Genes within 1Mb (chr1:28328558:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -902384 eQTL 3.67e-02 0.0544 0.026 0.00124 0.0 0.15
ENSG00000117758 STX12 555339 eQTL 1.33e-01 0.0283 0.0188 0.001 0.0 0.15
ENSG00000126698 DNAJC8 95529 eQTL 1.88e-03 -0.0647 0.0208 0.0 0.0 0.15
ENSG00000130770 ATP5IF1 92449 pQTL 4.37e-02 0.0346 0.0171 0.0 0.0 0.15
ENSG00000130770 ATP5IF1 92449 eQTL 1.06e-02 -0.0619 0.0242 0.0 0.0 0.15
ENSG00000142765 SYTL1 986538 eQTL 1.58e-01 -0.0305 0.0216 0.00109 0.0 0.15
ENSG00000158156 XKR8 369096 eQTL 3.86e-02 0.064 0.0309 0.0 0.0 0.15
ENSG00000158161 EYA3 239921 eQTL 2.75e-02 0.0582 0.0264 0.0 0.0 0.15
ENSG00000159023 EPB41 -558533 eQTL 1.11e-02 -0.0643 0.0253 0.0015 0.0 0.15
ENSG00000180198 RCC1 -177385 eQTL 6.12e-12 -0.183 0.0263 0.0 0.0 0.15
ENSG00000198492 YTHDF2 -408063 eQTL 7.09e-06 -0.0744 0.0165 0.0 0.0 0.15
ENSG00000204138 PHACTR4 -41024 eQTL 6.86e-13 -0.191 0.0262 0.00645 0.0148 0.15
ENSG00000242125 SNHG3 -177422 eQTL 2.29e-02 0.0333 0.0146 0.0 0.0 0.15
ENSG00000271398 AL353622.2 81414 eQTL 7.78e-03 -0.102 0.0383 0.00103 0.0 0.15
ENSG00000279443 AL513497.1 -215902 eQTL 6.84e-02 -0.0884 0.0485 0.00108 0.0 0.15


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000158161 EYA3 239921 5.53e-06 8.3e-06 1.24e-06 4.6e-06 1.66e-06 3.5e-06 8.88e-06 1.03e-06 6.39e-06 4.46e-06 7.55e-06 3.93e-06 9.88e-06 3.27e-06 2.18e-06 5.93e-06 2.96e-06 3.77e-06 2.23e-06 1.51e-06 3.64e-06 7.57e-06 5.37e-06 1.92e-06 1.18e-05 2.37e-06 4.54e-06 1.73e-06 6.07e-06 5.42e-06 4.13e-06 9.93e-07 5.21e-07 2.54e-06 3.15e-06 1.59e-06 9.95e-07 1.57e-06 1.61e-06 5.91e-07 7.88e-07 8.42e-06 1.4e-06 1.69e-07 6.91e-07 1.77e-06 9.55e-07 7.04e-07 4.63e-07
ENSG00000180198 RCC1 -177385 8.57e-06 1.13e-05 1.87e-06 7.03e-06 1.87e-06 4.9e-06 1.09e-05 1.5e-06 1.05e-05 5.73e-06 1.19e-05 5.73e-06 1.39e-05 3.56e-06 3.51e-06 7.01e-06 4.38e-06 7.37e-06 2.66e-06 2.63e-06 5.87e-06 1.05e-05 7.99e-06 3.25e-06 1.77e-05 4.03e-06 6.39e-06 3.57e-06 9.36e-06 7.84e-06 6.36e-06 9.67e-07 6.91e-07 3.06e-06 4.78e-06 2.28e-06 1.44e-06 1.84e-06 2.11e-06 9.98e-07 1.02e-06 1.28e-05 1.76e-06 1.7e-07 8.27e-07 1.89e-06 1.5e-06 7.39e-07 6.37e-07
ENSG00000188060 \N -263642 4.82e-06 6.73e-06 1.23e-06 4.15e-06 1.27e-06 2.58e-06 7.6e-06 9.6e-07 5.24e-06 4.11e-06 6.15e-06 2.94e-06 8.21e-06 2.39e-06 1.83e-06 5.1e-06 1.94e-06 3.93e-06 1.65e-06 1.21e-06 3.19e-06 7.56e-06 4.69e-06 1.7e-06 9.83e-06 2.18e-06 3.93e-06 1.55e-06 4.84e-06 4.4e-06 3.51e-06 8.22e-07 6.31e-07 2.22e-06 2.54e-06 1.29e-06 9.91e-07 1.25e-06 1.46e-06 4.88e-07 7.64e-07 7.04e-06 1.32e-06 1.65e-07 7.74e-07 1.67e-06 9.77e-07 8.24e-07 5.01e-07
ENSG00000198492 YTHDF2 -408063 2.66e-06 3.63e-06 8.13e-07 2.73e-06 4.89e-07 1.21e-06 2.43e-06 4.99e-07 2.75e-06 1.9e-06 2.45e-06 1.77e-06 3.69e-06 1.16e-06 1.47e-06 2.37e-06 1.22e-06 2.2e-06 1.42e-06 1.39e-06 1.79e-06 3.79e-06 3.01e-06 9.73e-07 4.62e-06 1.28e-06 2.15e-06 1.76e-06 2.61e-06 1.83e-06 2.02e-06 3.85e-07 4.15e-07 1.66e-06 2.04e-06 9.33e-07 9.41e-07 3.74e-07 8.5e-07 3.8e-07 3.06e-07 3.71e-06 3.65e-07 1.93e-07 3.47e-07 1.12e-06 8.74e-07 6.58e-07 5.73e-07
ENSG00000204138 PHACTR4 -41024 3.12e-05 3.29e-05 5.5e-06 1.51e-05 4.49e-06 1.34e-05 4.07e-05 3.72e-06 2.57e-05 1.31e-05 3.52e-05 1.48e-05 4.29e-05 1.27e-05 6.27e-06 1.59e-05 1.65e-05 2.17e-05 6.64e-06 5.36e-06 1.28e-05 2.94e-05 2.89e-05 7.73e-06 4.15e-05 7.48e-06 1.15e-05 9.69e-06 2.76e-05 2.37e-05 1.73e-05 1.62e-06 1.89e-06 5.98e-06 1.1e-05 4.5e-06 2.4e-06 2.76e-06 4.25e-06 2.77e-06 1.69e-06 4.06e-05 3.39e-06 2.73e-07 2.12e-06 3.29e-06 3.59e-06 1.31e-06 1.23e-06
ENSG00000279443 AL513497.1 -215902 6.54e-06 9.28e-06 1.3e-06 5.34e-06 1.71e-06 3.91e-06 9.71e-06 1.25e-06 8.38e-06 4.96e-06 9.14e-06 4.97e-06 1.12e-05 3.89e-06 2.66e-06 6.63e-06 3.77e-06 4.39e-06 2.55e-06 1.79e-06 4.63e-06 8.16e-06 6.57e-06 2.06e-06 1.31e-05 2.97e-06 4.74e-06 2.3e-06 7.05e-06 6.94e-06 4.77e-06 1.07e-06 7.34e-07 2.78e-06 3.62e-06 2.03e-06 1.04e-06 1.86e-06 2.01e-06 7.21e-07 8.23e-07 8.54e-06 1.38e-06 1.65e-07 7.51e-07 1.81e-06 9.78e-07 6.16e-07 5e-07