Genes within 1Mb (chr1:28570841:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000000938 FGR 935656 eQTL 2.24e-01 -0.0293 0.0241 0.00102 0.0 0.0491
ENSG00000060656 PTPRU -665675 eQTL 7.13e-03 0.172 0.064 0.0 0.0 0.0491
ENSG00000126709 IFI6 898643 eQTL 1.54e-01 0.0446 0.0313 0.00104 0.0 0.0491
ENSG00000130766 SESN2 311323 eQTL 3.36e-02 -0.059 0.0277 0.0 0.0 0.0491
ENSG00000130770 ATP5IF1 334732 eQTL 1.03e-02 0.104 0.0404 0.0 0.0 0.0491
ENSG00000180198 RCC1 64898 eQTL 8.46e-07 -0.221 0.0445 0.0 0.0 0.0491
ENSG00000204138 PHACTR4 201259 eQTL 4.33e-03 -0.128 0.0449 0.0113 0.00422 0.0491
ENSG00000233427 AL009181.1 -306495 eQTL 4.38e-02 0.17 0.084 0.0 0.0 0.0491
ENSG00000233975 LINC02574 908119 eQTL 2.24e-01 0.0727 0.0598 0.001 0.0 0.0491
ENSG00000253304 TMEM200B -553062 eQTL 1.87e-02 -0.196 0.0831 0.0 0.0 0.0491
ENSG00000279443 AL513497.1 26381 eQTL 8.02e-02 -0.142 0.081 0.00129 0.0 0.0491


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000060656 PTPRU -665675 3.14e-07 1.51e-07 5.49e-08 2.09e-07 9.82e-08 8.45e-08 1.99e-07 5.62e-08 1.54e-07 7.6e-08 1.61e-07 1.22e-07 1.95e-07 8.13e-08 5.43e-08 8.08e-08 4.31e-08 1.64e-07 7.12e-08 5.2e-08 1.27e-07 1.42e-07 1.62e-07 3.07e-08 1.98e-07 1.31e-07 1.17e-07 1.17e-07 1.34e-07 1.03e-07 1.06e-07 3.39e-08 3.13e-08 9.52e-08 2.97e-08 2.68e-08 5.35e-08 8.61e-08 6.58e-08 3.67e-08 5.33e-08 1.55e-07 5.22e-08 1.44e-08 3.07e-08 1.71e-08 1.11e-07 1.92e-09 4.8e-08
ENSG00000198492 \N -165780 3.17e-06 2.75e-06 2.46e-07 1.86e-06 4.72e-07 8.4e-07 1.92e-06 6.85e-07 1.91e-06 9.63e-07 2.55e-06 1.41e-06 3.5e-06 1.34e-06 9.3e-07 1.61e-06 9.79e-07 2.26e-06 8.06e-07 1.19e-06 1.12e-06 3.02e-06 2.42e-06 1.03e-06 3.56e-06 1.33e-06 1.39e-06 1.85e-06 2.06e-06 1.67e-06 1.82e-06 3.02e-07 5.72e-07 1.22e-06 1.03e-06 9.86e-07 8.29e-07 3.86e-07 9.49e-07 3.47e-07 2.74e-07 3.43e-06 4.58e-07 2.07e-07 3.01e-07 3.1e-07 5.17e-07 2.19e-07 2.4e-07
ENSG00000279443 AL513497.1 26381 1.55e-05 1.87e-05 3.01e-06 9.91e-06 3.1e-06 7.23e-06 2.27e-05 3.42e-06 1.73e-05 8.98e-06 2.28e-05 8.37e-06 3.11e-05 7.21e-06 5.13e-06 1.03e-05 8.79e-06 1.43e-05 4.54e-06 4.26e-06 8.49e-06 1.73e-05 1.78e-05 5.19e-06 2.78e-05 5.51e-06 8.03e-06 7.86e-06 1.77e-05 1.52e-05 1.2e-05 1.24e-06 1.66e-06 4.69e-06 6.94e-06 4.01e-06 1.95e-06 2.7e-06 3.24e-06 2.03e-06 1.34e-06 2.34e-05 2.7e-06 2.69e-07 1.91e-06 2.77e-06 2.9e-06 1.24e-06 1.03e-06