Genes within 1Mb (chr1:28273716:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060656 PTPRU -962800 eQTL 6.99e-03 -0.273 0.101 0.00137 0.0 0.0182
ENSG00000117758 STX12 500497 eQTL 8.31e-03 0.131 0.0496 0.00457 0.00136 0.0182
ENSG00000126698 DNAJC8 40687 eQTL 8.11e-14 -0.406 0.0535 0.0 0.00581 0.0182
ENSG00000126705 AHDC1 669285 eQTL 1.57e-02 0.123 0.0507 0.0024 0.0 0.0182
ENSG00000130766 SESN2 14198 eQTL 1.33e-03 -0.141 0.0437 0.0 0.0 0.0182
ENSG00000130770 ATP5IF1 37607 eQTL 1.56e-10 -0.406 0.0627 0.0 0.0 0.0182
ENSG00000130775 THEMIS2 401173 eQTL 1.25e-03 0.109 0.0338 0.00119 0.0 0.0182
ENSG00000159023 EPB41 -613375 eQTL 4.87e-02 0.132 0.0669 0.00178 0.0 0.0182
ENSG00000162419 GMEB1 -395016 eQTL 6.16e-02 -0.104 0.0555 0.00142 0.0 0.0182
ENSG00000169403 PTAFR 79780 eQTL 4.18e-03 0.161 0.056 0.00104 0.0 0.0182
ENSG00000174950 CD164L2 890383 eQTL 3.23e-02 -0.288 0.135 0.0 0.0 0.0182
ENSG00000181773 GPR3 881094 eQTL 7.27e-03 -0.257 0.0954 0.0 0.0 0.0182
ENSG00000198492 YTHDF2 -462905 eQTL 2.67e-01 0.0488 0.0439 0.00208 0.0 0.0182
ENSG00000214812 AL137792.1 152395 eQTL 8.88e-02 0.199 0.117 0.0013 0.0 0.0182
ENSG00000253304 TMEM200B -850187 eQTL 4.50e-02 0.264 0.131 0.0 0.0 0.0182
ENSG00000271398 AL353622.2 26572 eQTL 2.96e-02 -0.221 0.101 0.0 0.0 0.0182


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000060656 PTPRU -962800 2.66e-07 1.11e-07 3.49e-08 1.65e-07 1.03e-07 9.05e-08 1.42e-07 5.29e-08 1.37e-07 3.99e-08 1.6e-07 7.49e-08 1.26e-07 6.1e-08 4.48e-08 7.76e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.33e-07 1.03e-07 1.12e-07 8.27e-08 1.05e-07 1.1e-07 9.58e-08 3.29e-08 2.6e-08 8.09e-08 1.01e-07 4.23e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.37e-07 4.36e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000126698 DNAJC8 40687 0.000133 3.64e-05 1.01e-05 1.12e-05 3.5e-06 2.13e-05 4.22e-05 2.14e-06 1.9e-05 7.64e-06 2.78e-05 7.07e-06 5.78e-05 8.91e-06 5.66e-06 1.23e-05 1.03e-05 1.41e-05 7.02e-06 5.11e-06 8.88e-06 2.83e-05 3.95e-05 6.49e-06 3.01e-05 5.01e-06 8.89e-06 5.45e-06 3.95e-05 1.61e-05 1.31e-05 9.64e-07 1.81e-06 5.28e-06 8.46e-06 4.57e-06 1.74e-06 2.37e-06 2.22e-06 2.27e-06 1.03e-06 6.24e-05 6.91e-06 1.8e-07 2.81e-06 4.28e-06 2.95e-06 1.35e-06 1.65e-06
ENSG00000126705 AHDC1 669285 2.69e-07 1.06e-07 3.41e-08 1.68e-07 1.03e-07 9.3e-08 1.53e-07 5.24e-08 1.44e-07 4.23e-08 1.76e-07 7.58e-08 1.71e-07 6.07e-08 4.77e-08 7.89e-08 5.15e-08 1.06e-07 4.91e-08 2.88e-08 1.04e-07 1.26e-07 1.3e-07 5.19e-08 1.31e-07 1.03e-07 1.11e-07 8.49e-08 9.88e-08 1.1e-07 1.08e-07 3.29e-08 2.75e-08 8.02e-08 9.41e-08 4.26e-08 4.01e-08 8.48e-08 8.44e-08 3.96e-08 3.31e-08 1.46e-07 3.93e-08 0.0 1.15e-07 1.78e-08 1.46e-07 4.96e-09 4.72e-08
ENSG00000130766 SESN2 14198 0.000173 9.05e-05 1.94e-05 1.67e-05 7.6e-06 3.65e-05 9.05e-05 5.07e-06 5.34e-05 1.57e-05 7.36e-05 2.57e-05 0.000118 2.29e-05 1.16e-05 3.88e-05 3.57e-05 3.42e-05 1.41e-05 8.88e-06 2.04e-05 7.34e-05 0.00011 1.29e-05 6.61e-05 1.18e-05 2.38e-05 1.22e-05 8.47e-05 3.74e-05 3.41e-05 1.63e-06 3.57e-06 7.83e-06 1.25e-05 7.42e-06 2.98e-06 3.18e-06 4.95e-06 3.92e-06 1.63e-06 0.000132 1.5e-05 1.47e-07 5.71e-06 7.65e-06 4.82e-06 2.25e-06 2.97e-06
ENSG00000130770 ATP5IF1 37607 0.000138 3.98e-05 1.11e-05 1.17e-05 3.92e-06 2.24e-05 4.59e-05 2.43e-06 2.12e-05 8.28e-06 3.05e-05 7.98e-06 6.21e-05 9.68e-06 5.99e-06 1.42e-05 1.17e-05 1.56e-05 7.56e-06 5.3e-06 9.57e-06 3.17e-05 4.38e-05 7.31e-06 3.25e-05 5.34e-06 1.01e-05 6.04e-06 4.2e-05 1.77e-05 1.45e-05 1.03e-06 1.91e-06 5.42e-06 8.57e-06 4.48e-06 1.68e-06 2.4e-06 2.61e-06 2.5e-06 1e-06 6.67e-05 7.15e-06 1.82e-07 3e-06 4.68e-06 3.25e-06 1.52e-06 1.69e-06
ENSG00000130775 THEMIS2 401173 8.48e-07 1.59e-07 3.65e-08 2.05e-07 9.91e-08 1.25e-07 4.93e-07 5.2e-08 3.51e-07 6.4e-08 1.35e-06 9.19e-08 9.44e-07 7.64e-08 5.84e-08 9.11e-08 3.87e-08 1.27e-07 5.19e-08 3.88e-08 1.39e-07 2.7e-07 1.86e-07 4.16e-08 2.37e-07 1.09e-07 1.08e-07 9.61e-08 1.36e-07 1.59e-07 3.77e-07 3.19e-08 2.92e-08 8.89e-08 3.02e-08 3.93e-08 5.54e-08 9.06e-08 8.42e-08 3.69e-08 3.35e-08 8.45e-07 4.76e-08 0.0 1.01e-07 1.87e-08 1.3e-07 4.7e-09 4.72e-08
ENSG00000180098 \N -279369 1.28e-06 6.81e-07 7e-08 3.96e-07 9.79e-08 4.39e-07 1.32e-06 7.52e-08 1.41e-06 2.14e-07 1.91e-06 2.8e-07 2.25e-06 1.07e-07 6.2e-08 2.89e-07 8.64e-08 3.04e-07 7.39e-08 5.07e-08 2.72e-07 1.2e-06 5.82e-07 4.17e-08 1.06e-06 1.14e-07 1.29e-07 1.85e-07 7.07e-07 8.4e-07 7.84e-07 3.95e-08 3.46e-08 1.38e-07 3.48e-07 5.41e-08 5.11e-08 9.22e-08 6.63e-08 3.55e-08 4.35e-08 2.2e-06 5.78e-08 1.38e-08 5.59e-08 1.84e-08 1.18e-07 3.99e-09 4.74e-08
ENSG00000181773 GPR3 881094 2.66e-07 1.11e-07 3.49e-08 1.65e-07 1.03e-07 9.13e-08 1.41e-07 5.29e-08 1.42e-07 4.23e-08 1.57e-07 7.49e-08 1.33e-07 6.1e-08 4.77e-08 7.87e-08 5.15e-08 1.06e-07 4.91e-08 2.93e-08 1.03e-07 1.33e-07 1.31e-07 5.19e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.03e-07 1.09e-07 9.73e-08 3.29e-08 2.6e-08 8.09e-08 1.01e-07 4.23e-08 4.01e-08 8e-08 8.39e-08 3.96e-08 2.6e-08 1.31e-07 4.23e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08