JOB

PPTC7(ENSG00000196850)

View on Pheweb.jp , UCSC , GWAS Catalog , GTEx , gnomAD

Statistical fine-mapping results from Japan COVID-19 Task Force

(Shown only for PIP>0.001)

qtl plot

Variant ID	rs ID	TSS Distance	Category	P-value	Effect Size	Effect Size (se)	PIP (SuSiE)	PIP (FINEMAP)	MAF
chr12:110578825:T:G	rs16940902	-4493	eQTL	4.62e-02	0.0211	0.0106	0.0	0.0	0.472
chr12:110588297:G:A	\N	4979	eQTL	1.09e-02	0.283	0.111	0.00189	0.0	0.00245
chr12:110571591:T:C	\N	-11727	eQTL	4.52e-02	-0.0792	0.0395	0.0	0.0	0.0186
chr12:110567806:C:A	rs34191496	-15512	eQTL	9.21e-03	-0.0296	0.0113	0.00178	0.0	0.349
chr12:110564506:A:G	\N	-18812	eQTL	4.60e-02	0.0211	0.0106	0.0	0.0	0.472
chr12:110603605:G:A	\N	20287	eQTL	1.99e-02	-0.148	0.0636	0.00132	0.0	0.00687
chr12:110611207:GTGTT:G	\N	27889	eQTL	2.41e-02	0.12	0.0533	0.00115	0.0	0.0108
chr12:110614660:T:A	rs684596	31342	eQTL	2.06e-02	-0.0255	0.011	0.00104	0.0	0.395
chr12:110548714:G:A	\N	-34604	eQTL	3.60e-03	0.347	0.119	0.0011	0.00152	0.00196
chr12:110624735:G:A	rs11065682	41417	eQTL	4.14e-02	0.0216	0.0106	0.0	0.0	0.472
chr12:110537085:T:C	rs10849900	-46233	eQTL	2.05e-02	-0.0255	0.011	0.00105	0.0	0.395
chr12:110536041:A:C	rs3825391	-47277	eQTL	4.37e-02	0.0214	0.0106	0.0	0.0	0.471
chr12:110630865:C:T	\N	47547	eQTL	1.99e-02	-0.148	0.0636	0.00131	0.0	0.00687
chr12:110638018:C:T	rs11065687	54700	eQTL	4.18e-02	0.0216	0.0106	0.0	0.0	0.462
chr12:110528163:G:T	\N	-55155	eQTL	1.08e-02	0.284	0.111	0.00191	0.0	0.00245
chr12:110524485:C:T	\N	-58833	eQTL	4.62e-02	0.236	0.118	0.0	0.0	0.00196
chr12:110506494:G:C	rs61942603	-76824	eQTL	9.02e-03	-0.0301	0.0115	0.00182	0.00102	0.339
chr12:110668981:G:T	\N	85663	eQTL	1.20e-02	0.122	0.0485	0.00241	0.001	0.0118
chr12:110677247:C:T	\N	93929	eQTL	1.20e-02	0.122	0.0485	0.00242	0.001	0.0118
chr12:110677594:C:T	\N	94276	eQTL	2.21e-02	-0.218	0.0951	0.00126	0.0	0.00294
chr12:110679721:C:T	\N	96403	eQTL	5.60e-04	0.479	0.138	0.00406	0.00757	0.00147
chr12:110679796:T:C	rs11065692	96478	eQTL	2.93e-02	0.0235	0.0107	0.0	0.0	0.486
chr12:110484851:C:T	\N	-98467	eQTL	4.23e-02	-0.0815	0.0401	0.0	0.0	0.0186
chr12:110484084:C:T	rs138253333	-99234	eQTL	2.31e-02	0.102	0.045	0.00139	0.0	0.0137
chr12:110684301:CT:C	rs35081943	100983	eQTL	1.91e-02	0.0259	0.0111	0.00107	0.0	0.405
chr12:110684499:T:C	\N	101181	eQTL	4.16e-04	0.498	0.141	0.016	0.0177	0.00147
chr12:110688757:G:A	\N	105439	eQTL	2.53e-03	0.275	0.091	0.00508	0.00327	0.00343
chr12:110690314:C:T	\N	106996	eQTL	2.92e-02	0.113	0.0518	0.00118	0.0	0.0103
chr12:110695093:C:T	\N	111775	eQTL	2.45e-04	0.439	0.119	0.0216	0.0312	0.00196
chr12:110695843:A:T	\N	112525	eQTL	5.60e-04	0.479	0.138	0.00406	0.00757	0.00147
chr12:110470449:A:C	rs12369492	-112869	eQTL	9.08e-03	-0.03	0.0115	0.00182	0.00101	0.339
chr12:110467629:G:C	rs80133799	-115689	eQTL	3.42e-02	0.0293	0.0138	0.0	0.0	0.184
chr12:110466972:C:A	rs148708253	-116346	eQTL	2.22e-02	0.103	0.0448	0.00142	0.0	0.0137
chr12:110699743:A:T	rs12580187	116425	eQTL	6.81e-03	-0.041	0.0151	0.00215	0.00127	0.14
chr12:110701125:G:A	\N	117807	eQTL	2.56e-02	0.266	0.119	0.0014	0.0	0.00196
chr12:110702741:A:G	\N	119423	eQTL	9.21e-03	0.0294	0.0113	0.00177	0.0	0.363
chr12:110462190:G:A	\N	-121128	eQTL	3.73e-02	0.385	0.184	0.0	0.0	0.00147
chr12:110450005:G:GGA	\N	-133313	eQTL	7.13e-03	0.0305	0.0113	0.00192	0.00119	0.374
chr12:110446929:C:T	\N	-136389	eQTL	3.61e-02	-0.237	0.113	0.00101	0.0	0.00245
chr12:110441421:A:G	rs12822385	-141897	eQTL	1.35e-02	0.0275	0.0111	0.00133	0.0	0.384
chr12:110725907:T:C	\N	142589	eQTL	3.30e-02	0.0243	0.0114	0.0	0.0	0.373
chr12:110727849:TGAGA:T	\N	144531	eQTL	4.52e-03	0.342	0.12	0.00367	0.00212	0.00196
chr12:110728615:CAAAAA:C	rs149540624	145297	eQTL	3.99e-02	0.0288	0.014	0.0	0.0	0.175
chr12:110730084:C:T	\N	146766	eQTL	4.81e-02	-0.19	0.0962	0.0	0.0	0.00343
chr12:110730938:C:T	rs10774604	147620	eQTL	3.88e-02	0.0237	0.0114	0.0	0.0	0.369
chr12:110433707:G:A	rs191413396	-149611	eQTL	2.24e-02	0.103	0.045	0.00141	0.0	0.0137
chr12:110431833:A:G	\N	-151485	eQTL	2.83e-03	0.269	0.0898	0.00473	0.00297	0.00343
chr12:110735300:A:C	\N	151982	eQTL	4.24e-02	0.0928	0.0457	0.0	0.0	0.0132
chr12:110421297:C:T	rs11065637	-162021	eQTL	6.62e-03	0.0307	0.0113	0.002	0.00126	0.375
chr12:110421296:T:C	rs11065636	-162022	eQTL	6.62e-03	0.0307	0.0113	0.002	0.00126	0.375
chr12:110750262:C:T	rs11065711	166944	eQTL	9.82e-03	0.0289	0.0112	0.00156	0.0	0.396
chr12:110751738:T:G	rs10161511	168420	eQTL	1.26e-02	0.0274	0.011	0.00138	0.0	0.398
chr12:110406384:C:T	rs28811332	-176934	eQTL	1.27e-02	0.028	0.0112	0.00137	0.0	0.382
chr12:110760504:C:T	rs12231451	177186	eQTL	1.71e-02	0.0254	0.0106	0.00112	0.0	0.461
chr12:110405656:A:G	rs28813775	-177662	eQTL	7.63e-03	0.0299	0.0112	0.00182	0.00112	0.381
chr12:110762832:G:A	rs9668929	179514	eQTL	5.12e-03	0.0312	0.0111	0.00229	0.00155	0.395
chr12:110403574:G:A	rs75347070	-179744	eQTL	4.41e-03	-0.0422	0.0148	0.00277	0.00181	0.136
chr12:110403269:G:A	\N	-180049	eQTL	8.26e-03	0.31	0.117	0.00223	0.00116	0.00245
chr12:110397725:G:A	\N	-185593	eQTL	2.57e-02	-0.136	0.0611	0.00113	0.0	0.00736
chr12:110772328:C:T	\N	189010	eQTL	5.77e-04	0.478	0.138	0.00396	0.00736	0.00147
chr12:110391516:G:A	\N	-191802	eQTL	2.30e-02	-0.219	0.0961	0.00125	0.0	0.00294
chr12:110391231:A:C	rs28555214	-192087	eQTL	2.21e-02	0.0253	0.011	0.00101	0.0	0.39
chr12:110777734:A:G	\N	194416	eQTL	5.74e-04	0.478	0.138	0.00397	0.0074	0.00147
chr12:110387506:C:T	\N	-195812	eQTL	6.17e-04	0.475	0.138	0.00374	0.00691	0.00147
chr12:110781635:A:C	rs850518	198317	eQTL	1.56e-02	-0.0257	0.0106	0.00117	0.0	0.461
chr12:110384134:G:A	rs28816104	-199184	eQTL	4.31e-02	0.0213	0.0105	0.0	0.0	0.474
chr12:110381484:G:A	\N	-201834	eQTL	2.20e-02	0.142	0.0619	0.00135	0.0	0.00834
chr12:110789858:C:T	\N	206540	eQTL	4.56e-02	0.105	0.0527	0.0	0.0	0.00981
chr12:110790794:A:G	rs10774605	207476	eQTL	8.21e-03	-0.0298	0.0113	0.00185	0.00107	0.36
chr12:110791841:C:T	rs850517	208523	eQTL	1.29e-02	-0.0269	0.0108	0.00132	0.0	0.414
chr12:110792775:C:G	\N	209457	eQTL	1.21e-02	-0.0272	0.0108	0.00139	0.0	0.41
chr12:110793670:A:G	rs850515	210352	eQTL	7.59e-03	-0.0289	0.0108	0.00177	0.00112	0.412
chr12:110794758:A:T	rs850514	211440	eQTL	7.68e-03	-0.0289	0.0108	0.00176	0.00111	0.412
chr12:110796494:G:A	rs12825235	213176	eQTL	1.25e-02	-0.0272	0.0109	0.00137	0.0	0.407
chr12:110369069:G:A	rs139084282	-214249	eQTL	3.23e-02	0.0927	0.0432	0.0	0.0	0.0162
chr12:110797917:G:A	rs2879525	214599	eQTL	5.95e-03	-0.031	0.0112	0.00223	0.0014	0.359
chr12:110801552:C:T	rs2520218	218234	eQTL	7.41e-03	-0.029	0.0108	0.00183	0.00114	0.407
chr12:110801555:A:G	rs2520217	218237	eQTL	8.33e-03	-0.0285	0.0108	0.00168	0.00103	0.412
chr12:110802017:T:C	rs850511	218699	eQTL	7.51e-03	-0.0288	0.0107	0.00178	0.00113	0.412
chr12:110802741:T:G	rs850510	219423	eQTL	7.77e-03	-0.0288	0.0108	0.00175	0.0011	0.412
chr12:110362139:A:G	rs12811603	-221179	eQTL	1.67e-02	0.0269	0.0112	0.00119	0.0	0.381
chr12:110804557:C:T	rs850509	221239	eQTL	6.89e-03	-0.0293	0.0108	0.00191	0.00122	0.408
chr12:110805157:T:C	\N	221839	eQTL	7.73e-03	-0.0289	0.0108	0.00175	0.0011	0.412
chr12:110805158:G:A	\N	221840	eQTL	7.73e-03	-0.0289	0.0108	0.00175	0.00111	0.412
chr12:110805214:G:A	\N	221896	eQTL	5.47e-03	-0.0301	0.0108	0.00217	0.00147	0.408
chr12:110806534:T:C	rs6489925	223216	eQTL	7.87e-03	-0.0288	0.0108	0.00174	0.00109	0.413
chr12:110808288:T:C	rs10083024	224970	eQTL	6.90e-03	-0.0293	0.0108	0.00188	0.0012	0.415
chr12:110808649:T:C	rs7958142	225331	eQTL	6.90e-03	-0.0293	0.0108	0.00188	0.00121	0.415
chr12:110808836:G:A	rs7974845	225518	eQTL	6.90e-03	-0.0293	0.0108	0.00188	0.00121	0.415
chr12:110357403:A:T	\N	-225915	eQTL	7.24e-03	0.287	0.107	0.0	0.0	0.00245
chr12:110810820:C:T	rs11065724	227502	eQTL	4.65e-03	-0.0314	0.0111	0.00239	0.00168	0.398
chr12:110810839:T:C	rs7966263	227521	eQTL	6.96e-03	-0.0293	0.0108	0.00187	0.0012	0.415
chr12:110810973:T:C	rs6489954	227655	eQTL	6.90e-03	-0.0293	0.0108	0.00188	0.00119	0.415
chr12:110811099:C:T	rs7136934	227781	eQTL	5.98e-03	-0.0299	0.0109	0.00208	0.00136	0.41
chr12:110812699:A:G	\N	229381	eQTL	2.43e-02	0.119	0.0528	0.00138	0.0	0.0118
chr12:110829811:G:A	\N	246493	eQTL	2.78e-02	0.12	0.0544	0.00104	0.0	0.0108
chr12:110335639:A:C	\N	-247679	eQTL	5.00e-02	-0.157	0.0799	0.0	0.0	0.00442
chr12:110333038:G:A	\N	-250280	eQTL	2.80e-03	0.269	0.0898	0.00476	0.00299	0.00343
chr12:110838568:C:T	rs34461307	255250	eQTL	4.94e-03	-0.0312	0.0111	0.00242	0.00163	0.395
chr12:110839428:T:A	rs2239192	256110	eQTL	5.01e-03	-0.0311	0.0111	0.0024	0.00159	0.395
chr12:110841293:G:T	\N	257975	eQTL	4.62e-03	0.332	0.117	0.00363	0.00205	0.00196
chr12:110841659:C:T	rs886131	258341	eQTL	3.44e-03	-0.0324	0.0111	0.00292	0.00212	0.395
chr12:110844414:G:A	\N	261096	eQTL	4.60e-03	0.331	0.117	0.00364	0.00211	0.00196
chr12:110847068:G:C	rs2339635	263750	eQTL	4.90e-02	-0.023	0.0117	0.0	0.0	0.282
chr12:110847217:G:C	rs2339636	263899	eQTL	4.51e-02	-0.0233	0.0116	0.0	0.0	0.288
chr12:110847494:G:A	rs2238148	264176	eQTL	4.15e-02	-0.0236	0.0116	0.0	0.0	0.288
chr12:110847524:T:C	rs2299666	264206	eQTL	4.28e-02	-0.0234	0.0116	0.0	0.0	0.288
chr12:110848177:G:T	rs2299667	264859	eQTL	4.24e-02	-0.0235	0.0116	0.0	0.0	0.288
chr12:110848290:A:G	rs7980320	264972	eQTL	4.16e-02	-0.0237	0.0116	0.0	0.0	0.283
chr12:110849922:T:C	rs2283348	266604	eQTL	4.40e-02	-0.0234	0.0116	0.0	0.0	0.282
chr12:110854781:T:A	rs756838	271463	eQTL	4.57e-02	-0.0231	0.0115	0.0	0.0	0.288
chr12:110856666:C:CAGAT	rs10649493	273348	eQTL	4.88e-02	-0.023	0.0117	0.0	0.0	0.283
chr12:110859150:CTG:C	rs375368571	275832	eQTL	3.25e-02	0.0939	0.0439	0.00109	0.0	0.0137
chr12:110859895:C:T	\N	276577	eQTL	1.17e-02	0.266	0.105	0.0018	0.0	0.00245
chr12:110297583:C:T	\N	-285735	eQTL	1.89e-02	-0.209	0.0889	0.00144	0.0	0.00343
chr12:110874143:C:T	\N	290825	eQTL	1.05e-02	0.269	0.105	0.00192	0.0	0.00245
chr12:110876565:C:G	\N	293247	eQTL	2.41e-02	0.308	0.136	0.00136	0.0	0.00147
chr12:110888718:C:T	\N	305400	eQTL	3.73e-02	-0.123	0.0589	0.0	0.0	0.00883
chr12:110907620:C:T	rs374888790	324302	eQTL	1.88e-02	0.0839	0.0357	0.00164	0.0	0.0226
chr12:110915167:G:A	\N	331849	eQTL	2.25e-02	0.281	0.123	0.00138	0.0	0.00196
chr12:110916941:C:G	\N	333623	eQTL	3.05e-02	0.196	0.0905	0.00109	0.0	0.00393
chr12:110921127:G:A	\N	337809	eQTL	1.39e-02	0.408	0.165	0.00177	0.0	0.00147
chr12:110241532:T:C	\N	-341786	eQTL	3.04e-02	0.182	0.0839	0.00121	0.0	0.00393
chr12:110235432:A:G	\N	-347886	eQTL	2.85e-02	0.113	0.0516	0.00107	0.0	0.0113
chr12:110933935:C:T	\N	350617	eQTL	2.60e-02	0.177	0.0795	0.0	0.0	0.00491
chr12:110951725:G:A	\N	368407	eQTL	4.82e-03	0.335	0.118	0.00353	0.00202	0.00196
chr12:110957728:G:A	\N	374410	eQTL	4.28e-02	-0.172	0.0848	0.0	0.0	0.00343
chr12:110960229:G:A	rs142192185	376911	eQTL	1.54e-02	0.0877	0.0362	0.00194	0.0	0.024
chr12:110202166:G:A	\N	-381152	eQTL	3.30e-02	0.182	0.0852	0.00114	0.0	0.00393
chr12:110189628:C:T	\N	-393690	eQTL	4.84e-02	-0.202	0.102	0.0	0.0	0.00245
chr12:110979420:G:A	\N	396102	eQTL	1.17e-02	0.138	0.0548	0.00214	0.0	0.0103
chr12:110990822:G:A	rs117623594	407504	eQTL	2.24e-02	0.0876	0.0383	0.00158	0.0	0.0201
chr12:110172598:G:A	\N	-410720	eQTL	8.23e-03	0.311	0.117	0.00224	0.00117	0.00245
chr12:110172186:T:G	\N	-411132	eQTL	1.91e-02	0.341	0.145	0.00166	0.0	0.00196
chr12:110169806:G:A	\N	-413512	eQTL	2.90e-02	0.113	0.0515	0.00106	0.0	0.0113
chr12:110997952:T:C	rs60929041	414634	eQTL	2.54e-03	-0.0552	0.0182	0.00411	0.00282	0.0868
chr12:111001306:A:G	rs117686235	417988	eQTL	2.52e-03	-0.0554	0.0183	0.00412	0.00283	0.0868
chr12:110164795:G:A	rs58423087	-418523	eQTL	4.46e-02	-0.0369	0.0184	0.0	0.0	0.0868
chr12:111002000:C:A	rs117931611	418682	eQTL	1.91e-02	-0.0797	0.034	0.00138	0.0	0.026
chr12:110139981:A:G	\N	-443337	eQTL	8.23e-03	0.311	0.117	0.00224	0.0012	0.00245
chr12:111029021:T:C	\N	445703	eQTL	4.89e-02	-0.293	0.148	0.0	0.0	0.00147
chr12:110129490:C:T	rs144612492	-453828	eQTL	2.30e-02	0.113	0.0496	0.00144	0.0	0.0113
chr12:111038920:T:C	rs59261535	455602	eQTL	4.89e-02	-0.0977	0.0495	0.0	0.0	0.0123
chr12:111044823:C:T	\N	461505	eQTL	5.21e-03	0.328	0.117	0.00356	0.0019	0.00196
chr12:111049616:G:A	\N	466298	eQTL	2.66e-03	0.408	0.136	0.00576	0.0035	0.00147
chr12:110107546:A:T	\N	-475772	eQTL	2.10e-03	0.514	0.167	0.00135	0.00241	0.00147
chr12:111062695:C:T	rs12580277	479377	eQTL	3.22e-03	-0.0569	0.0193	0.00354	0.00229	0.0824
chr12:111072481:A:G	\N	489163	eQTL	4.21e-02	-0.136	0.0669	0.0	0.0	0.00638
chr12:111073904:G:A	rs79151982	490586	eQTL	2.78e-02	0.123	0.0556	0.00123	0.0	0.00932
chr12:111084605:C:T	\N	501287	eQTL	1.80e-02	-0.166	0.0702	0.00145	0.0	0.00589
chr12:111121657:C:T	\N	538339	eQTL	4.33e-02	0.151	0.0749	0.0	0.0	0.00491
chr12:110039502:G:A	\N	-543816	eQTL	8.34e-03	0.376	0.142	0.00281	0.00127	0.00147
chr12:111128884:C:T	\N	545566	eQTL	4.92e-03	0.334	0.118	0.00349	0.00199	0.00196
chr12:110034682:C:A	\N	-548636	eQTL	2.86e-02	0.113	0.0515	0.00107	0.0	0.0108
chr12:111133097:C:G	\N	549779	eQTL	4.59e-02	0.181	0.0905	0.0	0.0	0.00343
chr12:110025826:A:G	\N	-557492	eQTL	3.34e-02	0.343	0.161	0.00104	0.0	0.00147
chr12:111150161:C:T	rs140253800	566843	eQTL	3.21e-02	0.0868	0.0404	0.00126	0.0	0.0177
chr12:111155616:C:A	\N	572298	eQTL	3.65e-02	0.124	0.059	0.00118	0.0	0.00883
chr12:111164641:A:G	\N	581323	eQTL	4.15e-02	0.154	0.0753	0.0	0.0	0.00491
chr12:111177515:C:T	rs144309533	594197	eQTL	1.83e-02	0.0854	0.0361	0.0016	0.0	0.0221
chr12:109984739:G:A	\N	-598579	eQTL	4.61e-02	0.234	0.117	0.0	0.0	0.00196
chr12:109984713:T:C	\N	-598605	eQTL	3.90e-02	-0.223	0.108	0.00106	0.0	0.00245
chr12:109977040:A:G	\N	-606278	eQTL	3.74e-03	0.371	0.128	0.00101	0.00146	0.00196
chr12:109967951:C:G	\N	-615367	eQTL	2.20e-02	-0.221	0.0964	0.00129	0.0	0.00294
chr12:109957687:T:C	rs78399408	-625631	eQTL	1.85e-02	-0.0466	0.0197	0.00176	0.0	0.0805
chr12:111210894:C:T	\N	627576	eQTL	4.59e-02	-0.162	0.0809	0.00101	0.0	0.00442
chr12:109950360:A:T	\N	-632958	eQTL	3.40e-02	-0.277	0.13	0.00104	0.0	0.00245
chr12:109945484:A:C	rs79257972	-637834	eQTL	5.10e-02	-0.0547	0.028	0.00104	0.0	0.0373
chr12:111221437:G:A	\N	638119	eQTL	1.92e-03	0.318	0.102	0.00552	0.00406	0.00245
chr12:109943634:G:A	\N	-639684	eQTL	3.34e-02	0.343	0.161	0.00104	0.0	0.00147
chr12:109931645:G:T	rs76830423	-651673	eQTL	1.56e-02	-0.0807	0.0333	0.0022	0.0	0.026
chr12:109931225:CAT:C	\N	-652093	eQTL	2.29e-02	0.121	0.0533	0.00148	0.0	0.0113
chr12:111242876:CTGG:C	\N	659558	eQTL	3.84e-02	-0.171	0.0823	0.00111	0.0	0.00442
chr12:109919410:G:A	\N	-663908	eQTL	1.19e-02	0.344	0.137	0.00183	0.0	0.00196
chr12:111247692:G:A	\N	664374	eQTL	4.14e-02	-0.241	0.118	0.0	0.0	0.00196
chr12:109915275:C:T	\N	-668043	eQTL	9.54e-03	0.381	0.147	0.00262	0.00114	0.00147
chr12:109913629:G:A	\N	-669689	eQTL	2.62e-02	0.111	0.0498	0.00112	0.0	0.0113
chr12:109906939:T:C	\N	-676379	eQTL	1.03e-02	0.372	0.145	0.0025	0.00107	0.00147
chr12:109906933:G:A	rs144596120	-676385	eQTL	3.74e-02	0.108	0.0517	0.00109	0.0	0.0113
chr12:109894890:G:A	rs77801022	-688428	eQTL	5.00e-02	-0.0512	0.0261	0.0	0.0	0.0466
chr12:109878988:C:T	\N	-704330	eQTL	2.45e-02	0.117	0.0519	0.00139	0.0	0.0113
chr12:109873318:C:T	\N	-710000	eQTL	2.57e-03	0.253	0.0838	0.00495	0.00322	0.00393
chr12:109873015:A:AGTTTT	\N	-710303	eQTL	2.70e-02	0.11	0.0496	0.0011	0.0	0.0113
chr12:109868764:ATTAACT:A	\N	-714554	eQTL	4.95e-02	0.109	0.0552	0.0	0.0	0.00981
chr12:111302094:C:A	\N	718776	eQTL	3.47e-02	0.122	0.0577	0.0	0.0	0.00883
chr12:109860759:T:C	rs183421373	-722559	eQTL	3.94e-02	-0.104	0.0504	0.00107	0.0	0.0123
chr12:109848126:A:G	\N	-735192	eQTL	2.91e-02	0.393	0.18	0.00112	0.0	0.00147
chr12:109847483:G:A	\N	-735835	eQTL	1.54e-02	-0.215	0.0886	0.00148	0.0	0.00393
chr12:111323352:T:A	\N	740034	eQTL	5.47e-03	0.342	0.123	0.00325	0.00181	0.00196
chr12:109840758:A:G	rs5011383	-742560	eQTL	1.28e-02	-0.0316	0.0127	0.00186	0.0	0.231
chr12:109838819:G:T	rs57498833	-744499	eQTL	1.29e-03	-0.0426	0.0132	0.00646	0.00532	0.211
chr12:111334383:A:G	\N	751065	eQTL	4.78e-02	0.249	0.126	0.0	0.0	0.00196
chr12:109816535:T:C	rs553638741	-766783	eQTL	1.91e-02	-0.0928	0.0395	0.00159	0.0	0.0206
chr12:109806752:T:TC	rs200706734	-776566	eQTL	4.09e-02	0.0505	0.0246	0.00103	0.0	0.052
chr12:109804500:T:A	\N	-778818	eQTL	2.09e-02	-0.244	0.106	0.00129	0.0	0.00245
chr12:109802346:A:G	\N	-780972	eQTL	2.12e-02	-0.244	0.106	0.00128	0.0	0.00245
chr12:109784386:G:A	\N	-798932	eQTL	1.33e-02	0.259	0.104	0.0	0.0	0.00294
chr12:111384910:C:T	\N	801592	eQTL	7.21e-03	0.361	0.134	0.00242	0.00136	0.00147
chr12:109771049:C:G	\N	-812269	eQTL	4.16e-02	-0.206	0.101	0.0	0.0	0.00294
chr12:109767901:TAAG:T	rs371352811	-815417	eQTL	2.78e-02	0.107	0.0487	0.0012	0.0	0.0128
chr12:109766425:G:A	\N	-816893	eQTL	2.92e-02	-0.197	0.09	0.00111	0.0	0.00393
chr12:111400279:G:A	\N	816961	eQTL	9.99e-03	-0.356	0.138	0.00217	0.0	0.00147
chr12:109766331:C:T	rs11068183	-816987	eQTL	3.70e-02	-0.0315	0.0151	0.0	0.0	0.147
chr12:109765012:G:A	rs74665569	-818306	eQTL	3.74e-02	-0.0372	0.0178	0.0	0.0	0.0986
chr12:111409269:G:A	\N	825951	eQTL	4.84e-03	-0.136	0.048	0.00383	0.00201	0.0128
chr12:111411711:G:T	rs7309325	828393	eQTL	3.81e-02	0.0303	0.0146	0.0	0.0	0.147
chr12:109747757:G:A	\N	-835561	eQTL	3.24e-02	-0.168	0.0785	0.0	0.0	0.00491
chr12:109745778:T:A	rs76932829	-837540	eQTL	4.61e-02	-0.0244	0.0122	0.0	0.0	0.245
chr12:109741760:G:T	\N	-841558	eQTL	2.15e-02	-0.244	0.106	0.00127	0.0	0.00245
chr12:109741105:G:A	\N	-842213	eQTL	4.27e-06	0.671	0.145	0.894	0.547	0.00196
chr12:111425903:G:A	\N	842585	eQTL	3.19e-02	-0.275	0.128	0.0	0.0	0.00196
chr12:111426880:T:C	rs10849947	843562	eQTL	1.76e-02	0.0343	0.0144	0.00134	0.0	0.155
chr12:111430333:C:T	\N	847015	eQTL	3.58e-02	-0.1	0.0478	0.0	0.0	0.0137
chr12:111432986:T:A	rs77700500	849668	eQTL	2.80e-02	-0.0431	0.0196	0.0	0.0	0.079
chr12:111433337:A:T	rs4766462	850019	eQTL	2.41e-02	0.0326	0.0144	0.00111	0.0	0.153
chr12:109732923:G:A	rs16940521	-850395	eQTL	4.30e-02	0.0453	0.0224	0.00105	0.0	0.0648
chr12:109732892:C:T	\N	-850426	eQTL	4.62e-02	0.0652	0.0327	0.0	0.0	0.0275
chr12:109732571:C:T	\N	-850747	eQTL	4.60e-04	-0.492	0.14	0.0192	0.0151	0.00147
chr12:111435859:G:T	rs75062686	852541	eQTL	4.26e-02	-0.0402	0.0198	0.0	0.0	0.0765
chr12:109729263:A:G	\N	-854055	eQTL	5.81e-03	0.343	0.124	0.0	0.00102	0.00196
chr12:111437606:A:G	rs10849948	854288	eQTL	3.26e-02	0.0309	0.0145	0.0	0.0	0.153
chr12:111440722:T:C	rs7296313	857404	eQTL	2.73e-02	0.0319	0.0144	0.00104	0.0	0.153
chr12:111444681:C:A	rs2238154	861363	eQTL	1.29e-02	0.0354	0.0142	0.00159	0.0	0.157
chr12:109720337:G:A	\N	-862981	eQTL	1.44e-02	-0.181	0.074	0.00161	0.0	0.0054
chr12:111449855:A:G	rs739496	866537	eQTL	2.62e-02	0.0321	0.0144	0.00106	0.0	0.153
chr12:111452342:T:C	rs117066377	869024	eQTL	2.42e-02	-0.0446	0.0197	0.00105	0.0	0.0775
chr12:109714196:CCCGCTGCCGCCGCCGCCG:C	\N	-869122	eQTL	2.20e-02	0.137	0.0597	0.00169	0.0	0.00834
chr12:111455733:A:G	rs10849949	872415	eQTL	4.96e-02	0.0289	0.0147	0.0	0.0	0.145
chr12:111456427:CA:C	rs10708872	873109	eQTL	4.55e-02	0.0294	0.0147	0.0	0.0	0.146
chr12:111457399:C:G	rs2301622	874081	eQTL	4.55e-02	0.0294	0.0147	0.0	0.0	0.146
chr12:111463400:C:A	rs1557685	880082	eQTL	1.75e-02	0.0343	0.0144	0.00135	0.0	0.154
chr12:111467937:T:C	\N	884619	eQTL	2.61e-02	-0.278	0.125	0.0	0.0	0.00196
chr12:109698277:C:T	\N	-885041	eQTL	3.03e-02	0.133	0.0614	0.00138	0.0	0.00834
chr12:109697843:G:A	\N	-885475	eQTL	1.73e-02	0.391	0.164	0.00156	0.0	0.00147
chr12:109695204:G:C	rs181396723	-888114	eQTL	1.67e-02	-0.0913	0.0381	0.00154	0.0	0.0191
chr12:111472786:C:G	rs111818253	889468	eQTL	1.62e-02	0.0348	0.0144	0.00141	0.0	0.154
chr12:111473108:G:A	rs10849951	889790	eQTL	2.06e-02	0.0335	0.0145	0.00123	0.0	0.154
chr12:111481506:C:CA	rs60746537	898188	eQTL	4.49e-02	0.0295	0.0147	0.0	0.0	0.146
chr12:111482364:G:T	rs7976462	899046	eQTL	4.34e-02	0.0297	0.0147	0.0	0.0	0.146
chr12:109679220:T:C	rs4766617	-904098	eQTL	4.11e-02	-0.0249	0.0122	0.0	0.0	0.256
chr12:109679077:TGGCGGTTCTCCAA:T	rs143891250	-904241	eQTL	4.99e-02	-0.0255	0.013	0.0	0.0	0.232
chr12:111489097:T:C	rs1029388	905779	eQTL	4.54e-02	0.0294	0.0147	0.0	0.0	0.146
chr12:111492596:T:C	rs7138498	909278	eQTL	4.54e-02	0.0294	0.0147	0.0	0.0	0.146
chr12:111505200:T:C	rs587914	921882	eQTL	4.52e-02	0.0294	0.0147	0.0	0.0	0.146
chr12:111507320:C:T	\N	924002	eQTL	4.16e-02	-0.224	0.11	0.0	0.0	0.00245
chr12:111508631:A:G	rs614591	925313	eQTL	4.52e-02	0.0294	0.0147	0.0	0.0	0.145
chr12:109657212:G:C	\N	-926106	eQTL	1.49e-04	-0.52	0.137	0.0349	0.0484	0.00147
chr12:111514046:C:T	rs628825	930728	eQTL	2.05e-02	0.0335	0.0144	0.00124	0.0	0.154
chr12:111514363:C:T	rs630512	931045	eQTL	2.04e-02	0.0335	0.0144	0.00124	0.0	0.154
chr12:111518718:CACA:C	\N	935400	eQTL	2.90e-02	-0.279	0.127	0.0	0.0	0.00196
chr12:111521216:T:C	\N	937898	eQTL	2.90e-02	-0.279	0.127	0.0	0.0	0.00196
chr12:111526132:T:C	rs863691	942814	eQTL	4.67e-02	0.0293	0.0147	0.0	0.0	0.145
chr12:109640261:C:T	\N	-943057	eQTL	1.60e-02	0.274	0.114	0.00159	0.0	0.00245
chr12:111527854:C:A	rs657197	944536	eQTL	4.57e-02	0.0294	0.0147	0.0	0.0	0.145
chr12:111528408:A:C	\N	945090	eQTL	2.91e-02	-0.279	0.127	0.0	0.0	0.00196
chr12:111531584:ATAC:A	rs34967963	948266	eQTL	4.56e-02	0.0294	0.0147	0.0	0.0	0.145
chr12:111537019:A:G	rs619010	953701	eQTL	4.57e-02	0.0294	0.0147	0.0	0.0	0.145
chr12:109624076:C:T	\N	-959242	eQTL	1.55e-02	0.275	0.114	0.00162	0.0	0.00245
chr12:111545003:C:A	\N	961685	eQTL	2.56e-02	-0.33	0.148	0.00113	0.0	0.00196
chr12:109612819:G:A	\N	-970499	eQTL	8.86e-03	0.313	0.119	0.0	0.0	0.00196
chr12:111565579:G:T	rs616513	982261	eQTL	4.66e-02	0.0293	0.0147	0.0	0.0	0.145
chr12:109599010:A:AC	\N	-984308	eQTL	4.31e-03	0.405	0.142	0.0	0.00127	0.00196
chr12:111570438:C:T	rs650887	987120	eQTL	4.47e-02	0.0295	0.0147	0.0	0.0	0.145
chr12:109595277:A:C	\N	-988041	eQTL	1.21e-03	0.431	0.133	0.00816	0.00653	0.00147
chr12:111573851:C:T	\N	990533	eQTL	2.66e-02	-0.184	0.0827	0.00131	0.0	0.00442
chr12:111575444:G:A	\N	992126	eQTL	3.78e-02	-0.183	0.0878	0.0	0.0	0.00393
chr12:111581995:G:T	rs12369009	998677	eQTL	4.49e-02	-0.0294	0.0146	0.0	0.0	0.145

Expression Fold Change in Massively Parallel Reporter Assay (MPRA)

[Click here to download the full results]

mpra plot

Variant ID	rs ID	TSS Distance	P-Value	Expression Fold Change	Tier	Cell Type
chr12:110467629:G:C	rs80133799	-115689	0.473	0.224	None	K562
chr12:110467629:G:C	rs80133799	-115689	0.556	0.263	None	HepG2
chr12:110728615:CAAAAA:C	rs149540624	145297	0.5	0.155	None	K562
chr12:110728615:CAAAAA:C	rs149540624	145297	0.876	0.0293	None	HepG2
chr12:111411711:G:T	rs7309325	828393	0.0931	0.597	None	K562
chr12:111411711:G:T	rs7309325	828393	0.181	0.526	None	HepG2
chr12:111426880:T:C	rs10849947	843562	0.268	0.168	None	K562
chr12:111426880:T:C	rs10849947	843562	0.508	-0.131	None	HepG2
chr12:111437606:A:G	rs10849948	854288	0.473	0.185	None	K562
chr12:111437606:A:G	rs10849948	854288	0.222	-0.238	None	HepG2
chr12:111440722:T:C	rs7296313	857404	0.497	-0.123	None	K562
chr12:111440722:T:C	rs7296313	857404	0.0643	-0.442	None	HepG2
chr12:111449855:A:G	rs739496	866537	0.0219	-1.12	None	K562
chr12:111449855:A:G	rs739496	866537	0.637	-0.347	None	HepG2
chr12:111455733:A:G	rs10849949	872415	0.0692	-1.36	None	K562
chr12:111456427:CA:C	rs10708872	873109	0.453	0.197	None	K562
chr12:111456427:CA:C	rs10708872	873109	0.298	0.514	None	HepG2
chr12:111457399:C:G	rs2301622	874081	0.00881	-0.739	None	K562
chr12:111457399:C:G	rs2301622	874081	0.359	-0.237	None	HepG2
chr12:111463400:C:A	rs1557685	880082	0.0283	-0.261	None	K562
chr12:111463400:C:A	rs1557685	880082	0.402	0.14	None	HepG2
chr12:111472786:C:G	rs111818253	889468	0.627	0.0983	None	K562
chr12:111472786:C:G	rs111818253	889468	0.477	-0.232	None	HepG2
chr12:111473108:G:A	rs10849951	889790	0.566	-0.0911	None	K562
chr12:111473108:G:A	rs10849951	889790	0.301	-0.162	None	HepG2
chr12:111481506:C:CA	rs60746537	898188	0.745	0.0774	None	K562
chr12:111481506:C:CA	rs60746537	898188	0.0507	0.858	None	HepG2
chr12:111482364:G:T	rs7976462	899046	0.442	0.0961	None	K562
chr12:111482364:G:T	rs7976462	899046	0.97	0.00597	None	HepG2
chr12:111489097:T:C	rs1029388	905779	0.043	-0.675	None	K562
chr12:111489097:T:C	rs1029388	905779	0.921	0.0332	None	HepG2
chr12:111492596:T:C	rs7138498	909278	0.951	-0.0136	None	K562
chr12:111492596:T:C	rs7138498	909278	0.265	-0.312	None	HepG2
chr12:111505200:T:C	rs587914	921882	0.202	0.596	None	K562
chr12:111505200:T:C	rs587914	921882	0.791	0.0889	None	HepG2
chr12:111508631:A:G	rs614591	925313	0.991	0.00188	None	K562
chr12:111508631:A:G	rs614591	925313	0.997	0.000863	None	HepG2
chr12:111514363:C:T	rs630512	931045	0.993	-0.00185	None	K562
chr12:111514363:C:T	rs630512	931045	0.156	-0.63	None	HepG2
chr12:111526132:T:C	rs863691	942814	0.639	0.119	None	K562
chr12:111526132:T:C	rs863691	942814	0.131	-0.582	None	HepG2
chr12:111527854:C:A	rs657197	944536	0.552	-0.221	None	K562
chr12:111527854:C:A	rs657197	944536	0.0301	-1.14	None	HepG2
chr12:111531584:ATAC:A	rs34967963	948266	0.74	-0.0854	None	K562
chr12:111531584:ATAC:A	rs34967963	948266	0.433	-0.247	None	HepG2
chr12:111537019:A:G	rs619010	953701	0.349	-0.204	None	K562
chr12:111537019:A:G	rs619010	953701	0.623	-0.126	None	HepG2
chr12:111565579:G:T	rs616513	982261	0.0851	-1.22	None	K562
chr12:111570438:C:T	rs650887	987120	0.238	0.409	None	K562
chr12:111570438:C:T	rs650887	987120	0.339	0.553	None	HepG2