Genes within 1Mb (chr1:28885603:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 -296297 sc-eQTL 9.17e-01 0.0268 0.257 0.052 gdT L2
ENSG00000116353 MECR -345339 sc-eQTL 7.41e-01 -0.0848 0.256 0.052 gdT L2
ENSG00000117748 RPA2 970857 sc-eQTL 3.67e-01 0.182 0.201 0.052 gdT L2
ENSG00000120656 TAF12 242518 sc-eQTL 8.64e-01 0.0417 0.243 0.052 gdT L2
ENSG00000126698 DNAJC8 652574 sc-eQTL 8.47e-01 -0.044 0.227 0.052 gdT L2
ENSG00000130766 SESN2 626085 sc-eQTL 1.38e-01 0.353 0.236 0.052 gdT L2
ENSG00000130770 ATP5IF1 649494 sc-eQTL 4.11e-01 -0.196 0.237 0.052 gdT L2
ENSG00000130772 MED18 556601 sc-eQTL 6.57e-01 -0.0948 0.213 0.052 gdT L2
ENSG00000158156 XKR8 926141 sc-eQTL 3.97e-01 0.199 0.235 0.052 gdT L2
ENSG00000158161 EYA3 796966 sc-eQTL 8.14e-01 0.0557 0.236 0.052 gdT L2
ENSG00000159023 EPB41 -1488 sc-eQTL 1.01e-01 -0.367 0.222 0.052 gdT L2
ENSG00000162419 GMEB1 216871 sc-eQTL 8.56e-01 0.044 0.243 0.052 gdT L2
ENSG00000180098 TRNAU1AP 332518 sc-eQTL 7.21e-01 0.0827 0.231 0.052 gdT L2
ENSG00000180198 RCC1 379660 sc-eQTL 6.61e-02 -0.43 0.232 0.052 gdT L2
ENSG00000197989 SNHG12 302471 sc-eQTL 4.26e-01 -0.18 0.226 0.052 gdT L2
ENSG00000198492 YTHDF2 148982 sc-eQTL 1.03e-01 0.408 0.249 0.052 gdT L2
ENSG00000204138 PHACTR4 516021 sc-eQTL 5.21e-01 -0.146 0.227 0.052 gdT L2
ENSG00000242125 SNHG3 379623 sc-eQTL 5.86e-01 0.12 0.22 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -345339 pQTL 0.0385 0.0791 0.0382 0.0 0.0 0.0275
ENSG00000159023 EPB41 -1488 eQTL 0.000293 0.24 0.066 0.0 0.0 0.027
ENSG00000162419 GMEB1 216871 eQTL 0.0964 -0.0917 0.0551 0.00107 0.0 0.027
ENSG00000180198 RCC1 379660 eQTL 0.0246 0.159 0.0705 0.0 0.0 0.027
ENSG00000188060 RAB42 293403 eQTL 3.34e-02 -0.301 0.141 0.00186 0.0 0.027
ENSG00000204138 PHACTR4 516021 eQTL 0.0055 0.196 0.0704 0.00303 0.0 0.027
ENSG00000233427 AL009181.1 8267 eQTL 0.0434 0.266 0.132 0.0 0.0 0.027


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina