JOB

RPS4XP1(ENSG00000214203)

View on Pheweb.jp , UCSC , GWAS Catalog , GTEx , gnomAD

Statistical fine-mapping results from Japan COVID-19 Task Force

(Shown only for PIP>0.001)

qtl plot

Variant ID	rs ID	TSS Distance	Category	P-value	Effect Size	Effect Size (se)	PIP (FINEMAP)	MAF
chr12:100012763:C:A	\N	2925	eQTL	3.20e-02	1.15	0.534	0.0	0.00147
chr12:100015030:T:C	\N	5192	eQTL	3.85e-02	-0.555	0.268	0.0	0.00491
chr12:99990771:C:T	\N	-19067	eQTL	6.55e-03	-1.26	0.463	0.00137	0.00147
chr12:100036610:T:C	\N	26772	eQTL	2.49e-02	-0.864	0.385	0.0	0.00245
chr12:100038562:G:A	\N	28724	eQTL	2.09e-02	-1.16	0.501	0.0	0.00147
chr12:99978017:T:C	\N	-31821	eQTL	4.73e-02	0.616	0.31	0.0	0.00343
chr12:100043001:G:A	\N	33163	eQTL	2.53e-02	0.648	0.289	0.0	0.00393
chr12:100046930:A:G	\N	37092	eQTL	2.53e-02	0.646	0.289	0.0	0.00393
chr12:99960413:C:T	\N	-49425	eQTL	1.05e-02	-0.801	0.312	0.0	0.00343
chr12:100077972:C:A	rs7974719	68134	eQTL	2.50e-02	-0.37	0.165	0.0	0.0123
chr12:100078841:G:A	rs75346681	69003	eQTL	2.51e-02	-0.37	0.165	0.0	0.0123
chr12:100084893:T:C	\N	75055	eQTL	4.88e-02	0.612	0.31	0.0	0.00343
chr12:99929950:C:A	\N	-79888	eQTL	3.73e-02	-0.621	0.298	0.0	0.00393
chr12:100094838:C:T	\N	85000	eQTL	9.63e-03	1.3	0.501	0.00104	0.00147
chr12:99922040:G:A	\N	-87798	eQTL	6.57e-03	-1.26	0.463	0.00137	0.00147
chr12:100102473:G:A	\N	92635	eQTL	2.43e-02	1.05	0.467	0.0	0.00147
chr12:99916006:T:C	\N	-93832	eQTL	4.66e-02	-1.01	0.508	0.0	0.00147
chr12:99914181:T:C	rs118172092	-95657	eQTL	3.34e-03	0.333	0.113	0.00239	0.024
chr12:99908360:G:A	\N	-101478	eQTL	6.57e-03	-1.26	0.463	0.00137	0.00147
chr12:99907927:T:G	\N	-101911	eQTL	4.65e-02	-1.01	0.509	0.0	0.00147
chr12:100112935:C:T	rs79077415	103097	eQTL	2.47e-02	0.151	0.0671	0.0	0.0854
chr12:99899414:G:A	\N	-110424	eQTL	6.71e-03	1.06	0.389	0.00135	0.00245
chr12:100142917:G:T	\N	133079	eQTL	4.86e-02	0.946	0.479	0.0	0.00147
chr12:100149778:G:A	\N	139940	eQTL	4.82e-02	0.611	0.309	0.0	0.00343
chr12:100170400:G:A	\N	160562	eQTL	3.49e-03	1.25	0.427	0.00233	0.00245
chr12:100170956:G:A	\N	161118	eQTL	2.22e-02	-1.06	0.461	0.0	0.00147
chr12:99848475:C:G	\N	-161363	eQTL	1.39e-02	1.2	0.486	0.0	0.00147
chr12:99839500:G:A	\N	-170338	eQTL	2.04e-02	0.943	0.406	0.0	0.00196
chr12:100207599:A:G	\N	197761	eQTL	2.21e-02	-0.768	0.335	0.0	0.00393
chr12:100211122:G:A	\N	201284	eQTL	3.47e-02	0.607	0.287	0.0	0.00491
chr12:99795524:G:T	\N	-214314	eQTL	2.72e-02	1.11	0.5	0.0	0.00147
chr12:100234171:T:C	rs142582239	224333	eQTL	8.61e-03	-0.379	0.144	0.00109	0.0182
chr12:99775827:G:A	\N	-234011	eQTL	4.44e-02	-0.962	0.478	0.0	0.00196
chr12:100251629:G:A	\N	241791	eQTL	2.72e-02	0.601	0.272	0.0	0.00442
chr12:99749293:C:T	\N	-260545	eQTL	1.34e-02	-0.886	0.358	0.0	0.00245
chr12:99747983:C:CT	\N	-261855	eQTL	7.63e-03	0.335	0.125	0.00117	0.0221
chr12:100281630:G:A	\N	271792	eQTL	2.42e-02	0.56	0.248	0.0	0.0054
chr12:100283824:T:C	\N	273986	eQTL	3.28e-02	-0.665	0.311	0.0	0.00393
chr12:100296534:A:G	\N	286696	eQTL	2.34e-02	0.755	0.332	0.0	0.00294
chr12:99718951:C:T	\N	-290887	eQTL	1.74e-02	-1.02	0.428	0.0	0.00245
chr12:99718382:T:C	rs186804170	-291456	eQTL	4.86e-02	-0.182	0.092	0.0	0.0397
chr12:99716070:G:A	\N	-293768	eQTL	1.59e-02	-0.378	0.157	0.0	0.0142
chr12:100307660:A:G	\N	297822	eQTL	2.34e-02	0.755	0.332	0.0	0.00294
chr12:100308061:A:G	\N	298223	eQTL	2.73e-02	-0.892	0.404	0.0	0.00196
chr12:99702733:C:CAGAGTTTCCCTATGTTGCCTAGAGGT	rs559151282	-307105	eQTL	1.26e-02	0.296	0.118	0.0	0.024
chr12:100317675:A:C	\N	307837	eQTL	2.55e-02	0.473	0.211	0.0	0.00785
chr12:100326263:A:G	\N	316425	eQTL	2.55e-02	0.473	0.211	0.0	0.00785
chr12:99692402:G:A	\N	-317436	eQTL	1.24e-02	-0.981	0.391	0.0	0.00196
chr12:99666513:TTAAATTTGTAGGGG:T	\N	-343325	eQTL	7.15e-03	0.659	0.245	0.00128	0.00589
chr12:100357059:A:G	\N	347221	eQTL	4.82e-02	-0.808	0.409	0.0	0.00196
chr12:100360097:G:C	\N	350259	eQTL	3.78e-02	0.579	0.278	0.0	0.00491
chr12:100368737:T:C	rs557581771	358899	eQTL	1.82e-03	-0.477	0.153	0.00438	0.0137
chr12:100378123:A:G	rs12426650	368285	eQTL	3.05e-02	0.158	0.0731	0.0	0.0736
chr12:100383986:A:G	\N	374148	eQTL	1.09e-02	0.959	0.376	0.0	0.00245
chr12:100388868:C:T	\N	379030	eQTL	1.05e-02	-1.95	0.761	0.0	0.00147
chr12:100389233:G:A	\N	379395	eQTL	1.39e-02	0.209	0.085	0.0	0.0447
chr12:100405860:C:T	rs77892340	396022	eQTL	1.57e-02	-0.341	0.141	0.0	0.0177
chr12:100410522:G:A	rs150321968	400684	eQTL	5.88e-03	-0.399	0.145	0.00148	0.0157
chr12:99602341:G:A	\N	-407497	eQTL	1.16e-02	0.58	0.229	0.0	0.00687
chr12:99595969:G:A	\N	-413869	eQTL	1.41e-02	1.2	0.489	0.0	0.00147
chr12:99591867:C:A	\N	-417971	eQTL	1.41e-02	1.2	0.489	0.0	0.00147
chr12:99573834:G:C	\N	-436004	eQTL	7.28e-03	-0.755	0.281	0.00127	0.00442
chr12:99555533:G:A	\N	-454305	eQTL	6.75e-03	0.756	0.279	0.00128	0.00442
chr12:100464234:C:T	\N	454396	eQTL	4.53e-02	0.246	0.123	0.0	0.0231
chr12:100469432:G:A	rs117876355	459594	eQTL	1.35e-02	0.658	0.266	0.0	0.00491
chr12:99543830:A:G	\N	-466008	eQTL	6.91e-03	0.756	0.279	0.00132	0.00442
chr12:99517701:C:T	\N	-492137	eQTL	1.39e-02	1.21	0.491	0.0	0.00147
chr12:99512675:G:A	\N	-497163	eQTL	3.21e-02	-0.554	0.258	0.0	0.00491
chr12:100512012:C:T	\N	502174	eQTL	3.31e-02	0.616	0.288	0.0	0.00491
chr12:100518057:CT:C	rs531598654	508219	eQTL	1.12e-02	0.651	0.256	0.0	0.00491
chr12:100524062:CATAAACATATAGGTGATG:C	\N	514224	eQTL	3.31e-02	-0.835	0.391	0.0	0.00245
chr12:99493990:C:T	rs10860446	-515848	eQTL	4.69e-02	0.0732	0.0368	0.0	0.428
chr12:99488165:G:A	rs904883	-521673	eQTL	4.65e-02	0.074	0.0371	0.0	0.425
chr12:99484146:T:G	\N	-525692	eQTL	3.32e-02	-0.551	0.258	0.0	0.00491
chr12:100536816:C:A	\N	526978	eQTL	1.04e-02	0.952	0.371	0.0	0.00245
chr12:100540479:G:A	\N	530641	eQTL	1.28e-02	1.23	0.494	0.0	0.00147
chr12:99472567:T:C	\N	-537271	eQTL	1.37e-02	-0.893	0.362	0.0	0.00245
chr12:100553005:T:C	\N	543167	eQTL	1.08e-02	-1.13	0.444	0.0	0.00196
chr12:100554336:T:C	\N	544498	eQTL	4.79e-02	0.538	0.272	0.0	0.0054
chr12:99462686:T:C	\N	-547152	eQTL	4.33e-02	-0.852	0.421	0.0	0.00196
chr12:99452690:A:T	rs7309052	-557148	eQTL	3.03e-02	0.0808	0.0372	0.0	0.421
chr12:99451757:T:A	rs10777991	-558081	eQTL	4.16e-02	0.076	0.0373	0.0	0.42
chr12:100579393:C:T	rs145940429	569555	eQTL	1.39e-03	-0.311	0.0969	0.00596	0.0368
chr12:100620790:G:C	\N	610952	eQTL	1.01e-02	0.957	0.371	0.00101	0.00245
chr12:100636127:CT:C	\N	626289	eQTL	1.01e-02	0.956	0.371	0.0	0.00245
chr12:100643320:T:C	rs141996071	633482	eQTL	3.08e-03	-0.278	0.0938	0.0026	0.0402
chr12:99375415:G:A	\N	-634423	eQTL	3.68e-02	0.856	0.41	0.0	0.00245
chr12:100664584:G:A	\N	654746	eQTL	1.01e-02	0.956	0.371	0.001	0.00245
chr12:100664662:G:A	\N	654824	eQTL	7.35e-03	0.741	0.276	0.00121	0.00442
chr12:100667179:T:TTTAG	\N	657341	eQTL	8.68e-03	-0.272	0.103	0.00108	0.0353
chr12:99352167:A:G	rs148006975	-657671	eQTL	4.77e-02	-0.257	0.13	0.0	0.0245
chr12:100679536:T:C	\N	669698	eQTL	2.39e-02	0.901	0.398	0.0	0.00245
chr12:100703959:T:C	\N	694121	eQTL	4.62e-02	-0.573	0.287	0.0	0.00442
chr12:99315692:T:G	\N	-694146	eQTL	2.45e-02	0.971	0.431	0.0	0.00196
chr12:100704799:C:CA	\N	694961	eQTL	1.66e-02	-0.0893	0.0372	0.0	0.367
chr12:100705611:G:A	\N	695773	eQTL	5.87e-03	1.28	0.463	0.0015	0.00147
chr12:100707102:T:A	rs146223092	697264	eQTL	1.04e-02	-0.299	0.116	0.0	0.026
chr12:99306262:T:A	\N	-703576	eQTL	6.22e-03	1.13	0.411	0.00143	0.00196
chr12:100714106:A:G	\N	704268	eQTL	1.54e-02	1.08	0.447	0.0	0.00147
chr12:99286257:T:C	\N	-723581	eQTL	5.46e-03	0.692	0.249	0.00158	0.00589
chr12:99265458:G:A	\N	-744380	eQTL	1.73e-03	0.847	0.27	0.00469	0.0054
chr12:100768511:C:T	\N	758673	eQTL	2.85e-02	0.898	0.409	0.0	0.00196
chr12:99249377:C:G	\N	-760461	eQTL	4.34e-02	-0.868	0.429	0.0	0.00196
chr12:99238812:C:T	\N	-771026	eQTL	7.78e-03	0.678	0.254	0.00121	0.0054
chr12:99235553:G:A	\N	-774285	eQTL	1.68e-03	0.771	0.245	0.00494	0.00589
chr12:100798490:G:C	rs140848155	788652	eQTL	4.48e-02	0.28	0.139	0.0	0.0172
chr12:100802772:T:C	\N	792934	eQTL	3.22e-02	-0.206	0.096	0.0	0.0373
chr12:100806733:C:T	\N	796895	eQTL	3.06e-02	-0.208	0.0959	0.0	0.0373
chr12:100820605:C:G	\N	810767	eQTL	2.84e-02	1.08	0.494	0.0	0.00147
chr12:99194240:C:G	\N	-815598	eQTL	4.39e-02	-0.862	0.427	0.0	0.00196
chr12:100834608:A:C	rs117248779	824770	eQTL	2.00e-02	0.324	0.139	0.0	0.0172
chr12:100852896:C:T	rs118111927	843058	eQTL	4.91e-02	0.357	0.181	0.0	0.0103
chr12:100855108:C:T	rs7973397	845270	eQTL	4.00e-02	0.0792	0.0385	0.0	0.368
chr12:100856097:A:G	rs2056075	846259	eQTL	2.97e-02	0.0826	0.0379	0.0	0.342
chr12:100856482:C:A	rs10507120	846644	eQTL	2.74e-02	0.084	0.038	0.0	0.34
chr12:100858380:G:A	rs10778083	848542	eQTL	3.75e-02	0.0815	0.0391	0.0	0.342
chr12:100862271:A:G	rs7973237	852433	eQTL	2.95e-02	0.0826	0.0379	0.0	0.341
chr12:100863661:C:T	\N	853823	eQTL	3.73e-02	1.09	0.521	0.0	0.00147
chr12:100863743:T:C	rs1543125	853905	eQTL	2.91e-02	0.0828	0.0379	0.0	0.341
chr12:100864689:G:A	rs7295179	854851	eQTL	2.99e-02	0.0826	0.038	0.0	0.34
chr12:100865284:T:C	\N	855446	eQTL	2.92e-02	0.893	0.409	0.0	0.00196
chr12:100866680:A:G	rs938335	856842	eQTL	4.15e-02	0.0786	0.0385	0.0	0.368
chr12:100867066:C:T	rs7307162	857228	eQTL	2.93e-02	0.0829	0.038	0.0	0.339
chr12:100868079:C:T	rs10437889	858241	eQTL	3.20e-02	0.0838	0.039	0.0	0.346
chr12:100868389:G:A	rs10437891	858551	eQTL	2.92e-02	0.083	0.038	0.0	0.339
chr12:100868593:T:A	rs1514790	858755	eQTL	2.93e-02	0.0829	0.038	0.0	0.339
chr12:100869098:C:T	rs4764764	859260	eQTL	2.93e-02	0.0826	0.0379	0.0	0.34
chr12:100869483:A:G	rs7316136	859645	eQTL	3.16e-02	0.0815	0.0379	0.0	0.34
chr12:100870462:T:G	rs821867	860624	eQTL	3.39e-02	0.0828	0.039	0.0	0.345
chr12:100872152:A:G	rs821866	862314	eQTL	2.71e-02	0.0839	0.0379	0.0	0.342
chr12:100873545:G:A	rs821864	863707	eQTL	2.62e-02	-0.0843	0.0378	0.0	0.342
chr12:100876632:C:T	\N	866794	eQTL	2.62e-02	-0.0843	0.0378	0.0	0.342
chr12:100876648:T:A	rs821854	866810	eQTL	2.68e-02	-0.084	0.0379	0.0	0.342
chr12:100877278:A:C	\N	867440	eQTL	2.62e-02	-0.0843	0.0378	0.0	0.342
chr12:100882840:T:C	rs1828890	873002	eQTL	2.59e-02	-0.0845	0.0379	0.0	0.342
chr12:100898140:T:G	\N	888302	eQTL	2.80e-02	0.456	0.207	0.0	0.00834
chr12:100927302:T:C	\N	917464	eQTL	3.00e-02	0.37	0.17	0.0	0.0118
chr12:99084585:G:T	\N	-925253	eQTL	2.42e-03	0.769	0.253	0.00323	0.0054
chr12:100947084:C:T	rs117650181	937246	eQTL	1.36e-02	-0.242	0.0977	0.0	0.0368
chr12:99071481:C:T	\N	-938357	eQTL	4.01e-02	-0.921	0.448	0.0	0.00147
chr12:100951484:C:T	\N	941646	eQTL	1.27e-02	0.686	0.275	0.0	0.00491
chr12:100959293:C:T	\N	949455	eQTL	4.41e-02	-0.746	0.37	0.0	0.00245
chr12:100965829:T:A	rs117939367	955991	eQTL	4.37e-02	0.35	0.173	0.0	0.0113
chr12:99044094:A:G	\N	-965744	eQTL	4.93e-02	1.06	0.538	0.0	0.00147
chr12:99037255:G:A	\N	-972583	eQTL	3.62e-02	-0.267	0.127	0.0	0.0216
chr12:100983986:G:A	\N	974148	eQTL	3.70e-02	-0.319	0.153	0.0	0.0132
chr12:99029588:A:C	\N	-980250	eQTL	3.35e-02	0.992	0.466	0.0	0.00147
chr12:100995282:A:G	\N	985444	eQTL	2.54e-02	-1.11	0.498	0.0	0.00147
chr12:100996700:CA:C	\N	986862	eQTL	2.61e-02	-1.04	0.469	0.0	0.00147
chr12:99022755:T:C	\N	-987083	eQTL	1.08e-02	0.798	0.313	0.0	0.00393
chr12:100997882:CT:C	\N	988044	eQTL	1.19e-02	0.834	0.331	0.0	0.00294
chr12:101003039:T:A	\N	993201	eQTL	3.64e-02	1.0	0.479	0.0	0.00147
chr12:99015698:C:G	\N	-994140	eQTL	3.92e-02	0.443	0.215	0.0	0.00687
chr12:99015696:C:A	\N	-994142	eQTL	3.92e-02	0.443	0.215	0.0	0.00687
chr12:99015694:GT:G	\N	-994144	eQTL	3.92e-02	0.443	0.215	0.0	0.00687
chr12:99015692:C:CA	\N	-994146	eQTL	3.92e-02	0.443	0.215	0.0	0.00687
chr12:99015690:C:T	\N	-994148	eQTL	3.92e-02	0.443	0.215	0.0	0.00687
chr12:99015686:G:GTATTA	\N	-994152	eQTL	3.92e-02	0.443	0.215	0.0	0.00687

Expression Fold Change in Massively Parallel Reporter Assay (MPRA)

[Click here to download the full results]

mpra plot

Variant ID	rs ID	TSS Distance	P-Value	Expression Fold Change	Tier	Cell Type