Genes within 1Mb (chr1:28340025:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -890917 eQTL 3.57e-02 0.0547 0.026 0.00125 0.0 0.15
ENSG00000126698 DNAJC8 106996 eQTL 1.77e-03 -0.0651 0.0208 0.0 0.0 0.15
ENSG00000130770 ATP5IF1 103916 pQTL 4.61e-02 0.0343 0.0172 0.0 0.0 0.15
ENSG00000130770 ATP5IF1 103916 eQTL 9.97e-03 -0.0625 0.0242 0.0 0.0 0.15
ENSG00000142765 SYTL1 998005 eQTL 1.54e-01 -0.0308 0.0216 0.0011 0.0 0.15
ENSG00000158156 XKR8 380563 eQTL 3.99e-02 0.0637 0.031 0.0 0.0 0.15
ENSG00000158161 EYA3 251388 eQTL 2.76e-02 0.0582 0.0264 0.0 0.0 0.15
ENSG00000159023 EPB41 -547066 eQTL 1.09e-02 -0.0645 0.0253 0.00151 0.0 0.15
ENSG00000180198 RCC1 -165918 eQTL 6.21e-12 -0.183 0.0263 0.0 0.0 0.15
ENSG00000198492 YTHDF2 -396596 eQTL 6.13e-06 -0.075 0.0165 0.0 0.0 0.15
ENSG00000204138 PHACTR4 -29557 eQTL 6.13e-13 -0.192 0.0263 0.00666 0.0159 0.15
ENSG00000242125 SNHG3 -165955 eQTL 2.18e-02 0.0336 0.0146 0.0 0.0 0.15
ENSG00000271398 AL353622.2 92881 eQTL 8.20e-03 -0.102 0.0383 0.00102 0.0 0.15
ENSG00000279443 AL513497.1 -204435 eQTL 7.20e-02 -0.0874 0.0485 0.00105 0.0 0.15


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000158161 EYA3 251388 1.31e-06 1.13e-06 2.42e-07 1.14e-06 3.88e-07 6.25e-07 1.5e-06 4.54e-07 1.67e-06 6.28e-07 1.84e-06 8.93e-07 2.46e-06 2.59e-07 4.92e-07 9.54e-07 1.02e-06 9.7e-07 6.56e-07 4.51e-07 7.86e-07 1.89e-06 1.09e-06 5.67e-07 2.25e-06 7.38e-07 1.04e-06 9.17e-07 1.63e-06 1.23e-06 7.64e-07 2.42e-07 2.98e-07 5.79e-07 5.17e-07 5.15e-07 6.77e-07 3.42e-07 4.87e-07 3.21e-07 2.56e-07 1.63e-06 2.9e-07 1.06e-07 3.04e-07 2.35e-07 2.87e-07 1.45e-07 2.74e-07
ENSG00000180198 RCC1 -165918 3.06e-06 2.75e-06 5.62e-07 2.03e-06 8.3e-07 7.11e-07 2.11e-06 8.83e-07 2.27e-06 1.27e-06 2.52e-06 1.66e-06 3.71e-06 1.33e-06 8.99e-07 2.02e-06 1.54e-06 2.15e-06 1.61e-06 1.19e-06 1.39e-06 3.23e-06 2.74e-06 1.68e-06 3.92e-06 1.28e-06 1.48e-06 1.84e-06 2.77e-06 2.45e-06 1.94e-06 4.72e-07 6.65e-07 1.36e-06 1.63e-06 8.93e-07 8.57e-07 4.47e-07 1.27e-06 3.28e-07 2.23e-07 3.43e-06 6.49e-07 1.87e-07 3.62e-07 3.6e-07 8.3e-07 2.23e-07 2.09e-07
ENSG00000188060 \N -252175 1.27e-06 1.18e-06 2.4e-07 1.16e-06 3.86e-07 6.25e-07 1.53e-06 4.54e-07 1.68e-06 6.28e-07 1.84e-06 8.75e-07 2.46e-06 2.68e-07 4.89e-07 9.36e-07 1.03e-06 9.7e-07 7.08e-07 4.5e-07 7.86e-07 1.91e-06 1.05e-06 5.81e-07 2.25e-06 7.45e-07 1.02e-06 9.24e-07 1.61e-06 1.23e-06 7.64e-07 2.56e-07 2.82e-07 6.06e-07 5.15e-07 5.26e-07 6.77e-07 3.65e-07 4.58e-07 3.35e-07 2.56e-07 1.57e-06 3.01e-07 1.06e-07 3.04e-07 2.35e-07 2.87e-07 1.45e-07 2.61e-07
ENSG00000198492 YTHDF2 -396596 1.01e-06 6.65e-07 1.58e-07 4.31e-07 9.9e-08 3.08e-07 6.08e-07 2.28e-07 6.52e-07 3.1e-07 9.07e-07 5.08e-07 9.65e-07 1.58e-07 3.16e-07 3.4e-07 5.63e-07 4.31e-07 2.88e-07 2.27e-07 2.57e-07 5.18e-07 4.08e-07 2.71e-07 9.82e-07 2.64e-07 4.25e-07 3.24e-07 4.9e-07 7.63e-07 3.67e-07 4.34e-08 5.95e-08 1.93e-07 3.8e-07 1.82e-07 1.43e-07 1.14e-07 7.5e-08 1.56e-08 1.17e-07 6.11e-07 6.3e-08 1.11e-08 1.92e-07 3.46e-08 1.41e-07 7.19e-08 5.62e-08
ENSG00000204138 PHACTR4 -29557 1.25e-05 1.32e-05 2.73e-06 8.32e-06 2.96e-06 6.28e-06 1.88e-05 2.9e-06 1.4e-05 6.93e-06 1.79e-05 6.75e-06 2.46e-05 5.21e-06 4.38e-06 9.02e-06 7.91e-06 1.21e-05 4.36e-06 4.17e-06 7.43e-06 1.34e-05 1.37e-05 5.15e-06 2.41e-05 5.34e-06 7.59e-06 6.17e-06 1.61e-05 1.63e-05 8.99e-06 1.22e-06 1.71e-06 4.84e-06 6.34e-06 4.02e-06 2.04e-06 2.71e-06 3.2e-06 2.33e-06 1.63e-06 1.7e-05 2.23e-06 3.62e-07 1.85e-06 2.44e-06 2.62e-06 1.3e-06 1.06e-06
ENSG00000279443 AL513497.1 -204435 1.89e-06 2.19e-06 3.09e-07 1.35e-06 4.49e-07 7.18e-07 1.29e-06 6.01e-07 1.72e-06 7.18e-07 1.83e-06 1.43e-06 2.94e-06 7.96e-07 5.05e-07 1.15e-06 1.01e-06 1.44e-06 6.65e-07 9.54e-07 8.29e-07 2.26e-06 1.77e-06 1.02e-06 2.65e-06 1.21e-06 1.15e-06 1.29e-06 1.72e-06 1.64e-06 7.49e-07 3.04e-07 4.31e-07 1.12e-06 9.18e-07 7.45e-07 7.47e-07 4.49e-07 7.29e-07 2.23e-07 3.05e-07 2.46e-06 3.92e-07 1.91e-07 3.39e-07 3.47e-07 6.26e-07 2.26e-07 2e-07