Genes within 1Mb (chr1:28725508:C:CGTGAGCTACT):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -505434 eQTL 8.22e-03 0.158 0.0595 0.00256 0.00103 0.025
ENSG00000117748 RPA2 810762 pQTL 1.15e-01 -0.0995 0.0631 0.00102 0.0 0.0253
ENSG00000126698 DNAJC8 492479 eQTL 1.35e-06 -0.23 0.0472 0.0 0.0 0.025
ENSG00000130768 SMPDL3B 790508 eQTL 7.45e-02 0.132 0.0738 0.00164 0.0 0.025
ENSG00000130770 ATP5IF1 489399 eQTL 1.48e-04 -0.21 0.0552 0.0 0.0 0.025
ENSG00000158161 EYA3 636871 eQTL 2.74e-02 0.133 0.0604 0.00118 0.0 0.025
ENSG00000169403 PTAFR 531572 eQTL 5.20e-03 0.136 0.0486 0.00116 0.0 0.025
ENSG00000198492 YTHDF2 -11113 eQTL 5.83e-03 -0.105 0.038 0.0 0.0 0.025
ENSG00000200087 SNORA73B 216949 eQTL 1.32e-02 -0.325 0.131 0.001 0.0 0.025
ENSG00000253304 TMEM200B -398395 eQTL 2.51e-02 0.256 0.114 0.0 0.0 0.025
ENSG00000274266 SNORA73A 218142 eQTL 2.54e-02 -0.285 0.127 0.0021 0.0 0.025


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117748 RPA2 810762 1.05e-06 9.27e-07 3.02e-07 4.01e-07 9.16e-08 5.09e-07 1.49e-06 5.84e-08 8.29e-07 3.22e-07 1.03e-06 6.08e-07 1.46e-06 1.72e-07 1.24e-07 4.11e-07 6.17e-08 5.12e-07 8.26e-07 8.41e-08 4.44e-07 7.58e-07 8.27e-07 3.56e-07 1.97e-06 2.54e-07 3.37e-07 1.86e-07 1.04e-06 1.11e-06 3.13e-07 3.71e-08 3.51e-08 3.82e-07 3.44e-07 1.28e-07 1.1e-07 9.84e-08 4.9e-08 2.71e-08 5.44e-08 7.38e-07 6.65e-08 1.91e-07 3.3e-08 3.92e-08 9.34e-08 2e-09 5.16e-08
ENSG00000126698 DNAJC8 492479 1.39e-06 2.34e-06 4.62e-07 1.35e-06 4.83e-07 7.53e-07 2.45e-06 3.46e-07 1.76e-06 7.2e-07 2.05e-06 1.95e-06 3.04e-06 4.89e-07 5.01e-07 1.15e-06 7.76e-07 1.92e-06 1.42e-06 6.97e-07 1.4e-06 2.26e-06 2.58e-06 8.95e-07 4.21e-06 9.49e-07 9.78e-07 7.24e-07 1.98e-06 1.99e-06 8.46e-07 3.6e-08 4.83e-08 8.91e-07 6.12e-07 6.32e-07 4.12e-07 3.46e-07 2.19e-07 2.11e-07 9.99e-08 2.01e-06 6.36e-07 1.61e-07 1.61e-07 3.38e-07 2.3e-07 6.95e-08 1.98e-07
ENSG00000130770 ATP5IF1 489399 1.38e-06 2.37e-06 4.62e-07 1.35e-06 4.73e-07 8.06e-07 2.48e-06 3.43e-07 1.69e-06 7.42e-07 2.02e-06 1.98e-06 3.22e-06 5.23e-07 4.95e-07 1.19e-06 7.66e-07 1.9e-06 1.45e-06 6.88e-07 1.39e-06 2.19e-06 2.61e-06 9.49e-07 4.08e-06 9.68e-07 1.02e-06 7.19e-07 2.06e-06 1.95e-06 8.43e-07 3.66e-08 4.92e-08 8.95e-07 6.46e-07 6.03e-07 4.26e-07 3.47e-07 2.32e-07 2.42e-07 1.01e-07 2.09e-06 6.38e-07 1.73e-07 1.62e-07 3.1e-07 2.42e-07 7e-08 2.13e-07
ENSG00000180098 \N 172423 5.63e-06 9.31e-06 6.49e-07 3.82e-06 2.22e-06 4.1e-06 1.04e-05 1.26e-06 6.09e-06 3.4e-06 1.04e-05 6.31e-06 1.13e-05 4e-06 9.59e-07 6.42e-06 1.98e-06 5.77e-06 3.09e-06 1.15e-06 6.52e-06 9.52e-06 7.91e-06 1.99e-06 1.52e-05 2.49e-06 3.51e-06 2.5e-06 7.5e-06 7.69e-06 4.11e-06 2.46e-07 8.14e-07 2.78e-06 2.88e-06 1.31e-06 1.06e-06 6.8e-07 8.5e-07 5e-07 4.72e-07 8.1e-06 2.35e-06 4.02e-07 4.39e-07 1.61e-06 9.85e-07 6.9e-07 4.52e-07
ENSG00000200087 SNORA73B 216949 4.46e-06 5.93e-06 7.29e-07 3.38e-06 1.61e-06 2.14e-06 9.71e-06 9.79e-07 4.49e-06 2.91e-06 7.42e-06 5.26e-06 9.48e-06 2.44e-06 1.35e-06 4.63e-06 1.55e-06 3.86e-06 2.48e-06 8.79e-07 4.73e-06 7.55e-06 5.93e-06 1.49e-06 1.21e-05 2.19e-06 2.31e-06 1.62e-06 6.07e-06 6.42e-06 2.64e-06 5.06e-08 5.29e-07 1.9e-06 2.05e-06 1.16e-06 9.07e-07 4.4e-07 1.31e-06 3.79e-07 1.83e-07 5.79e-06 1.49e-06 3.62e-07 3.69e-07 8.44e-07 7.91e-07 3.35e-07 5.97e-07
ENSG00000274978 \N 76908 1.55e-05 2.05e-05 2.59e-06 9.74e-06 3.09e-06 7.63e-06 3.16e-05 2.2e-06 1.56e-05 5.52e-06 2.04e-05 7.98e-06 2.28e-05 6.03e-06 3.49e-06 1.07e-05 6.79e-06 1.46e-05 6.45e-06 3.14e-06 1.09e-05 1.98e-05 2e-05 5.75e-06 3.23e-05 5.1e-06 7.53e-06 6.17e-06 1.61e-05 1.32e-05 1.01e-05 7.72e-07 1.23e-06 3.5e-06 6.89e-06 2.81e-06 1.72e-06 2.25e-06 2.23e-06 1.03e-06 1.2e-06 2.44e-05 2.92e-06 4.49e-07 1.98e-06 2.79e-06 2.62e-06 7.15e-07 4.43e-07