Genes within 1Mb (chr1:28572929:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060656 PTPRU -663587 eQTL 1.46e-02 0.325 0.133 0.0 0.0 0.0118
ENSG00000120656 TAF12 -70156 eQTL 1.69e-02 -0.0909 0.038 0.00178 0.0 0.0118
ENSG00000126709 IFI6 900731 eQTL 4.90e-02 0.128 0.0648 0.00153 0.0 0.0118
ENSG00000130766 SESN2 313411 eQTL 4.62e-03 -0.163 0.0574 0.0 0.0 0.0118
ENSG00000158161 EYA3 484292 eQTL 1.87e-03 0.284 0.0911 0.00581 0.00174 0.0118
ENSG00000169403 PTAFR 378993 eQTL 4.24e-01 -0.0591 0.0739 0.00101 0.0 0.0118
ENSG00000180198 RCC1 66986 pQTL 6.02e-03 -0.208 0.0757 0.0 0.00153 0.0119
ENSG00000180198 RCC1 66986 eQTL 4.73e-03 -0.264 0.0931 0.0 0.0 0.0118
ENSG00000198492 YTHDF2 -163692 eQTL 1.25e-02 -0.144 0.0575 0.0 0.0 0.0118
ENSG00000204138 PHACTR4 203347 eQTL 2.12e-02 -0.215 0.0932 0.00262 0.0 0.0118
ENSG00000214812 AL137792.1 451608 eQTL 2.49e-01 0.178 0.154 0.001 0.0 0.0118
ENSG00000225886 AL445490.1 903461 eQTL 2.07e-01 0.116 0.0921 0.00107 0.0 0.0118
ENSG00000279443 AL513497.1 28469 eQTL 3.84e-02 -0.348 0.168 0.00198 0.0 0.0118


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000060656 PTPRU -663587 2.74e-07 1.25e-07 3.69e-08 1.82e-07 8.83e-08 9.65e-08 1.53e-07 5.19e-08 1.44e-07 4.74e-08 1.62e-07 8.68e-08 1.41e-07 6.76e-08 6.04e-08 7.3e-08 3.94e-08 1.26e-07 5.75e-08 4.45e-08 1.13e-07 1.23e-07 1.39e-07 3.68e-08 1.4e-07 1.14e-07 1.08e-07 9.61e-08 1.09e-07 1.1e-07 9.64e-08 3.64e-08 3.73e-08 8.49e-08 8.76e-08 3.49e-08 5.59e-08 9.22e-08 6.55e-08 3.77e-08 5.13e-08 1.4e-07 5.24e-08 1.25e-08 5.15e-08 1.83e-08 1.21e-07 1.9e-09 4.81e-08
ENSG00000198492 YTHDF2 -163692 1.97e-06 2.62e-06 2.53e-07 1.22e-06 3.85e-07 7.21e-07 1.32e-06 4.32e-07 1.8e-06 7.21e-07 1.96e-06 1.39e-06 2.98e-06 9.92e-07 4e-07 1.02e-06 1.01e-06 1.29e-06 5.86e-07 4.94e-07 7.54e-07 1.99e-06 1.82e-06 5.72e-07 2.82e-06 9.49e-07 1.01e-06 1.26e-06 1.71e-06 1.67e-06 1.08e-06 2.39e-07 4.61e-07 6.19e-07 8.75e-07 5.24e-07 7.11e-07 3.38e-07 5.05e-07 3.32e-07 2.89e-07 3.06e-06 4.02e-07 1.91e-07 1.9e-07 2.28e-07 2.74e-07 1.96e-07 9.51e-08