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Genes within 1Mb (chr6:138585398:A:AT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A -188111 sc-eQTL 5.30e-01 -0.144 0.228 0.053 CD8_TCM L2
ENSG00000051620 HEBP2 181867 sc-eQTL 4.04e-01 -0.134 0.16 0.053 CD8_TCM L2
ENSG00000112378 PERP 477979 sc-eQTL 1.36e-01 -0.316 0.211 0.053 CD8_TCM L2
ENSG00000112406 HECA -549682 sc-eQTL 8.25e-01 -0.037 0.167 0.053 CD8_TCM L2
ENSG00000118503 TNFAIP3 718184 sc-eQTL 9.74e-01 0.00333 0.102 0.053 CD8_TCM L2
ENSG00000135597 REPS1 -402863 sc-eQTL 1.35e-01 0.259 0.173 0.053 CD8_TCM L2
ENSG00000146386 ABRACL -443347 sc-eQTL 6.00e-01 0.0909 0.173 0.053 CD8_TCM L2
ENSG00000164442 CITED2 -789250 sc-eQTL 5.89e-01 0.0964 0.178 0.053 CD8_TCM L2
ENSG00000231329 AL031772.1 -654255 sc-eQTL 9.77e-01 0.00545 0.188 0.053 CD8_TCM L2
ENSG00000237499 WAKMAR2 717165 sc-eQTL 4.32e-01 -0.147 0.187 0.053 CD8_TCM L2
ENSG00000024862 CCDC28A -188111 sc-eQTL 2.50e-01 -0.239 0.207 0.05 CD8_TEM L2
ENSG00000051620 HEBP2 181867 sc-eQTL 7.06e-02 0.341 0.188 0.05 CD8_TEM L2
ENSG00000112378 PERP 477979 sc-eQTL 6.80e-01 0.0891 0.216 0.05 CD8_TEM L2
ENSG00000112406 HECA -549682 sc-eQTL 5.92e-01 -0.104 0.195 0.05 CD8_TEM L2
ENSG00000118503 TNFAIP3 718184 sc-eQTL 5.14e-02 -0.258 0.132 0.05 CD8_TEM L2
ENSG00000135597 REPS1 -402863 sc-eQTL 7.47e-01 0.0653 0.203 0.05 CD8_TEM L2
ENSG00000146386 ABRACL -443347 sc-eQTL 4.12e-01 0.128 0.156 0.05 CD8_TEM L2
ENSG00000164442 CITED2 -789250 sc-eQTL 4.19e-01 -0.137 0.169 0.05 CD8_TEM L2
ENSG00000231329 AL031772.1 -654255 sc-eQTL 5.89e-01 0.105 0.193 0.05 CD8_TEM L2
ENSG00000237499 WAKMAR2 717165 sc-eQTL 6.62e-01 -0.0861 0.197 0.05 CD8_TEM L2
ENSG00000024862 CCDC28A -188111 sc-eQTL 6.64e-01 -0.0924 0.212 0.05 NK_HLA L2
ENSG00000051620 HEBP2 181867 sc-eQTL 4.58e-01 0.134 0.181 0.05 NK_HLA L2
ENSG00000112378 PERP 477979 sc-eQTL 9.45e-01 -0.011 0.161 0.05 NK_HLA L2
ENSG00000112406 HECA -549682 sc-eQTL 7.84e-01 -0.0545 0.199 0.05 NK_HLA L2
ENSG00000118503 TNFAIP3 718184 sc-eQTL 8.52e-01 0.023 0.124 0.05 NK_HLA L2
ENSG00000135597 REPS1 -402863 sc-eQTL 1.30e-01 0.296 0.195 0.05 NK_HLA L2
ENSG00000146386 ABRACL -443347 sc-eQTL 3.69e-01 0.145 0.161 0.05 NK_HLA L2
ENSG00000164442 CITED2 -789250 sc-eQTL 6.62e-01 -0.0753 0.172 0.05 NK_HLA L2
ENSG00000237499 WAKMAR2 717165 sc-eQTL 4.76e-01 0.142 0.199 0.05 NK_HLA L2
ENSG00000024862 CCDC28A -188111 sc-eQTL 6.19e-01 -0.103 0.206 0.05 Pro_T L2
ENSG00000051620 HEBP2 181867 sc-eQTL 4.50e-01 0.124 0.164 0.05 Pro_T L2
ENSG00000112378 PERP 477979 sc-eQTL 8.41e-01 -0.0304 0.152 0.05 Pro_T L2
ENSG00000112406 HECA -549682 sc-eQTL 5.00e-01 -0.11 0.162 0.05 Pro_T L2
ENSG00000118503 TNFAIP3 718184 sc-eQTL 5.99e-01 0.0503 0.0956 0.05 Pro_T L2
ENSG00000135597 REPS1 -402863 sc-eQTL 1.60e-01 -0.268 0.19 0.05 Pro_T L2
ENSG00000146386 ABRACL -443347 sc-eQTL 1.58e-01 0.174 0.123 0.05 Pro_T L2
ENSG00000164442 CITED2 -789250 sc-eQTL 4.47e-01 -0.112 0.147 0.05 Pro_T L2
ENSG00000237499 WAKMAR2 717165 sc-eQTL 7.97e-01 -0.0479 0.186 0.05 Pro_T L2
ENSG00000024862 CCDC28A -188111 sc-eQTL 3.28e-02 0.426 0.198 0.051 intMono L2
ENSG00000051620 HEBP2 181867 sc-eQTL 2.86e-01 -0.143 0.134 0.051 intMono L2
ENSG00000112406 HECA -549682 sc-eQTL 5.63e-01 0.0951 0.164 0.051 intMono L2
ENSG00000118503 TNFAIP3 718184 sc-eQTL 6.60e-01 0.0513 0.116 0.051 intMono L2
ENSG00000135540 NHSL1 -107173 sc-eQTL 9.91e-01 -0.00215 0.181 0.051 intMono L2
ENSG00000135597 REPS1 -402863 sc-eQTL 1.46e-02 -0.455 0.185 0.051 intMono L2
ENSG00000146386 ABRACL -443347 sc-eQTL 6.31e-02 0.317 0.169 0.051 intMono L2
ENSG00000164442 CITED2 -789250 sc-eQTL 5.45e-01 -0.101 0.166 0.051 intMono L2
ENSG00000225177 AL590617.2 -107150 sc-eQTL 3.63e-01 -0.185 0.203 0.051 intMono L2
ENSG00000237499 WAKMAR2 717165 sc-eQTL 1.11e-01 0.276 0.172 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000135540 NHSL1 -107173 eQTL 0.00687 -0.152 0.056 0.0 0.0 0.0545
ENSG00000146386 ABRACL -443347 eQTL 3.94e-05 0.218 0.0527 0.0 0.0 0.0545
ENSG00000225177 AL590617.2 -107150 eQTL 0.0247 -0.156 0.0693 0.0 0.0 0.0545
ENSG00000231329 AL031772.1 -654255 eQTL 0.0277 0.0914 0.0415 0.00103 0.0 0.0545
ENSG00000279968 GVQW2 -188254 eQTL 0.000527 0.355 0.102 0.0 0.0 0.0545

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000135540 NHSL1 -107173 6.01e-05 1.32e-05 3.05e-06 3.85e-06 1.43e-06 6.2e-06 9.61e-06 1.01e-06 4.89e-06 3.75e-06 9e-06 3.41e-06 1.25e-05 3.6e-06 5.22e-06 5.77e-06 3.69e-06 3.74e-06 2.27e-06 1.15e-06 2.77e-06 9.11e-06 7.64e-06 1.84e-06 8.91e-06 1.81e-06 3.57e-06 1.52e-06 9.22e-06 6.64e-06 3.29e-06 2.66e-07 8.41e-07 2.74e-06 2.05e-06 8.93e-07 8.71e-07 4.75e-07 8.51e-07 4.28e-07 2.87e-07 1.73e-05 2.65e-06 1.68e-07 6.1e-07 1.63e-06 1.03e-06 2.2e-07 1.78e-07
ENSG00000146386 ABRACL -443347 3.2e-06 9.53e-07 2.87e-07 4.84e-07 1.09e-07 6.38e-07 1.64e-06 6.72e-08 1.08e-06 2.72e-07 1.24e-06 6.07e-07 2.02e-06 2.73e-07 3.88e-07 7.41e-07 2.25e-07 5.5e-07 5.29e-07 1.55e-07 2.43e-07 1.71e-06 9.97e-07 1.32e-07 1.86e-06 2.57e-07 6.16e-07 2.98e-07 9.81e-07 8.51e-07 4.9e-07 2.99e-08 5.86e-08 2.84e-07 3.31e-07 3.3e-08 4.84e-08 7.93e-08 7.45e-08 2.26e-08 5.13e-08 1.91e-06 4.34e-07 1.66e-07 3.4e-08 1.2e-07 8.24e-08 1.93e-09 4.98e-08
ENSG00000225177 AL590617.2 -107150 6.01e-05 1.32e-05 3.05e-06 3.85e-06 1.43e-06 6.2e-06 9.61e-06 1.01e-06 4.89e-06 3.75e-06 9e-06 3.41e-06 1.25e-05 3.6e-06 5.22e-06 5.77e-06 3.69e-06 3.74e-06 2.27e-06 1.15e-06 2.77e-06 9.11e-06 7.64e-06 1.84e-06 8.91e-06 1.81e-06 3.57e-06 1.44e-06 9.22e-06 6.64e-06 3.29e-06 2.66e-07 8.41e-07 2.74e-06 2.05e-06 8.93e-07 8.71e-07 4.75e-07 8.51e-07 4.28e-07 2.87e-07 1.73e-05 2.65e-06 1.68e-07 6.1e-07 1.63e-06 1.06e-06 2.2e-07 1.79e-07