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Genes within 1Mb (chr1:28732714:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116350 SRSF4 -449186 sc-eQTL 7.57e-01 -0.0685 0.221 0.054 B_Activated L2
ENSG00000116353 MECR -498228 sc-eQTL 7.05e-01 0.0755 0.199 0.054 B_Activated L2
ENSG00000117748 RPA2 817968 sc-eQTL 5.26e-02 -0.414 0.212 0.054 B_Activated L2
ENSG00000117751 PPP1R8 901932 sc-eQTL 3.18e-01 -0.197 0.196 0.054 B_Activated L2
ENSG00000117758 STX12 959495 sc-eQTL 9.45e-01 -0.0143 0.207 0.054 B_Activated L2
ENSG00000120656 TAF12 89629 sc-eQTL 3.27e-01 0.2 0.203 0.054 B_Activated L2
ENSG00000126698 DNAJC8 499685 sc-eQTL 8.11e-01 -0.052 0.217 0.054 B_Activated L2
ENSG00000130766 SESN2 473196 sc-eQTL 6.00e-01 -0.11 0.208 0.054 B_Activated L2
ENSG00000130770 ATP5IF1 496605 sc-eQTL 9.99e-01 0.000327 0.201 0.054 B_Activated L2
ENSG00000130772 MED18 403712 sc-eQTL 4.00e-01 0.149 0.176 0.054 B_Activated L2
ENSG00000130775 THEMIS2 860171 sc-eQTL 6.90e-01 0.0607 0.152 0.054 B_Activated L2
ENSG00000158156 XKR8 773252 sc-eQTL 8.36e-01 -0.042 0.202 0.054 B_Activated L2
ENSG00000158161 EYA3 644077 sc-eQTL 2.21e-01 0.245 0.199 0.054 B_Activated L2
ENSG00000159023 EPB41 -154377 sc-eQTL 8.52e-01 0.0368 0.197 0.054 B_Activated L2
ENSG00000162419 GMEB1 63982 sc-eQTL 4.69e-01 0.155 0.214 0.054 B_Activated L2
ENSG00000169403 PTAFR 538778 sc-eQTL 1.79e-01 -0.188 0.14 0.054 B_Activated L2
ENSG00000180098 TRNAU1AP 179629 sc-eQTL 1.02e-01 -0.353 0.215 0.054 B_Activated L2
ENSG00000180198 RCC1 226771 sc-eQTL 1.18e-01 0.302 0.192 0.054 B_Activated L2
ENSG00000197989 SNHG12 149582 sc-eQTL 5.65e-01 -0.124 0.216 0.054 B_Activated L2
ENSG00000198492 YTHDF2 -3907 sc-eQTL 5.49e-01 0.134 0.224 0.054 B_Activated L2
ENSG00000204138 PHACTR4 363132 sc-eQTL 2.61e-01 0.242 0.214 0.054 B_Activated L2
ENSG00000229388 LINC01715 89486 sc-eQTL 8.51e-01 0.0324 0.172 0.054 B_Activated L2
ENSG00000242125 SNHG3 226734 sc-eQTL 5.16e-01 0.136 0.208 0.054 B_Activated L2
ENSG00000270605 AL353622.1 491261 sc-eQTL 5.94e-02 0.329 0.173 0.054 B_Activated L2
ENSG00000116350 SRSF4 -449186 sc-eQTL 8.97e-01 -0.0264 0.203 0.07 PB L2
ENSG00000116353 MECR -498228 sc-eQTL 1.55e-02 -0.437 0.178 0.07 PB L2
ENSG00000117748 RPA2 817968 sc-eQTL 9.70e-01 -0.00816 0.216 0.07 PB L2
ENSG00000117751 PPP1R8 901932 sc-eQTL 9.29e-01 -0.0179 0.202 0.07 PB L2
ENSG00000117758 STX12 959495 sc-eQTL 3.09e-01 0.218 0.213 0.07 PB L2
ENSG00000120656 TAF12 89629 sc-eQTL 4.67e-01 -0.125 0.171 0.07 PB L2
ENSG00000126698 DNAJC8 499685 sc-eQTL 6.97e-01 -0.0844 0.216 0.07 PB L2
ENSG00000130766 SESN2 473196 sc-eQTL 8.29e-01 0.0432 0.2 0.07 PB L2
ENSG00000130770 ATP5IF1 496605 sc-eQTL 2.21e-01 -0.15 0.122 0.07 PB L2
ENSG00000130772 MED18 403712 sc-eQTL 2.43e-01 -0.252 0.215 0.07 PB L2
ENSG00000130775 THEMIS2 860171 sc-eQTL 7.67e-01 0.0546 0.184 0.07 PB L2
ENSG00000158156 XKR8 773252 sc-eQTL 6.79e-01 0.0835 0.201 0.07 PB L2
ENSG00000158161 EYA3 644077 sc-eQTL 7.31e-01 0.0764 0.222 0.07 PB L2
ENSG00000159023 EPB41 -154377 sc-eQTL 3.44e-01 -0.194 0.204 0.07 PB L2
ENSG00000162419 GMEB1 63982 sc-eQTL 7.09e-01 0.0782 0.209 0.07 PB L2
ENSG00000169403 PTAFR 538778 sc-eQTL 9.10e-02 -0.304 0.178 0.07 PB L2
ENSG00000180098 TRNAU1AP 179629 sc-eQTL 1.61e-01 0.276 0.196 0.07 PB L2
ENSG00000180198 RCC1 226771 sc-eQTL 1.07e-02 0.535 0.206 0.07 PB L2
ENSG00000197989 SNHG12 149582 sc-eQTL 9.25e-02 -0.353 0.208 0.07 PB L2
ENSG00000198492 YTHDF2 -3907 sc-eQTL 2.49e-01 0.2 0.173 0.07 PB L2
ENSG00000204138 PHACTR4 363132 sc-eQTL 3.10e-01 -0.203 0.199 0.07 PB L2
ENSG00000229388 LINC01715 89486 sc-eQTL 2.46e-01 -0.231 0.198 0.07 PB L2
ENSG00000242125 SNHG3 226734 sc-eQTL 8.81e-01 -0.0309 0.206 0.07 PB L2
ENSG00000270605 AL353622.1 491261 sc-eQTL 5.89e-01 -0.109 0.201 0.07 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -498228 pQTL 0.0243 -0.0654 0.029 0.0 0.0 0.0347
ENSG00000130772 MED18 403712 pQTL 0.0636 0.0638 0.0344 0.00112 0.0 0.0347
ENSG00000204138 PHACTR4 363132 eQTL 0.214 -0.0666 0.0535 0.00111 0.0 0.0319
ENSG00000270605 AL353622.1 491261 eQTL 0.000108 0.273 0.0703 0.0 0.0 0.0319

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000270605 AL353622.1 491261 7.23e-07 5.18e-07 1.05e-07 3.48e-07 1.05e-07 1.71e-07 5.28e-07 1.38e-07 4.43e-07 2.39e-07 6.56e-07 3.61e-07 7.02e-07 1.23e-07 2.26e-07 2.36e-07 2.53e-07 3.79e-07 1.97e-07 1.51e-07 2.05e-07 3.71e-07 3.19e-07 1.29e-07 7.94e-07 2.7e-07 2.62e-07 2.83e-07 3.83e-07 4.27e-07 2.93e-07 6.06e-08 4.49e-08 1.23e-07 2.85e-07 7.68e-08 1.09e-07 8.33e-08 5.67e-08 2.68e-08 1.01e-07 5.44e-07 1.21e-08 5.68e-09 1.14e-07 1.31e-08 1.1e-07 1.11e-08 4.71e-08