Genes within 1Mb (chr1:28860487:CCT:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060656 PTPRU -376029 eQTL 3.56e-04 0.215 0.0599 0.0 0.0 0.0564
ENSG00000117748 RPA2 945741 pQTL 1.27e-01 0.0658 0.0431 0.001 0.0 0.0574
ENSG00000120656 TAF12 217402 eQTL 3.47e-02 -0.0364 0.0172 0.00118 0.0 0.0564
ENSG00000126698 DNAJC8 627458 eQTL 4.33e-02 0.0662 0.0327 0.0 0.0 0.0564
ENSG00000130770 ATP5IF1 624378 eQTL 3.90e-03 0.11 0.0379 0.00105 0.0 0.0564
ENSG00000180198 RCC1 354544 eQTL 2.90e-04 -0.153 0.0421 0.0 0.0 0.0564
ENSG00000188060 RAB42 268287 eQTL 9.36e-02 -0.142 0.0848 0.0012 0.0 0.0564
ENSG00000214812 AL137792.1 739166 eQTL 7.95e-02 0.122 0.0696 0.00134 0.0 0.0564
ENSG00000233427 AL009181.1 -16849 eQTL 1.54e-03 0.25 0.0787 0.0 0.0 0.0564
ENSG00000253304 TMEM200B -263416 eQTL 1.40e-03 -0.25 0.0779 0.0 0.0 0.0564


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000060656 PTPRU -376029 4.19e-06 1.35e-07 5.82e-08 1.82e-07 9.79e-08 2.46e-07 3.7e-07 5.35e-08 1.47e-07 5.67e-08 1.83e-07 1.23e-07 3.77e-07 7.37e-08 5.82e-08 9.6e-08 4.48e-08 4.24e-07 6.92e-08 3.88e-08 1.19e-07 2.24e-07 2.48e-07 4.16e-08 3.41e-07 1.23e-07 1.07e-07 9.36e-08 1.48e-07 2.89e-07 1.27e-07 3.41e-08 2.74e-08 9.52e-08 3.07e-08 3.6e-08 4.75e-08 9.49e-08 7.58e-08 3.12e-08 3.8e-08 1.22e-06 2.47e-08 1.32e-08 1.01e-07 8.31e-09 1.26e-07 4.7e-09 4.74e-08
ENSG00000180198 RCC1 354544 4.29e-06 1.33e-07 6.15e-08 1.9e-07 9.87e-08 3.11e-07 4.25e-07 5.49e-08 1.5e-07 6.08e-08 2.04e-07 1.46e-07 4.27e-07 7.64e-08 5.43e-08 1.06e-07 3.88e-08 4.25e-07 7.09e-08 4.03e-08 1.21e-07 2.48e-07 2.81e-07 3.79e-08 4.27e-07 1.31e-07 1.07e-07 9.57e-08 1.6e-07 3.71e-07 1.43e-07 3.59e-08 2.91e-08 9.58e-08 3.36e-08 3.49e-08 5.06e-08 9.68e-08 7.47e-08 3.09e-08 3.51e-08 1.4e-06 5.51e-08 1.16e-08 9.88e-08 6.98e-09 1.25e-07 4.6e-09 4.74e-08
ENSG00000253304 TMEM200B -263416 7.8e-06 2.4e-07 9.16e-08 2.41e-07 1.03e-07 4.76e-07 7.25e-07 5.2e-08 2.53e-07 1.21e-07 4.64e-07 3.11e-07 9.37e-07 8.54e-08 1.45e-07 2.1e-07 4.24e-08 6.1e-07 1.27e-07 4.31e-08 1.27e-07 5.2e-07 5.63e-07 2.83e-08 1.14e-06 2.2e-07 1.22e-07 1.1e-07 4.22e-07 8.4e-07 3.1e-07 3.95e-08 3.89e-08 1.19e-07 1.97e-07 3.24e-08 5.61e-08 8.68e-08 6.67e-08 3.55e-08 4.51e-08 1.64e-06 3.49e-07 1.11e-08 7.79e-08 1.33e-08 1.2e-07 4.14e-09 4.79e-08