Genes within 1Mb (chr1:28828321:T:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -402621 pQTL 2.67e-03 0.0429 0.0143 0.0 0.0 0.16
ENSG00000116353 MECR -402621 eQTL 4.62e-02 0.0493 0.0247 0.00106 0.0 0.156
ENSG00000117751 PPP1R8 997539 eQTL 9.54e-03 -0.0526 0.0203 0.0 0.0 0.156
ENSG00000126698 DNAJC8 595292 eQTL 1.29e-02 -0.0492 0.0198 0.0 0.0 0.156
ENSG00000130770 ATP5IF1 592212 pQTL 3.40e-02 0.0353 0.0167 0.0 0.0 0.16
ENSG00000130770 ATP5IF1 592212 eQTL 2.74e-02 -0.0508 0.023 0.0 0.0 0.156
ENSG00000180198 RCC1 322378 pQTL 4.91e-02 0.0423 0.0215 0.0 0.0 0.16
ENSG00000180198 RCC1 322378 eQTL 1.34e-06 -0.123 0.0253 0.0 0.0 0.156
ENSG00000197989 SNHG12 245335 eQTL 1.02e-02 -0.0542 0.0211 0.00222 0.0 0.156
ENSG00000198492 YTHDF2 91700 eQTL 3.35e-10 -0.0984 0.0155 0.0 0.00112 0.156
ENSG00000204138 PHACTR4 458739 eQTL 2.99e-03 -0.0759 0.0255 0.0 0.0 0.156
ENSG00000233427 AL009181.1 -49015 eQTL 1.47e-02 -0.117 0.0477 0.0 0.0 0.156
ENSG00000253304 TMEM200B -295582 eQTL 5.18e-04 0.164 0.0471 0.0 0.0 0.156
ENSG00000274266 SNORA73A 320955 eQTL 8.33e-02 -0.0915 0.0528 0.00105 0.0 0.156
ENSG00000279443 AL513497.1 283861 eQTL 4.52e-02 -0.0923 0.046 0.00116 0.0 0.156


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117751 PPP1R8 997539 2.61e-07 1.01e-07 3.69e-08 1.82e-07 9.65e-08 9.32e-08 1.41e-07 5.35e-08 1.41e-07 4.38e-08 1.6e-07 7.88e-08 1.33e-07 6.21e-08 5.44e-08 7.89e-08 4.94e-08 1.1e-07 5.19e-08 4.03e-08 1.05e-07 1.3e-07 1.3e-07 4.54e-08 1.31e-07 1.15e-07 1.1e-07 8.71e-08 1.02e-07 1.12e-07 9.58e-08 4.1e-08 2.91e-08 8.65e-08 8.93e-08 3.97e-08 4.89e-08 9.49e-08 7.63e-08 3.18e-08 3.98e-08 1.37e-07 4.12e-08 1.86e-08 7.26e-08 1.69e-08 1.25e-07 4.09e-09 4.77e-08
ENSG00000130766 \N 568803 3.14e-07 1.53e-07 5.72e-08 2.41e-07 9.8e-08 8.21e-08 2.1e-07 5.66e-08 1.71e-07 7.6e-08 1.61e-07 1.23e-07 3.04e-07 8.07e-08 5.94e-08 8.08e-08 4.31e-08 1.64e-07 7.18e-08 5.87e-08 1.25e-07 1.39e-07 1.64e-07 3.42e-08 2.37e-07 1.22e-07 1.17e-07 1.12e-07 1.31e-07 1.29e-07 1.22e-07 3.68e-08 3.21e-08 1.02e-07 5.16e-08 3.11e-08 4.47e-08 8.25e-08 6.49e-08 7.04e-08 4.78e-08 1.59e-07 5.22e-08 1.54e-08 3.55e-08 1.19e-08 1.11e-07 2e-09 5e-08
ENSG00000130768 \N 893321 2.64e-07 1.11e-07 3.59e-08 1.8e-07 9.02e-08 9.57e-08 1.38e-07 5.49e-08 1.41e-07 4.4e-08 1.56e-07 7.78e-08 1.41e-07 6.21e-08 5.55e-08 7.26e-08 4.48e-08 1.14e-07 5.19e-08 4.21e-08 1.04e-07 1.27e-07 1.32e-07 4.16e-08 1.32e-07 1.19e-07 1.12e-07 9.15e-08 1.03e-07 1.11e-07 9.91e-08 3.96e-08 3.09e-08 8.55e-08 8.96e-08 3.93e-08 5.01e-08 9.65e-08 7.47e-08 3.77e-08 4.64e-08 1.31e-07 4.1e-08 1.23e-08 5.87e-08 1.67e-08 1.25e-07 3.99e-09 5.04e-08
ENSG00000180198 RCC1 322378 1.31e-06 8.23e-07 1.48e-07 4.4e-07 9.61e-08 3.39e-07 7.1e-07 1.73e-07 8.7e-07 3.1e-07 1.1e-06 5.4e-07 1.58e-06 2.1e-07 3.13e-07 4.19e-07 5.63e-07 4.44e-07 3.36e-07 3.54e-07 2.38e-07 5.36e-07 5.63e-07 3.53e-07 1.69e-06 2.57e-07 4.37e-07 3.95e-07 6.76e-07 9.3e-07 4.53e-07 4.5e-08 5.95e-08 3.91e-07 3.29e-07 3.05e-07 2.83e-07 1.15e-07 1.14e-07 8.76e-08 2.38e-07 1.02e-06 6.04e-08 4.16e-08 2e-07 4.28e-08 1.1e-07 4.41e-08 5.93e-08
ENSG00000188060 \N 236121 1.29e-06 1.03e-06 3.45e-07 1.23e-06 3.6e-07 5.88e-07 1.55e-06 3.66e-07 1.47e-06 4.52e-07 1.82e-06 7.82e-07 2.7e-06 2.59e-07 5.56e-07 9.23e-07 9.2e-07 7.19e-07 8.83e-07 5.23e-07 5.66e-07 1.63e-06 8.89e-07 5.57e-07 2.47e-06 4.32e-07 9.05e-07 7.45e-07 1.46e-06 1.17e-06 8.51e-07 2.89e-07 1.89e-07 5.4e-07 5.76e-07 4.91e-07 6.81e-07 2.74e-07 4.75e-07 2.05e-07 2.71e-07 1.62e-06 1.23e-07 1.74e-07 2.11e-07 1.12e-07 2.41e-07 3.68e-08 8.21e-08
ENSG00000198492 YTHDF2 91700 5.13e-06 5.54e-06 6.64e-07 3.85e-06 1.54e-06 1.53e-06 7e-06 1.1e-06 4.48e-06 2.69e-06 6.19e-06 3.17e-06 1.01e-05 2.15e-06 1.09e-06 4.06e-06 2.51e-06 4.02e-06 1.58e-06 1.58e-06 2.79e-06 4.98e-06 4.68e-06 1.89e-06 8.92e-06 1.95e-06 2.28e-06 1.74e-06 5.21e-06 6.17e-06 3.38e-06 5.11e-07 6.95e-07 2.6e-06 1.97e-06 1.56e-06 1.2e-06 6.48e-07 1.12e-06 9.55e-07 7.73e-07 7.06e-06 6.52e-07 1.56e-07 5.92e-07 1.08e-06 1.16e-06 7.5e-07 3.43e-07
ENSG00000204138 PHACTR4 458739 5.37e-07 2.56e-07 6.57e-08 3.58e-07 1.07e-07 1.19e-07 3.57e-07 6.57e-08 2.6e-07 1.28e-07 2.84e-07 2.04e-07 6.08e-07 9.15e-08 7.79e-08 1.26e-07 7.3e-08 2.66e-07 8.93e-08 7.29e-08 1.33e-07 2.15e-07 2.33e-07 7.22e-08 4.54e-07 1.71e-07 1.37e-07 1.61e-07 1.87e-07 2.75e-07 1.95e-07 6.68e-08 4.98e-08 1.16e-07 1.83e-07 5.2e-08 7.86e-08 6e-08 5.7e-08 5.61e-08 5.38e-08 2.8e-07 3.46e-08 2e-08 7.26e-08 8.59e-09 8.21e-08 0.0 4.67e-08
ENSG00000253304 TMEM200B -295582 1.24e-06 9.45e-07 2.06e-07 7.35e-07 1.4e-07 3.3e-07 9.74e-07 2.62e-07 1.12e-06 2.69e-07 1.19e-06 5.68e-07 1.99e-06 2.57e-07 4.15e-07 5.75e-07 7.39e-07 5.27e-07 3.71e-07 4.71e-07 2.38e-07 7.06e-07 7.08e-07 5.25e-07 1.93e-06 2.34e-07 5.43e-07 4.92e-07 8.81e-07 1.08e-06 5.45e-07 5.02e-08 1.32e-07 5.6e-07 4.17e-07 3.91e-07 3.96e-07 1.5e-07 1.51e-07 2.46e-07 2.84e-07 1.3e-06 6.28e-08 6.53e-08 1.83e-07 7.16e-08 1.58e-07 8.49e-08 6.04e-08