4.15e-16 -0.285 0.0344 0.0 0.0 0.471
ENSG00000274266 SNORA73A 671192 eQTL 4.28e-02 0.0805 0.0397 0.00113 0.0 0.471


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000200087 SNORA73B 669999 2.66e-07 1.16e-07 3.59e-08 1.82e-07 9.02e-08 9.57e-08 1.38e-07 5.33e-08 1.41e-07 4.38e-08 1.59e-07 7.88e-08 1.26e-07 6.21e-08 5.53e-08 7.89e-08 4.48e-08 1.14e-07 5.36e-08 3.89e-08 1.04e-07 1.27e-07 1.3e-07 4.53e-08 1.31e-07 1.15e-07 1.12e-07 8.71e-08 9.88e-08 1.09e-07 9.73e-08 4.07e-08 2.91e-08 8.68e-08 8.99e-08 3.87e-08 5.11e-08 9.68e-08 7.23e-08 3e-08 3.07e-08 1.35e-07 5.22e-08 1.55e-08 8.03e-08 1.69e-08 1.23e-07 4.04e-09 4.73e-08
ENSG00000253304 TMEM200B 54655 1.86e-05 2.67e-05 2.36e-06 1.08e-05 2.41e-06 6.12e-06 1.97e-05 2.11e-06 1.73e-05 6.72e-06 1.85e-05 7.45e-06 2.76e-05 6.43e-06 4.47e-06 8.68e-06 8.19e-06 1.35e-05 3.53e-06 3.29e-06 6.47e-06 1.65e-05 1.25e-05 3.66e-06 2.58e-05 4.5e-06 7.53e-06 6.3e-06 1.44e-05 1.14e-05 1.04e-05 9.64e-07 1.28e-06 3.55e-06 6.33e-06 2.65e-06 1.76e-06 1.93e-06 2.7e-06 1.27e-06 8.85e-07 2.31e-05 1.84e-06 2.52e-07 8.09e-07 1.67e-06 1.79e-06 7.99e-07 4.77e-07