JOB

ATP2A2(ENSG00000174437)

View on Pheweb.jp , UCSC , GWAS Catalog , GTEx , gnomAD

Statistical fine-mapping results from Japan COVID-19 Task Force

(Shown only for PIP>0.001)

qtl plot

Variant ID	rs ID	TSS Distance	Category	P-value	Effect Size	Effect Size (se)	PIP (FINEMAP)	MAF
chr12:110282337:A:G	\N	1581	eQTL	3.41e-02	0.249	0.117	0.0	0.00147
chr12:110286293:A:G	\N	5537	eQTL	2.47e-03	-0.315	0.104	0.0035	0.00196
chr12:110274645:G:A	\N	-6111	eQTL	3.41e-02	0.249	0.117	0.0	0.00147
chr12:110289012:A:G	\N	8256	eQTL	1.91e-02	0.112	0.0476	0.0	0.00883
chr12:110300008:A:G	rs192810166	19252	eQTL	2.69e-02	0.0391	0.0176	0.0	0.077
chr12:110258252:G:A	\N	-22504	eQTL	3.41e-02	0.249	0.117	0.0	0.00147
chr12:110324419:A:T	\N	43663	eQTL	3.41e-02	0.249	0.117	0.0	0.00147
chr12:110324470:A:G	\N	43714	eQTL	4.40e-02	0.195	0.0965	0.0	0.00294
chr12:110335639:A:C	\N	54883	eQTL	4.90e-02	0.135	0.0687	0.0	0.00442
chr12:110224758:C:T	\N	-55998	eQTL	2.40e-03	-0.316	0.104	0.00359	0.00196
chr12:110371593:C:T	\N	90837	eQTL	2.91e-02	-0.21	0.0962	0.0	0.00294
chr12:110189628:C:T	\N	-91128	eQTL	4.28e-02	0.178	0.088	0.0	0.00245
chr12:110185273:C:T	\N	-95483	eQTL	5.26e-03	-0.275	0.0984	0.00186	0.00245
chr12:110393736:G:A	\N	112980	eQTL	4.72e-02	0.104	0.0523	0.0	0.00834
chr12:110156950:T:A	rs79938910	-123806	eQTL	2.09e-02	0.054	0.0233	0.0	0.0422
chr12:110414223:C:G	\N	133467	eQTL	2.06e-02	0.109	0.0472	0.0	0.0103
chr12:110419959:T:A	\N	139203	eQTL	2.70e-02	-0.185	0.0835	0.0	0.00294
chr12:110426080:A:G	\N	145324	eQTL	3.66e-02	0.0409	0.0195	0.0	0.0599
chr12:110134381:ATTTG:A	\N	-146375	eQTL	3.20e-02	0.254	0.118	0.0	0.00147
chr12:110116021:GCTGC:G	rs138419568	-164735	eQTL	1.81e-02	0.0727	0.0307	0.0	0.0216
chr12:110108813:C:T	\N	-171943	eQTL	2.07e-02	-0.173	0.0747	0.0	0.00393
chr12:110107734:A:C	rs141747038	-173022	eQTL	8.07e-03	-0.0342	0.0129	0.00131	0.162
chr12:110104379:C:T	\N	-176377	eQTL	4.81e-03	-0.279	0.0988	0.00201	0.00245
chr12:110461584:A:T	\N	180828	eQTL	3.52e-02	-0.247	0.117	0.0	0.00147
chr12:110472500:G:A	\N	191744	eQTL	2.90e-03	-0.31	0.104	0.00306	0.00196
chr12:110496809:G:C	\N	216053	eQTL	3.30e-02	0.25	0.117	0.0	0.00147
chr12:110499279:G:A	\N	218523	eQTL	3.98e-02	-0.206	0.1	0.0	0.00196
chr12:110501752:C:A	\N	220996	eQTL	3.29e-02	0.25	0.117	0.0	0.00147
chr12:110040107:G:C	\N	-240649	eQTL	2.18e-03	-0.318	0.104	0.00392	0.00196
chr12:110526958:C:G	\N	246202	eQTL	4.98e-02	0.102	0.0518	0.0	0.00834
chr12:110552455:T:C	\N	271699	eQTL	4.52e-02	0.244	0.122	0.0	0.00147
chr12:110008621:G:A	rs7977696	-272135	eQTL	2.46e-02	-0.0303	0.0134	0.0	0.14
chr12:110002668:G:T	\N	-278088	eQTL	1.95e-03	-0.322	0.104	0.00432	0.00196
chr12:110565343:G:A	rs75654152	284587	eQTL	4.60e-02	0.0245	0.0123	0.0	0.173
chr12:110566604:T:C	rs78387306	285848	eQTL	4.93e-02	0.037	0.0188	0.0	0.0633
chr12:110567237:A:G	\N	286481	eQTL	1.01e-02	-0.245	0.095	0.00111	0.00245
chr12:110586199:G:A	\N	305443	eQTL	4.17e-05	0.494	0.12	0.0965	0.00196
chr12:109964253:C:G	\N	-316503	eQTL	1.90e-03	-0.323	0.104	0.00443	0.00196
chr12:110607883:A:C	\N	327127	eQTL	4.58e-02	0.103	0.0515	0.0	0.00834
chr12:109944294:GC:G	\N	-336462	eQTL	4.71e-02	0.234	0.118	0.0	0.00147
chr12:109936518:T:C	\N	-344238	eQTL	2.19e-02	-0.169	0.0737	0.0	0.00393
chr12:109912740:G:A	\N	-368016	eQTL	1.82e-02	-0.174	0.0734	0.0	0.00393
chr12:110651168:G:C	\N	370412	eQTL	3.51e-02	-0.246	0.117	0.0	0.00147
chr12:109908808:A:G	rs151324095	-371948	eQTL	2.03e-02	0.0815	0.0351	0.0	0.0157
chr12:109906696:G:A	\N	-374060	eQTL	4.63e-02	0.234	0.117	0.0	0.00147
chr12:110655198:T:C	\N	374442	eQTL	1.01e-02	-0.245	0.095	0.00111	0.00245
chr12:110657551:G:A	\N	376795	eQTL	1.79e-02	-0.181	0.0764	0.0	0.00393
chr12:110658951:G:A	\N	378195	eQTL	4.21e-02	-0.2	0.0982	0.0	0.00245
chr12:110665076:C:A	rs79433027	384320	eQTL	3.71e-02	0.0611	0.0293	0.0	0.024
chr12:110667296:G:A	\N	386540	eQTL	3.39e-03	-0.36	0.123	0.00267	0.00147
chr12:110669439:C:A	\N	388683	eQTL	3.28e-03	-0.305	0.104	0.00276	0.00196
chr12:109889876:C:T	\N	-390880	eQTL	3.14e-02	0.254	0.118	0.0	0.00147
chr12:110679667:C:A	\N	398911	eQTL	4.45e-02	0.109	0.054	0.0	0.00785
chr12:109869998:C:A	\N	-410758	eQTL	1.81e-05	0.571	0.133	0.187	0.00147
chr12:110692761:A:G	\N	412005	eQTL	4.93e-02	0.178	0.0903	0.0	0.00245
chr12:110697129:TC:T	\N	416373	eQTL	4.46e-02	0.109	0.054	0.0	0.00785
chr12:109862083:G:A	rs79923736	-418673	eQTL	2.16e-02	-0.0687	0.0299	0.0	0.024
chr12:109861695:C:T	\N	-419061	eQTL	2.76e-02	0.107	0.0483	0.0	0.00932
chr12:109847483:G:A	\N	-433273	eQTL	3.64e-02	0.16	0.0762	0.0	0.00393
chr12:109838819:G:T	rs57498833	-441937	eQTL	3.45e-02	0.0241	0.0114	0.0	0.211
chr12:109832644:C:A	rs76088085	-448112	eQTL	3.89e-02	-0.0399	0.0193	0.0	0.0584
chr12:109828223:C:T	\N	-452533	eQTL	4.51e-02	0.236	0.118	0.0	0.00147
chr12:109824819:C:G	\N	-455937	eQTL	3.75e-02	0.186	0.0893	0.0	0.00294
chr12:109817111:G:T	\N	-463645	eQTL	1.78e-03	-0.324	0.103	0.00471	0.00196
chr12:109816099:G:A	\N	-464657	eQTL	1.95e-02	-0.212	0.0905	0.0	0.00245
chr12:110757295:G:A	\N	476539	eQTL	4.49e-02	0.107	0.0532	0.0	0.00785
chr12:109788991:A:G	rs10774897	-491765	eQTL	4.69e-02	-0.0191	0.0096	0.0	0.366
chr12:109788118:C:G	rs7299388	-492638	eQTL	4.88e-02	-0.0189	0.00959	0.0	0.366
chr12:110773620:A:G	\N	492864	eQTL	2.19e-03	0.43	0.14	0.00409	0.00147
chr12:109787290:G:T	\N	-493466	eQTL	4.90e-03	-0.331	0.117	0.00199	0.00147
chr12:110774663:C:T	\N	493907	eQTL	3.77e-03	0.209	0.0719	0.00249	0.00442
chr12:109785928:G:A	rs34786626	-494828	eQTL	3.02e-02	-0.0225	0.0104	0.0	0.272
chr12:109782827:C:T	\N	-497929	eQTL	1.83e-03	-0.323	0.103	0.0046	0.00196
chr12:110783281:C:T	\N	502525	eQTL	2.88e-02	0.256	0.117	0.0	0.00147
chr12:110786542:C:T	\N	505786	eQTL	3.01e-02	0.199	0.0918	0.0	0.00245
chr12:109771176:G:A	\N	-509580	eQTL	1.79e-02	0.28	0.118	0.0	0.00147
chr12:109770492:C:T	\N	-510264	eQTL	2.77e-03	-0.264	0.0881	0.00318	0.00294
chr12:109769316:C:T	\N	-511440	eQTL	2.14e-02	0.234	0.101	0.0	0.00196
chr12:109747589:T:C	\N	-533167	eQTL	4.11e-02	0.116	0.0565	0.0	0.00687
chr12:110821502:G:A	rs117569823	540746	eQTL	2.76e-02	0.0512	0.0232	0.0	0.0437
chr12:109737166:G:A	\N	-543590	eQTL	3.70e-04	-0.342	0.0956	0.0203	0.00245
chr12:109732648:C:T	rs189705219	-548108	eQTL	3.98e-02	-0.051	0.0248	0.0	0.0339
chr12:110841122:G:A	\N	560366	eQTL	5.53e-05	0.473	0.117	0.0772	0.00196
chr12:109720337:G:A	\N	-560419	eQTL	4.52e-02	0.128	0.0637	0.0	0.0054
chr12:109719215:A:G	\N	-561541	eQTL	1.82e-03	-0.323	0.103	0.00462	0.00196
chr12:109704293:G:A	\N	-576463	eQTL	1.81e-02	0.215	0.0906	0.0	0.00245
chr12:110858843:G:A	\N	578087	eQTL	9.65e-03	-0.246	0.0948	0.00115	0.00245
chr12:109697283:T:C	\N	-583473	eQTL	1.07e-03	-0.339	0.103	0.00757	0.00196
chr12:109693142:T:C	rs1465351	-587614	eQTL	3.09e-02	0.0403	0.0187	0.0	0.0638
chr12:110868534:G:A	\N	587778	eQTL	1.66e-02	0.191	0.0795	0.0	0.00343
chr12:109692065:T:C	\N	-588691	eQTL	3.90e-02	0.0387	0.0187	0.0	0.0638
chr12:109691279:G:A	rs10774845	-589477	eQTL	3.90e-02	0.0387	0.0187	0.0	0.0638
chr12:109691222:T:C	rs7138324	-589534	eQTL	3.89e-02	0.0387	0.0187	0.0	0.0638
chr12:109691147:C:T	rs7313777	-589609	eQTL	3.57e-02	0.0392	0.0186	0.0	0.0638
chr12:109690267:C:T	\N	-590489	eQTL	4.76e-02	-0.201	0.101	0.0	0.00245
chr12:110873733:TGGTACCCATACAGATGCTATCTGAGCACACTTCAGTTAGTGAACTGTAGAACG:T	\N	592977	eQTL	9.47e-03	0.248	0.0954	0.00122	0.00245
chr12:109685003:C:T	\N	-595753	eQTL	2.20e-03	-0.319	0.104	0.00388	0.00196
chr12:109683471:T:C	\N	-597285	eQTL	2.10e-02	0.117	0.0508	0.0	0.00883
chr12:109681868:G:A	\N	-598888	eQTL	8.07e-03	-0.312	0.118	0.00134	0.00147
chr12:110885201:A:G	\N	604445	eQTL	2.66e-02	0.206	0.0929	0.0	0.00245
chr12:109668861:C:T	\N	-611895	eQTL	1.29e-02	-0.192	0.0772	0.0	0.00343
chr12:109664909:C:T	\N	-615847	eQTL	4.45e-02	0.0963	0.0479	0.0	0.00883
chr12:110907803:C:G	rs2238150	627047	eQTL	4.38e-02	-0.0192	0.00953	0.0	0.313
chr12:110913205:C:A	\N	632449	eQTL	1.48e-02	0.2	0.0819	0.0	0.00343
chr12:109642465:C:T	\N	-638291	eQTL	2.75e-02	-0.0991	0.0449	0.0	0.0103
chr12:109639288:C:G	\N	-641468	eQTL	1.58e-02	0.247	0.102	0.0	0.00196
chr12:109637473:A:G	\N	-643283	eQTL	2.33e-02	-0.104	0.0456	0.0	0.0103
chr12:109637472:G:A	\N	-643284	eQTL	2.33e-02	-0.104	0.0456	0.0	0.0103
chr12:109636083:A:T	\N	-644673	eQTL	3.38e-02	0.217	0.102	0.0	0.00196
chr12:110932246:G:A	\N	651490	eQTL	3.77e-02	-0.149	0.0715	0.0	0.00393
chr12:109621694:A:G	\N	-659062	eQTL	2.39e-02	-0.099	0.0438	0.0	0.0108
chr12:109613070:A:G	rs75628519	-667686	eQTL	4.98e-02	0.0305	0.0155	0.0	0.0893
chr12:110956427:AT:A	\N	675671	eQTL	1.70e-02	0.2	0.0835	0.0	0.00343
chr12:109603091:C:T	\N	-677665	eQTL	1.44e-02	-0.204	0.0833	0.0	0.00294
chr12:110971791:C:T	\N	691035	eQTL	4.35e-02	0.186	0.0921	0.0	0.00245
chr12:109581746:G:T	\N	-699010	eQTL	3.40e-02	-0.198	0.0933	0.0	0.00245
chr12:110981099:C:T	\N	700343	eQTL	4.98e-02	0.181	0.0923	0.0	0.00245
chr12:109571210:A:G	\N	-709546	eQTL	1.57e-03	0.37	0.117	0.0054	0.00147
chr12:110996173:G:A	\N	715417	eQTL	2.09e-02	0.196	0.0847	0.0	0.00343
chr12:109542444:A:T	\N	-738312	eQTL	1.45e-02	-0.204	0.0833	0.0	0.00294
chr12:109540411:A:G	\N	-740345	eQTL	9.75e-03	-0.35	0.135	0.00117	0.00147
chr12:109539327:G:A	\N	-741429	eQTL	9.38e-03	0.234	0.0899	0.00127	0.00245
chr12:109538790:G:T	rs149779332	-741966	eQTL	2.80e-02	-0.1	0.0456	0.0	0.0103
chr12:111025876:C:T	rs189693960	745120	eQTL	3.94e-02	0.075	0.0363	0.0	0.0157
chr12:111027763:C:G	\N	747007	eQTL	4.35e-02	0.192	0.0948	0.0	0.00245
chr12:111041992:C:T	rs61943031	761236	eQTL	4.17e-02	0.0203	0.00997	0.0	0.295
chr12:111045721:C:T	\N	764965	eQTL	4.12e-02	0.224	0.11	0.0	0.00196
chr12:111046276:G:T	\N	765520	eQTL	4.52e-02	0.183	0.0912	0.0	0.00245
chr12:109498987:G:A	\N	-781769	eQTL	3.63e-02	0.241	0.115	0.0	0.00147
chr12:109495665:C:G	\N	-785091	eQTL	9.38e-03	0.234	0.0899	0.00127	0.00245
chr12:109479806:G:C	\N	-800950	eQTL	3.42e-02	-0.0807	0.038	0.0	0.0152
chr12:111086166:A:G	\N	805410	eQTL	3.31e-02	0.274	0.128	0.0	0.00147
chr12:109463172:G:A	\N	-817584	eQTL	2.20e-02	-0.219	0.0954	0.0	0.00245
chr12:109460125:C:T	\N	-820631	eQTL	1.57e-03	0.369	0.116	0.00536	0.00147
chr12:109445952:G:A	rs151259945	-834804	eQTL	3.43e-02	-0.0949	0.0448	0.0	0.0103
chr12:111120427:G:A	\N	839671	eQTL	4.84e-02	0.171	0.0863	0.0	0.00294
chr12:109439768:G:A	\N	-840988	eQTL	3.08e-02	-0.0918	0.0425	0.0	0.0123
chr12:109439585:G:A	\N	-841171	eQTL	4.19e-02	-0.243	0.12	0.0	0.00147
chr12:109431574:C:T	\N	-849182	eQTL	1.22e-02	0.21	0.0835	0.0	0.00294
chr12:109424877:G:A	\N	-855879	eQTL	1.45e-02	-0.204	0.0833	0.0	0.00294
chr12:109413585:C:T	\N	-867171	eQTL	1.80e-02	0.24	0.101	0.0	0.00196
chr12:109402336:A:AT	\N	-878420	eQTL	3.40e-02	-0.195	0.0918	0.0	0.00294
chr12:111164443:G:T	\N	883687	eQTL	3.22e-02	0.128	0.0596	0.0	0.00638
chr12:109391444:G:A	\N	-889312	eQTL	4.09e-02	0.21	0.102	0.0	0.00196
chr12:109390529:A:G	\N	-890227	eQTL	1.72e-02	0.243	0.102	0.0	0.00196
chr12:109378921:A:T	\N	-901835	eQTL	2.95e-02	0.0979	0.0449	0.0	0.0108
chr12:109365331:A:T	\N	-915425	eQTL	8.08e-03	-0.312	0.118	0.00134	0.00147
chr12:111201293:G:A	\N	920537	eQTL	1.80e-02	0.157	0.0661	0.0	0.0054
chr12:109347758:G:A	\N	-932998	eQTL	1.63e-03	0.367	0.116	0.0052	0.00147
chr12:109337692:G:A	\N	-943064	eQTL	1.63e-03	0.367	0.116	0.00516	0.00147
chr12:109334749:G:A	\N	-946007	eQTL	8.08e-03	-0.312	0.118	0.00134	0.00147
chr12:109317342:G:T	rs143449091	-963414	eQTL	1.76e-02	-0.0683	0.0287	0.0	0.0245
chr12:109315680:C:T	rs7968200	-965076	eQTL	2.45e-02	-0.0249	0.011	0.0	0.211
chr12:109312531:C:T	rs10850020	-968225	eQTL	2.45e-02	-0.0249	0.011	0.0	0.211
chr12:109311001:T:C	rs10850017	-969755	eQTL	2.92e-02	-0.0241	0.011	0.0	0.212
chr12:109307815:A:G	rs1036515	-972941	eQTL	2.50e-02	-0.0248	0.0111	0.0	0.211
chr12:109305382:G:GTTA	\N	-975374	eQTL	2.50e-02	-0.0248	0.0111	0.0	0.211
chr12:109302637:G:A	rs11066182	-978119	eQTL	2.55e-02	-0.0248	0.0111	0.0	0.211
chr12:109301816:G:A	\N	-978940	eQTL	4.64e-02	0.105	0.0526	0.0	0.00736
chr12:109298228:C:T	rs11066163	-982528	eQTL	2.89e-02	-0.0242	0.0111	0.0	0.212
chr12:109293979:A:G	rs12422904	-986777	eQTL	2.63e-02	-0.0247	0.0111	0.0	0.211
chr12:109293905:G:A	rs139529097	-986851	eQTL	2.22e-02	-0.0761	0.0332	0.0	0.0177
chr12:109293560:C:T	rs11066138	-987196	eQTL	2.63e-02	-0.0247	0.0111	0.0	0.211
chr12:111275690:A:T	\N	994934	eQTL	4.20e-02	0.243	0.119	0.0	0.00147
chr12:109283175:AT:A	\N	-997581	eQTL	1.93e-02	0.0255	0.0109	0.0	0.228

Expression Fold Change in Massively Parallel Reporter Assay (MPRA)

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mpra plot

Variant ID	rs ID	TSS Distance	P-Value	Expression Fold Change	Tier	Cell Type