JOB

RNU11(ENSG00000274978)

View on Pheweb.jp , UCSC , GWAS Catalog , GTEx , gnomAD

Statistical fine-mapping results from Japan COVID-19 Task Force

(Shown only for PIP>0.001)

qtl plot

Variant ID	rs ID	TSS Distance	Category	P-value	Effect Size	Effect Size (se)	PIP (FINEMAP)	MAF
chr1:28654070:C:T	rs146466207	5470	eQTL	1.34e-03	0.355	0.11	0.00767	0.0206
chr1:28654348:C:T	rs190675662	5748	eQTL	4.23e-02	0.372	0.183	0.0	0.00736
chr1:28630447:G:A	rs185123116	-18153	eQTL	4.79e-02	0.287	0.145	0.0	0.0142
chr1:28670663:C:T	rs147178559	22063	eQTL	1.60e-03	0.342	0.108	0.00642	0.0216
chr1:28625669:G:A	rs374503540	-22931	eQTL	1.63e-03	0.348	0.11	0.00629	0.0206
chr1:28621894:A:G	\N	-26706	eQTL	4.37e-02	0.55	0.272	0.0	0.00343
chr1:28676335:T:C	\N	27735	eQTL	1.93e-02	-0.348	0.149	0.0	0.0128
chr1:28620630:G:GT	\N	-27970	eQTL	3.05e-02	0.57	0.263	0.0	0.00343
chr1:28680580:C:T	\N	31980	eQTL	1.46e-02	0.876	0.358	0.00105	0.00196
chr1:28616085:G:C	\N	-32515	eQTL	1.44e-02	0.973	0.397	0.00109	0.00147
chr1:28688725:C:G	\N	40125	eQTL	9.75e-03	0.948	0.366	0.00147	0.00196
chr1:28604249:A:G	rs150790713	-44351	eQTL	5.00e-02	0.233	0.119	0.0	0.0182
chr1:28587420:A:C	\N	-61180	eQTL	6.31e-03	0.923	0.337	0.00207	0.00245
chr1:28710636:C:T	\N	62036	eQTL	6.71e-03	0.766	0.282	0.0019	0.00294
chr1:28579249:A:G	\N	-69351	eQTL	4.57e-02	0.533	0.266	0.0	0.00393
chr1:28719622:G:A	\N	71022	eQTL	3.03e-02	-0.358	0.165	0.0	0.0103
chr1:28569599:G:A	\N	-79001	eQTL	1.78e-02	0.325	0.137	0.0	0.0132
chr1:28568487:C:T	rs144972858	-80113	eQTL	1.80e-02	-0.269	0.113	0.0	0.024
chr1:28566248:G:A	rs13373966	-82352	eQTL	2.14e-03	0.134	0.0434	0.00492	0.166
chr1:28559996:G:A	rs148757396	-88604	eQTL	2.21e-02	-0.256	0.112	0.0	0.0245
chr1:28737650:C:T	\N	89050	eQTL	4.24e-02	-0.308	0.152	0.0	0.0123
chr1:28558456:C:T	\N	-90144	eQTL	1.80e-02	-0.269	0.113	0.0	0.024
chr1:28738822:C:T	\N	90222	eQTL	8.22e-03	0.902	0.34	0.00169	0.00245
chr1:28555165:G:C	\N	-93435	eQTL	6.22e-03	0.925	0.337	0.0021	0.00245
chr1:28744218:G:T	\N	95618	eQTL	4.24e-02	-0.308	0.152	0.0	0.0123
chr1:28744425:T:C	rs144060624	95825	eQTL	2.19e-03	0.331	0.108	0.00479	0.0211
chr1:28747231:A:G	\N	98631	eQTL	2.38e-03	1.3	0.427	0.00468	0.00147
chr1:28544001:C:T	\N	-104599	eQTL	2.62e-02	-0.249	0.112	0.0	0.0255
chr1:28761077:T:C	\N	112477	eQTL	3.11e-02	-0.356	0.165	0.0	0.0103
chr1:28766952:C:T	rs191321016	118352	eQTL	1.63e-02	-0.27	0.112	0.0	0.0236
chr1:28768112:G:A	rs148572421	119512	eQTL	2.46e-02	0.222	0.0987	0.0	0.028
chr1:28526756:C:T	\N	-121844	eQTL	1.03e-02	0.928	0.361	0.00142	0.00196
chr1:28776412:G:A	\N	127812	eQTL	3.54e-02	-0.347	0.165	0.0	0.00981
chr1:28508491:T:C	\N	-140109	eQTL	1.61e-02	0.514	0.213	0.001	0.0054
chr1:28495061:T:C	\N	-153539	eQTL	1.61e-02	0.514	0.213	0.001	0.0054
chr1:28491301:A:T	rs139782392	-157299	eQTL	3.90e-03	-0.375	0.13	0.00302	0.0186
chr1:28806811:G:T	rs145539820	158211	eQTL	1.32e-02	0.378	0.152	0.00112	0.0108
chr1:28812140:G:A	\N	163540	eQTL	3.97e-02	0.456	0.221	0.0	0.00442
chr1:28472142:G:A	rs189354000	-176458	eQTL	4.09e-03	0.312	0.109	0.00281	0.0216
chr1:28461778:C:T	\N	-186822	eQTL	3.96e-02	0.561	0.272	0.0	0.00343
chr1:28842445:G:T	rs4654323	193845	eQTL	4.97e-02	-0.117	0.0598	0.0	0.0721
chr1:28453512:A:G	\N	-195088	eQTL	3.86e-02	0.561	0.271	0.0	0.00343
chr1:28849272:G:T	\N	200672	eQTL	2.96e-02	-0.693	0.318	0.0	0.00196
chr1:28849330:A:T	\N	200730	eQTL	2.12e-03	0.507	0.165	0.00496	0.00932
chr1:28441880:T:G	rs61783851	-206720	eQTL	4.95e-02	-0.131	0.0664	0.0	0.0608
chr1:28858031:G:A	\N	209431	eQTL	1.26e-02	0.642	0.257	0.00115	0.00393
chr1:28426859:A:C	\N	-221741	eQTL	3.86e-02	0.561	0.271	0.0	0.00343
chr1:28879968:C:G	rs148137011	231368	eQTL	4.61e-03	0.369	0.13	0.00256	0.0157
chr1:28881068:G:C	rs145586704	232468	eQTL	4.61e-03	0.369	0.13	0.00256	0.0157
chr1:28881279:C:T	rs117811235	232679	eQTL	2.38e-03	0.399	0.131	0.00447	0.0152
chr1:28910045:C:A	rs142089266	261445	eQTL	3.50e-02	-0.277	0.131	0.0	0.0167
chr1:28384187:A:G	\N	-264413	eQTL	4.49e-02	-0.642	0.32	0.0	0.00245
chr1:28357546:C:T	\N	-291054	eQTL	2.64e-03	0.407	0.135	0.00411	0.0137
chr1:28942064:T:A	\N	293464	eQTL	2.37e-03	1.17	0.383	0.00468	0.00196
chr1:28959468:C:T	\N	310868	eQTL	2.30e-02	0.902	0.396	0.0	0.00147
chr1:28960282:A:T	\N	311682	eQTL	8.28e-03	0.685	0.259	0.00161	0.00343
chr1:28961409:G:T	rs146094697	312809	eQTL	3.44e-03	0.381	0.13	0.00329	0.0147
chr1:28980103:C:T	\N	331503	eQTL	8.00e-03	0.691	0.26	0.00166	0.00343
chr1:28312384:A:AAT	\N	-336216	eQTL	3.94e-02	-0.284	0.138	0.0	0.0142
chr1:28311110:C:G	\N	-337490	eQTL	4.32e-02	0.446	0.22	0.0	0.00491
chr1:28993381:G:A	\N	344781	eQTL	3.20e-02	0.459	0.214	0.0	0.00442
chr1:28301444:G:C	\N	-347156	eQTL	3.58e-02	0.561	0.267	0.0	0.00343
chr1:29008035:A:G	\N	359435	eQTL	1.06e-02	0.891	0.348	0.00135	0.00196
chr1:28288568:G:A	\N	-360032	eQTL	3.54e-02	-0.606	0.288	0.0	0.00343
chr1:29013717:C:T	\N	365117	eQTL	7.21e-03	0.7	0.26	0.0018	0.00343
chr1:29017772:G:A	\N	369172	eQTL	4.31e-02	-0.268	0.132	0.0	0.0162
chr1:29052684:C:T	rs116955240	404084	eQTL	3.62e-03	0.376	0.129	0.00315	0.0147
chr1:28236083:C:A	\N	-412517	eQTL	3.01e-02	-0.625	0.288	0.0	0.00196
chr1:28232300:C:T	\N	-416300	eQTL	3.29e-02	0.906	0.424	0.0	0.00147
chr1:28227447:C:T	\N	-421153	eQTL	6.75e-03	0.55	0.203	0.00197	0.0054
chr1:29082557:T:A	rs76497715	433957	eQTL	6.32e-03	0.352	0.129	0.00191	0.0152
chr1:28209092:G:GA	rs559113897	-439508	eQTL	3.47e-02	0.355	0.168	0.0	0.00981
chr1:29097851:C:T	\N	449251	eQTL	9.67e-03	0.651	0.251	0.00147	0.00393
chr1:29100869:C:T	rs151186404	452269	eQTL	3.96e-02	0.208	0.101	0.0	0.024
chr1:28190814:C:G	\N	-457786	eQTL	3.47e-02	0.559	0.264	0.0	0.00343
chr1:28186280:C:T	\N	-462320	eQTL	2.42e-02	-0.651	0.288	0.0	0.00294
chr1:28165587:T:G	\N	-483013	eQTL	4.63e-02	0.257	0.129	0.0	0.0167
chr1:29138442:C:A	rs12032470	489842	eQTL	3.26e-02	-0.156	0.0728	0.0	0.0461
chr1:28154521:T:G	\N	-494079	eQTL	3.42e-02	0.557	0.262	0.0	0.00343
chr1:29144331:G:C	rs6426352	495731	eQTL	3.30e-02	-0.156	0.0729	0.0	0.0461
chr1:29149463:G:A	rs10915233	500863	eQTL	3.29e-02	-0.156	0.0729	0.0	0.0461
chr1:29149551:CA:C	\N	500951	eQTL	5.49e-03	0.747	0.268	0.00223	0.00343
chr1:28147491:C:G	\N	-501109	eQTL	1.16e-02	0.501	0.198	0.0013	0.00638
chr1:28140284:C:T	\N	-508316	eQTL	1.38e-02	0.722	0.293	0.00112	0.00294
chr1:29157389:C:T	rs151253986	508789	eQTL	2.06e-02	-0.342	0.147	0.0	0.0113
chr1:29158963:C:T	rs71514297	510363	eQTL	3.30e-02	-0.156	0.0729	0.0	0.0461
chr1:29162516:A:G	rs79140458	513916	eQTL	4.64e-02	0.28	0.141	0.0	0.0113
chr1:29167354:T:C	rs4654391	518754	eQTL	3.30e-02	-0.156	0.0729	0.0	0.0461
chr1:28128631:G:A	\N	-519969	eQTL	2.65e-02	0.786	0.354	0.0	0.00196
chr1:29177007:G:GT	rs142212000	528407	eQTL	3.30e-02	-0.156	0.0729	0.0	0.0461
chr1:29183241:C:T	\N	534641	eQTL	2.06e-02	0.92	0.397	0.0	0.00147
chr1:28111474:C:A	\N	-537126	eQTL	4.91e-02	0.822	0.417	0.0	0.00147
chr1:29191909:T:C	rs6661685	543309	eQTL	3.31e-02	-0.156	0.0729	0.0	0.0461
chr1:29195193:C:T	rs12738007	546593	eQTL	3.31e-02	-0.156	0.0729	0.0	0.0461
chr1:28100106:A:G	\N	-548494	eQTL	1.99e-02	1.09	0.468	0.0	0.00147
chr1:29203431:C:T	rs12032476	554831	eQTL	3.31e-02	-0.156	0.0729	0.0	0.0461
chr1:29204008:G:A	rs116966553	555408	eQTL	2.06e-02	-0.341	0.147	0.0	0.0113
chr1:29205554:G:T	\N	556954	eQTL	9.89e-03	0.649	0.251	0.00145	0.00393
chr1:28090632:C:T	\N	-557968	eQTL	2.78e-02	-0.431	0.196	0.0	0.00687
chr1:29207925:G:A	\N	559325	eQTL	2.28e-02	-0.167	0.0733	0.0	0.0456
chr1:29218489:CTGA:C	\N	569889	eQTL	1.60e-02	-0.935	0.388	0.0	0.00196
chr1:29226446:C:A	rs7522989	577846	eQTL	4.73e-02	-0.146	0.0737	0.0	0.0461
chr1:29236440:A:G	rs143468964	587840	eQTL	1.47e-02	-0.293	0.12	0.00107	0.0186
chr1:29236547:C:T	\N	587947	eQTL	4.71e-02	-0.146	0.0737	0.0	0.0461
chr1:29236595:G:C	rs533411359	587995	eQTL	2.39e-02	0.229	0.101	0.0	0.025
chr1:28055403:G:T	\N	-593197	eQTL	3.14e-02	-0.876	0.406	0.0	0.00196
chr1:29260007:C:T	\N	611407	eQTL	9.99e-03	0.648	0.251	0.00144	0.00393
chr1:29260851:C:T	rs115945321	612251	eQTL	1.47e-02	0.261	0.107	0.00104	0.0216
chr1:29263942:C:T	rs143205283	615342	eQTL	1.49e-02	0.263	0.108	0.00103	0.0216
chr1:29264793:G:A	\N	616193	eQTL	4.21e-02	0.411	0.202	0.0	0.00638
chr1:29273450:G:T	\N	624850	eQTL	1.80e-03	1.23	0.393	0.00598	0.00147
chr1:28021458:G:A	\N	-627142	eQTL	4.16e-02	-0.502	0.246	0.0	0.00393
chr1:29294936:C:T	\N	646336	eQTL	3.41e-02	-0.96	0.453	0.0	0.00147
chr1:29300551:C:T	\N	651951	eQTL	3.07e-02	-0.419	0.193	0.0	0.00785
chr1:27986781:C:G	\N	-661819	eQTL	4.73e-02	-0.806	0.406	0.0	0.00147
chr1:29320921:C:G	\N	672321	eQTL	3.72e-02	-0.492	0.236	0.0	0.00442
chr1:29324997:T:C	\N	676397	eQTL	3.70e-02	-0.493	0.236	0.0	0.00442
chr1:29344148:T:G	\N	695548	eQTL	3.80e-02	0.865	0.416	0.0	0.00147
chr1:29345213:T:C	\N	696613	eQTL	2.61e-02	-0.601	0.27	0.0	0.00393
chr1:29357710:T:TG	\N	709110	eQTL	2.13e-02	-0.646	0.28	0.0	0.00343
chr1:27932356:A:C	rs539107824	-716244	eQTL	1.09e-02	0.394	0.154	0.00132	0.0108
chr1:27930248:C:T	\N	-718352	eQTL	2.76e-02	0.324	0.147	0.0	0.0123
chr1:29369122:C:T	rs550890594	720522	eQTL	4.38e-02	-0.358	0.177	0.0	0.00883
chr1:29377298:C:T	\N	728698	eQTL	4.34e-02	-0.372	0.184	0.0	0.00834
chr1:29377819:G:A	\N	729219	eQTL	1.59e-02	0.75	0.31	0.0	0.00245
chr1:29378503:A:C	\N	729903	eQTL	2.58e-02	0.466	0.209	0.0	0.00589
chr1:27911620:A:G	\N	-736980	eQTL	3.77e-02	-0.385	0.185	0.0	0.00736
chr1:29391475:C:A	\N	742875	eQTL	1.87e-02	0.735	0.312	0.0	0.00245
chr1:29392143:T:C	rs4654337	743543	eQTL	4.60e-02	0.083	0.0415	0.0	0.239
chr1:29404707:C:A	rs59884059	756107	eQTL	4.08e-02	-0.276	0.135	0.0	0.0142
chr1:27887613:G:C	\N	-760987	eQTL	1.68e-02	0.489	0.204	0.0	0.00589
chr1:29415674:C:T	\N	767074	eQTL	1.28e-02	1.08	0.432	0.00122	0.00147
chr1:29428192:A:G	\N	779592	eQTL	6.88e-03	0.733	0.271	0.00196	0.00343
chr1:27868401:C:G	\N	-780199	eQTL	4.93e-02	0.814	0.414	0.0	0.00147
chr1:27867616:G:A	\N	-780984	eQTL	4.46e-02	-0.582	0.29	0.0	0.00294
chr1:29439637:A:G	\N	791037	eQTL	4.16e-02	0.0727	0.0356	0.0	0.25
chr1:29439729:T:C	rs6702829	791129	eQTL	4.87e-02	0.0632	0.032	0.0	0.372
chr1:29439856:A:AG	\N	791256	eQTL	2.96e-02	0.0768	0.0353	0.0	0.256
chr1:29439863:C:T	\N	791263	eQTL	2.96e-02	0.0768	0.0353	0.0	0.256
chr1:29446721:T:C	rs34059284	798121	eQTL	2.39e-02	0.26	0.115	0.0	0.0201
chr1:29447698:A:G	rs12022470	799098	eQTL	4.32e-02	0.064	0.0316	0.0	0.432
chr1:29449886:C:T	rs12562206	801286	eQTL	4.91e-02	0.0621	0.0315	0.0	0.433
chr1:29450357:G:T	rs72889169	801757	eQTL	4.60e-02	0.063	0.0315	0.0	0.433
chr1:29451392:A:G	rs7554243	802792	eQTL	4.24e-02	0.0638	0.0314	0.0	0.433
chr1:29451589:T:C	rs7514421	802989	eQTL	3.93e-02	0.0648	0.0314	0.0	0.433
chr1:29452483:G:A	rs10915278	803883	eQTL	3.48e-02	0.0664	0.0314	0.0	0.432
chr1:29453232:G:T	rs10799136	804632	eQTL	3.37e-02	0.0687	0.0323	0.0	0.362
chr1:29453313:A:G	rs7515453	804713	eQTL	3.37e-02	0.0661	0.0311	0.0	0.439
chr1:29454203:G:A	rs7550157	805603	eQTL	2.91e-02	0.0707	0.0323	0.0	0.362
chr1:29454245:C:T	rs7514218	805645	eQTL	2.91e-02	0.0707	0.0323	0.0	0.362
chr1:29454314:T:TG	rs58538569	805714	eQTL	4.24e-02	0.0638	0.0314	0.0	0.433
chr1:29454958:TGAGTCTACAGGGACTG:T	rs112503519	806358	eQTL	3.76e-02	0.0657	0.0315	0.0	0.435
chr1:29455094:C:G	rs10915279	806494	eQTL	4.10e-02	0.0643	0.0314	0.0	0.433
chr1:29455096:G:C	rs10915280	806496	eQTL	4.22e-02	0.0639	0.0314	0.0	0.433
chr1:29455161:C:T	rs10753339	806561	eQTL	3.79e-02	-0.0809	0.0389	0.0	0.195
chr1:29455189:T:C	rs10915281	806589	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29455307:T:C	rs10915282	806707	eQTL	3.73e-02	0.0657	0.0315	0.0	0.433
chr1:29455312:T:C	rs10799137	806712	eQTL	3.73e-02	0.0657	0.0315	0.0	0.433
chr1:29455407:A:G	rs10915283	806807	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29455539:G:A	rs10915285	806939	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29455892:G:T	rs12049218	807292	eQTL	3.63e-02	0.066	0.0315	0.0	0.433
chr1:29455954:G:T	rs60017507	807354	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29455956:C:G	rs59743020	807356	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29455957:A:AATGC	rs140552032	807357	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29456166:T:C	rs7527772	807566	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29456658:A:T	rs6673164	808058	eQTL	3.84e-02	0.0654	0.0315	0.0	0.432
chr1:29456770:T:C	rs6676357	808170	eQTL	4.36e-02	0.0637	0.0315	0.0	0.434
chr1:29456812:G:A	rs6658888	808212	eQTL	4.64e-02	0.0628	0.0315	0.0	0.433
chr1:29456882:A:G	rs12563023	808282	eQTL	2.71e-02	0.0699	0.0316	0.0	0.433
chr1:29456928:G:C	rs6658999	808328	eQTL	3.21e-02	0.0678	0.0316	0.0	0.434
chr1:29456963:G:T	rs6659091	808363	eQTL	3.20e-02	0.0676	0.0315	0.0	0.433
chr1:29457046:G:A	rs6659190	808446	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29457096:T:C	rs6676690	808496	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29457198:T:G	rs10915286	808598	eQTL	3.61e-02	0.0661	0.0315	0.0	0.433
chr1:29457243:C:A	rs4654351	808643	eQTL	4.12e-02	-0.0791	0.0387	0.0	0.195
chr1:29457561:G:A	rs7517272	808961	eQTL	3.59e-02	0.0662	0.0315	0.0	0.433
chr1:29457831:C:T	rs7526490	809231	eQTL	4.35e-02	0.0637	0.0315	0.0	0.437
chr1:29457869:C:T	rs7526562	809269	eQTL	4.37e-02	0.0636	0.0315	0.0	0.437
chr1:27836660:C:T	\N	-811940	eQTL	5.96e-03	1.07	0.39	0.00218	0.00196
chr1:29460683:C:T	\N	812083	eQTL	4.09e-02	-0.619	0.302	0.0	0.00294
chr1:29472641:A:G	\N	824041	eQTL	3.99e-02	1.05	0.513	0.0	0.00147
chr1:27821880:T:A	\N	-826720	eQTL	3.93e-02	-0.887	0.43	0.0	0.00147
chr1:29476774:G:T	\N	828174	eQTL	1.20e-02	1.06	0.422	0.00126	0.00147
chr1:27801219:C:T	\N	-847381	eQTL	3.61e-02	-0.4	0.191	0.0	0.00687
chr1:29505475:C:T	rs143809383	856875	eQTL	2.32e-02	-0.194	0.0853	0.0	0.0407
chr1:27791097:C:T	\N	-857503	eQTL	2.72e-02	-0.33	0.149	0.0	0.0132
chr1:29511296:G:T	rs180978009	862696	eQTL	3.44e-02	-0.234	0.111	0.0	0.0255
chr1:27773582:A:G	\N	-875018	eQTL	2.68e-02	0.389	0.175	0.0	0.00932
chr1:29525943:T:G	\N	877343	eQTL	2.10e-02	-0.788	0.341	0.0	0.00196
chr1:27770818:CA:C	rs370389188	-877782	eQTL	7.11e-03	0.397	0.147	0.0019	0.0123
chr1:29526512:C:T	rs61783794	877912	eQTL	4.11e-02	-0.0749	0.0366	0.0	0.269
chr1:29527409:C:T	rs80174287	878809	eQTL	2.15e-02	-0.0824	0.0358	0.0	0.276
chr1:29527666:A:G	rs12069482	879066	eQTL	2.22e-02	-0.0816	0.0356	0.0	0.281
chr1:29528163:A:C	\N	879563	eQTL	2.73e-02	-0.0785	0.0355	0.0	0.284
chr1:29528175:G:A	rs12074279	879575	eQTL	2.50e-02	-0.0801	0.0357	0.0	0.279
chr1:29528228:T:G	rs12071830	879628	eQTL	2.73e-02	-0.0785	0.0355	0.0	0.284
chr1:29528343:C:T	\N	879743	eQTL	2.01e-02	0.746	0.32	0.0	0.00245
chr1:29528374:C:G	rs12085922	879774	eQTL	2.77e-02	-0.0783	0.0355	0.0	0.284
chr1:29528415:G:T	rs76255985	879815	eQTL	2.22e-02	-0.0816	0.0356	0.0	0.281
chr1:29528485:C:A	\N	879885	eQTL	2.75e-02	-0.0784	0.0355	0.0	0.284
chr1:29528518:A:G	rs6685212	879918	eQTL	2.74e-02	-0.0784	0.0355	0.0	0.284
chr1:29528591:C:T	rs6675083	879991	eQTL	2.74e-02	-0.0784	0.0355	0.0	0.284
chr1:29528957:G:A	rs6426340	880357	eQTL	2.68e-02	-0.0791	0.0357	0.0	0.279
chr1:29528973:A:G	rs6426341	880373	eQTL	3.17e-02	-0.0765	0.0356	0.0	0.283
chr1:29529821:T:TAAATC	\N	881221	eQTL	2.73e-02	-0.0785	0.0355	0.0	0.284
chr1:29530227:T:A	rs10915170	881627	eQTL	2.67e-02	-0.0792	0.0357	0.0	0.279
chr1:29530257:C:T	rs10915171	881657	eQTL	2.72e-02	-0.0786	0.0355	0.0	0.284
chr1:29530332:T:C	rs10915172	881732	eQTL	2.67e-02	-0.0792	0.0357	0.0	0.279
chr1:29530734:T:C	rs12074849	882134	eQTL	2.66e-02	-0.0792	0.0357	0.0	0.279
chr1:29530832:C:T	rs6664165	882232	eQTL	2.67e-02	-0.0792	0.0357	0.0	0.279
chr1:29531075:T:C	rs6679576	882475	eQTL	3.02e-02	-0.0766	0.0353	0.0	0.284
chr1:29531304:A:C	rs6677105	882704	eQTL	3.24e-02	-0.0755	0.0352	0.0	0.284
chr1:29531418:G:A	rs6688300	882818	eQTL	3.09e-02	-0.0767	0.0355	0.0	0.279
chr1:29532090:G:A	rs12079964	883490	eQTL	3.16e-02	-0.077	0.0358	0.0	0.276
chr1:29532366:G:A	rs61783811	883766	eQTL	3.06e-02	-0.0778	0.0359	0.0	0.271
chr1:29532428:T:C	rs7536950	883828	eQTL	3.14e-02	-0.0771	0.0358	0.0	0.276
chr1:29532545:G:A	rs7547083	883945	eQTL	3.06e-02	-0.0778	0.0359	0.0	0.271
chr1:29532571:C:T	rs7525361	883971	eQTL	3.14e-02	-0.0771	0.0358	0.0	0.276
chr1:29532698:A:C	rs7537024	884098	eQTL	3.08e-02	-0.0763	0.0353	0.0	0.284
chr1:29533252:G:C	rs6426342	884652	eQTL	2.37e-02	-0.0805	0.0355	0.0	0.279
chr1:29533578:C:G	rs4384194	884978	eQTL	3.14e-02	-0.0771	0.0358	0.0	0.276
chr1:29534102:C:T	rs61783812	885502	eQTL	2.62e-02	-0.0798	0.0358	0.0	0.275
chr1:29535530:T:G	rs10915173	886930	eQTL	2.96e-02	-0.0769	0.0353	0.0	0.28
chr1:29535626:TAC:T	\N	887026	eQTL	3.73e-02	-0.0735	0.0352	0.0	0.285
chr1:29535816:C:T	rs61783813	887216	eQTL	3.00e-02	-0.0764	0.0352	0.0	0.284
chr1:29535919:T:C	rs6696398	887319	eQTL	3.00e-02	-0.0764	0.0352	0.0	0.284
chr1:29536215:G:A	rs6656524	887615	eQTL	3.00e-02	-0.0764	0.0352	0.0	0.284
chr1:29536235:C:T	rs6681805	887635	eQTL	3.00e-02	-0.0764	0.0352	0.0	0.284
chr1:29536294:G:A	rs61783814	887694	eQTL	2.91e-02	-0.0772	0.0353	0.0	0.28
chr1:29536893:G:A	rs7515046	888293	eQTL	3.23e-02	-0.0751	0.035	0.0	0.284
chr1:29537506:T:C	rs10915174	888906	eQTL	3.31e-02	-0.0747	0.035	0.0	0.284
chr1:29537662:C:T	\N	889062	eQTL	3.31e-02	-0.0747	0.035	0.0	0.284
chr1:29538103:T:C	rs4537516	889503	eQTL	3.31e-02	-0.0747	0.035	0.0	0.284
chr1:29538121:C:T	rs4381153	889521	eQTL	3.31e-02	-0.0747	0.035	0.0	0.284
chr1:29538179:G:A	rs10915177	889579	eQTL	3.23e-02	-0.0754	0.0352	0.0	0.28
chr1:29538474:C:T	rs61783816	889874	eQTL	3.13e-02	-0.0759	0.0352	0.0	0.28
chr1:29538595:C:T	rs6426343	889995	eQTL	3.27e-02	-0.0746	0.0349	0.0	0.284
chr1:29539009:G:GCTCCGT	rs11281337	890409	eQTL	3.38e-02	-0.0745	0.0351	0.0	0.284
chr1:29539935:A:G	rs12079158	891335	eQTL	2.10e-02	-0.082	0.0354	0.0	0.277
chr1:29540049:C:T	rs59834118	891449	eQTL	2.41e-02	-0.0801	0.0354	0.0	0.276
chr1:29540200:A:G	rs12080284	891600	eQTL	2.31e-02	-0.0804	0.0353	0.0	0.28
chr1:29541142:C:T	rs10915179	892542	eQTL	1.46e-02	0.0879	0.0359	0.00103	0.27
chr1:29541523:G:A	\N	892923	eQTL	3.51e-03	0.489	0.167	0.00325	0.00932
chr1:29543403:G:A	rs6605085	894803	eQTL	2.00e-03	-0.106	0.0342	0.00517	0.312
chr1:29543550:G:T	rs6605086	894950	eQTL	1.07e-03	-0.111	0.0339	0.0103	0.319
chr1:29543868:C:T	rs7552197	895268	eQTL	1.08e-03	-0.111	0.0339	0.0101	0.319
chr1:29544074:G:C	rs117410100	895474	eQTL	3.50e-02	-0.194	0.0919	0.0	0.0324
chr1:29544585:T:C	rs4132920	895985	eQTL	1.04e-02	0.0923	0.0359	0.00131	0.272
chr1:29547427:G:A	rs144190459	898827	eQTL	3.01e-02	-0.238	0.11	0.0	0.0221
chr1:27748055:AAAT:A	\N	-900545	eQTL	2.18e-02	-0.636	0.277	0.0	0.00343
chr1:29558402:A:G	\N	909802	eQTL	3.75e-02	0.0914	0.0439	0.0	0.159
chr1:29558916:C:T	\N	910316	eQTL	4.09e-03	0.774	0.269	0.00291	0.00343
chr1:29559706:G:C	\N	911106	eQTL	1.74e-02	0.104	0.0439	0.0	0.159
chr1:29560860:A:C	\N	912260	eQTL	4.22e-02	0.089	0.0438	0.0	0.157
chr1:29560956:AC:A	\N	912356	eQTL	3.32e-02	0.38	0.178	0.0	0.00834
chr1:29563593:C:T	\N	914993	eQTL	3.32e-02	0.38	0.178	0.0	0.00834
chr1:29570330:A:G	\N	921730	eQTL	4.72e-02	0.712	0.358	0.0	0.00196
chr1:29574334:A:G	\N	925734	eQTL	4.04e-02	-0.809	0.394	0.0	0.00147
chr1:27720720:G:T	\N	-927880	eQTL	4.05e-03	-0.439	0.152	0.00293	0.0128
chr1:29578191:C:G	\N	929591	eQTL	2.93e-02	0.101	0.0462	0.0	0.134
chr1:29579038:A:G	\N	930438	eQTL	3.31e-02	0.0983	0.0461	0.0	0.134
chr1:29580854:C:T	\N	932254	eQTL	4.68e-02	0.0927	0.0466	0.0	0.128
chr1:29581609:G:A	\N	933009	eQTL	4.68e-02	0.0927	0.0466	0.0	0.128
chr1:29581945:A:G	\N	933345	eQTL	4.72e-02	0.0926	0.0466	0.0	0.128
chr1:29583028:A:G	\N	934428	eQTL	4.48e-02	0.0942	0.0469	0.0	0.128
chr1:29585301:G:C	\N	936701	eQTL	4.04e-02	0.0956	0.0466	0.0	0.13
chr1:27711309:G:A	\N	-937291	eQTL	1.95e-02	0.945	0.404	0.0	0.00147
chr1:29585921:C:A	\N	937321	eQTL	4.31e-02	0.0943	0.0465	0.0	0.131
chr1:29586448:A:G	\N	937848	eQTL	4.30e-02	0.0943	0.0465	0.0	0.131
chr1:27709635:T:G	\N	-938965	eQTL	1.95e-02	0.945	0.404	0.0	0.00147
chr1:29590126:G:A	\N	941526	eQTL	4.61e-02	0.0929	0.0465	0.0	0.131
chr1:29591142:A:G	\N	942542	eQTL	4.30e-02	0.0943	0.0465	0.0	0.131
chr1:29591840:C:T	\N	943240	eQTL	4.31e-02	0.0943	0.0465	0.0	0.131
chr1:29593267:T:G	rs7542036	944667	eQTL	4.42e-02	0.0643	0.0319	0.0	0.418
chr1:29593957:G:A	\N	945357	eQTL	4.29e-02	0.0943	0.0465	0.0	0.131
chr1:29594170:A:C	\N	945570	eQTL	4.18e-02	0.0953	0.0468	0.0	0.131
chr1:29595453:T:C	\N	946853	eQTL	1.24e-02	-0.424	0.169	0.00121	0.00834
chr1:29599921:C:T	\N	951321	eQTL	4.33e-02	0.705	0.349	0.0	0.00196
chr1:27696644:A:G	\N	-951956	eQTL	1.95e-02	0.945	0.404	0.0	0.00147
chr1:29603870:C:T	\N	955270	eQTL	4.13e-02	-0.507	0.248	0.0	0.00393
chr1:27671912:T:G	\N	-976688	eQTL	1.94e-02	1.12	0.477	0.0	0.00147
chr1:29633383:C:G	rs9286950	984783	eQTL	1.55e-02	0.0835	0.0344	0.0	0.298
chr1:29633591:C:T	rs61760674	984991	eQTL	1.62e-02	0.0829	0.0344	0.0	0.299
chr1:29639011:C:T	\N	990411	eQTL	3.40e-02	0.076	0.0358	0.0	0.26
chr1:29640589:A:G	rs9439756	991989	eQTL	1.20e-02	0.0888	0.0353	0.00121	0.273
chr1:29640942:T:C	rs9439755	992342	eQTL	9.36e-03	0.0907	0.0348	0.00149	0.278
chr1:29640996:T:G	rs9286954	992396	eQTL	8.84e-03	0.0914	0.0348	0.00157	0.278
chr1:29641001:C:T	rs9439754	992401	eQTL	8.85e-03	0.0914	0.0348	0.00157	0.278
chr1:29641317:T:G	rs9439752	992717	eQTL	9.48e-03	0.0906	0.0348	0.00148	0.278
chr1:29641530:G:GT	rs11463477	992930	eQTL	3.20e-02	0.0712	0.0331	0.0	0.312
chr1:29641922:AG:A	\N	993322	eQTL	2.00e-02	0.0812	0.0348	0.0	0.284
chr1:29642391:G:C	rs271330	993791	eQTL	2.25e-02	0.0796	0.0348	0.0	0.284
chr1:29644670:A:G	rs692787	996070	eQTL	4.15e-02	0.0684	0.0335	0.0	0.304
chr1:29645729:G:A	\N	997129	eQTL	4.38e-02	0.0678	0.0336	0.0	0.304
chr1:29646158:T:C	rs271385	997558	eQTL	4.20e-02	0.0683	0.0335	0.0	0.304
chr1:29647440:A:C	\N	998840	eQTL	3.73e-02	0.0705	0.0338	0.0	0.304
chr1:29648100:G:A	\N	999500	eQTL	3.16e-02	0.0751	0.0349	0.0	0.283
chr1:29648362:G:A	\N	999762	eQTL	3.23e-02	0.0747	0.0348	0.0	0.283

Expression Fold Change in Massively Parallel Reporter Assay (MPRA)

[Click here to download the full results]

mpra plot

Variant ID	rs ID	TSS Distance	P-Value	Expression Fold Change	Tier	Cell Type
chr1:29157389:C:T	rs151253986	508789	0.00357	-0.704	Tier 2	K562
chr1:29157389:C:T	rs151253986	508789	0.086	0.531	None	HepG2