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Genes within 1Mb (chr6:132989005:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 -963165 sc-eQTL 5.05e-01 0.129 0.193 0.051 B L1
ENSG00000079931 MOXD1 587530 sc-eQTL 7.04e-01 -0.0777 0.204 0.051 B L1
ENSG00000079950 STX7 475807 sc-eQTL 2.46e-01 -0.0893 0.0767 0.051 B L1
ENSG00000112303 VNN2 225546 sc-eQTL 4.12e-01 0.119 0.145 0.051 B L1
ENSG00000112306 RPS12 174436 sc-eQTL 4.52e-01 0.0658 0.0874 0.051 B L1
ENSG00000146409 SLC18B1 175666 sc-eQTL 4.30e-01 -0.145 0.184 0.051 B L1
ENSG00000228495 LINC01013 857117 sc-eQTL 3.49e-01 0.113 0.121 0.051 B L1
ENSG00000028839 TBPL1 -963165 sc-eQTL 1.05e-01 -0.232 0.142 0.051 CD4T L1
ENSG00000079950 STX7 475807 sc-eQTL 6.54e-01 0.0668 0.149 0.051 CD4T L1
ENSG00000112303 VNN2 225546 sc-eQTL 6.75e-01 -0.0542 0.129 0.051 CD4T L1
ENSG00000112306 RPS12 174436 sc-eQTL 7.55e-01 0.0273 0.0877 0.051 CD4T L1
ENSG00000146409 SLC18B1 175666 sc-eQTL 9.63e-01 0.00835 0.177 0.051 CD4T L1
ENSG00000028839 TBPL1 -963165 sc-eQTL 4.27e-01 0.112 0.141 0.051 CD8T L1
ENSG00000079950 STX7 475807 sc-eQTL 1.12e-01 -0.234 0.146 0.051 CD8T L1
ENSG00000112303 VNN2 225546 sc-eQTL 7.41e-01 -0.0568 0.172 0.051 CD8T L1
ENSG00000112306 RPS12 174436 sc-eQTL 5.54e-01 0.0347 0.0586 0.051 CD8T L1
ENSG00000146409 SLC18B1 175666 sc-eQTL 9.45e-01 0.0123 0.177 0.051 CD8T L1
ENSG00000028839 TBPL1 -963165 sc-eQTL 3.07e-01 0.157 0.153 0.051 Mono L1
ENSG00000079950 STX7 475807 sc-eQTL 2.92e-01 -0.108 0.102 0.051 Mono L1
ENSG00000093134 VNN3 254240 sc-eQTL 8.59e-01 -0.0314 0.176 0.051 Mono L1
ENSG00000112299 VNN1 274950 sc-eQTL 7.53e-01 -0.0597 0.19 0.051 Mono L1
ENSG00000112303 VNN2 225546 sc-eQTL 2.77e-01 0.146 0.133 0.051 Mono L1
ENSG00000112306 RPS12 174436 sc-eQTL 8.63e-01 0.0139 0.0802 0.051 Mono L1
ENSG00000146409 SLC18B1 175666 sc-eQTL 7.89e-01 0.0425 0.159 0.051 Mono L1
ENSG00000028839 TBPL1 -963165 sc-eQTL 3.83e-01 0.173 0.198 0.051 Other_T L1
ENSG00000079950 STX7 475807 sc-eQTL 3.34e-01 -0.151 0.155 0.051 Other_T L1
ENSG00000112303 VNN2 225546 sc-eQTL 4.15e-01 -0.154 0.188 0.051 Other_T L1
ENSG00000112306 RPS12 174436 sc-eQTL 4.59e-01 0.0553 0.0746 0.051 Other_T L1
ENSG00000146409 SLC18B1 175666 sc-eQTL 2.24e-01 0.249 0.204 0.051 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 -963165 sc-eQTL 3.03e-01 0.22 0.213 0.061 B_Activated L2
ENSG00000079931 MOXD1 587530 sc-eQTL 5.98e-01 -0.103 0.195 0.061 B_Activated L2
ENSG00000079950 STX7 475807 sc-eQTL 6.04e-01 -0.095 0.183 0.061 B_Activated L2
ENSG00000112303 VNN2 225546 sc-eQTL 1.45e-01 -0.283 0.193 0.061 B_Activated L2
ENSG00000112306 RPS12 174436 sc-eQTL 9.82e-01 -0.00234 0.104 0.061 B_Activated L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 7.98e-02 -0.319 0.181 0.061 B_Activated L2
ENSG00000228495 LINC01013 857117 sc-eQTL 3.39e-01 0.167 0.174 0.061 B_Activated L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 7.99e-01 0.0555 0.218 0.052 B_Intermediate L2
ENSG00000079931 MOXD1 587530 sc-eQTL 8.90e-01 -0.0266 0.191 0.052 B_Intermediate L2
ENSG00000079950 STX7 475807 sc-eQTL 5.11e-01 -0.0825 0.125 0.052 B_Intermediate L2
ENSG00000112303 VNN2 225546 sc-eQTL 4.15e-02 -0.383 0.187 0.052 B_Intermediate L2
ENSG00000112306 RPS12 174436 sc-eQTL 9.89e-01 0.00162 0.116 0.052 B_Intermediate L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 9.13e-01 0.0228 0.208 0.052 B_Intermediate L2
ENSG00000228495 LINC01013 857117 sc-eQTL 7.12e-01 -0.0654 0.177 0.052 B_Intermediate L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 6.15e-01 0.0969 0.192 0.051 B_Naive1 L2
ENSG00000079931 MOXD1 587530 sc-eQTL 6.53e-01 -0.0953 0.211 0.051 B_Naive1 L2
ENSG00000079950 STX7 475807 sc-eQTL 4.47e-01 -0.0704 0.0923 0.051 B_Naive1 L2
ENSG00000112303 VNN2 225546 sc-eQTL 7.54e-01 0.0563 0.179 0.051 B_Naive1 L2
ENSG00000112306 RPS12 174436 sc-eQTL 1.01e-01 0.167 0.102 0.051 B_Naive1 L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 9.77e-01 0.00578 0.197 0.051 B_Naive1 L2
ENSG00000228495 LINC01013 857117 sc-eQTL 8.66e-01 -0.022 0.131 0.051 B_Naive1 L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 8.85e-01 0.0295 0.204 0.052 B_Naive2 L2
ENSG00000079931 MOXD1 587530 sc-eQTL 6.35e-01 -0.0947 0.199 0.052 B_Naive2 L2
ENSG00000079950 STX7 475807 sc-eQTL 1.03e-01 -0.177 0.108 0.052 B_Naive2 L2
ENSG00000112303 VNN2 225546 sc-eQTL 1.89e-01 0.261 0.198 0.052 B_Naive2 L2
ENSG00000112306 RPS12 174436 sc-eQTL 2.98e-01 0.11 0.105 0.052 B_Naive2 L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 3.78e-01 -0.177 0.201 0.052 B_Naive2 L2
ENSG00000228495 LINC01013 857117 sc-eQTL 4.95e-01 0.0952 0.139 0.052 B_Naive2 L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 6.08e-02 -0.306 0.162 0.051 CD4_Naive L2
ENSG00000079950 STX7 475807 sc-eQTL 9.93e-01 0.00149 0.16 0.051 CD4_Naive L2
ENSG00000112303 VNN2 225546 sc-eQTL 6.66e-01 0.0641 0.149 0.051 CD4_Naive L2
ENSG00000112306 RPS12 174436 sc-eQTL 9.83e-01 -0.00209 0.0965 0.051 CD4_Naive L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 7.77e-01 0.0527 0.186 0.051 CD4_Naive L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 3.26e-01 -0.171 0.174 0.051 CD4_TCM L2
ENSG00000079950 STX7 475807 sc-eQTL 8.37e-01 0.0361 0.176 0.051 CD4_TCM L2
ENSG00000112303 VNN2 225546 sc-eQTL 1.14e-01 -0.273 0.172 0.051 CD4_TCM L2
ENSG00000112306 RPS12 174436 sc-eQTL 6.37e-01 0.0424 0.0897 0.051 CD4_TCM L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 6.85e-01 0.0844 0.208 0.051 CD4_TCM L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 1.62e-01 -0.288 0.205 0.051 CD4_TEM L2
ENSG00000079950 STX7 475807 sc-eQTL 8.29e-01 0.0445 0.206 0.051 CD4_TEM L2
ENSG00000112303 VNN2 225546 sc-eQTL 6.48e-01 0.0904 0.198 0.051 CD4_TEM L2
ENSG00000112306 RPS12 174436 sc-eQTL 7.55e-01 0.0254 0.0811 0.051 CD4_TEM L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 4.00e-01 0.17 0.201 0.051 CD4_TEM L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 2.76e-01 -0.196 0.179 0.051 CD8_CTL L2
ENSG00000079950 STX7 475807 sc-eQTL 6.27e-02 -0.312 0.166 0.051 CD8_CTL L2
ENSG00000112303 VNN2 225546 sc-eQTL 4.29e-01 0.151 0.19 0.051 CD8_CTL L2
ENSG00000112306 RPS12 174436 sc-eQTL 8.58e-01 0.0183 0.102 0.051 CD8_CTL L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 5.16e-01 0.129 0.198 0.051 CD8_CTL L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 8.56e-01 0.0347 0.191 0.051 CD8_Naive L2
ENSG00000079950 STX7 475807 sc-eQTL 3.84e-01 -0.177 0.203 0.051 CD8_Naive L2
ENSG00000112303 VNN2 225546 sc-eQTL 1.05e-01 -0.284 0.175 0.051 CD8_Naive L2
ENSG00000112306 RPS12 174436 sc-eQTL 9.25e-01 -0.00949 0.101 0.051 CD8_Naive L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 9.97e-01 0.000659 0.202 0.051 CD8_Naive L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 4.07e-01 0.181 0.218 0.051 CD8_TCM L2
ENSG00000079950 STX7 475807 sc-eQTL 3.74e-01 -0.18 0.201 0.051 CD8_TCM L2
ENSG00000112303 VNN2 225546 sc-eQTL 8.34e-01 -0.042 0.2 0.051 CD8_TCM L2
ENSG00000112306 RPS12 174436 sc-eQTL 5.18e-01 0.0632 0.0975 0.051 CD8_TCM L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 2.22e-01 -0.261 0.213 0.051 CD8_TCM L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 1.26e-01 0.298 0.194 0.053 CD8_TEM L2
ENSG00000079950 STX7 475807 sc-eQTL 8.74e-01 0.0338 0.213 0.053 CD8_TEM L2
ENSG00000112303 VNN2 225546 sc-eQTL 8.62e-01 -0.037 0.212 0.053 CD8_TEM L2
ENSG00000112306 RPS12 174436 sc-eQTL 8.99e-01 -0.0145 0.114 0.053 CD8_TEM L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 2.17e-01 0.265 0.214 0.053 CD8_TEM L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 9.03e-02 0.426 0.25 0.063 PB L2
ENSG00000079931 MOXD1 587530 sc-eQTL 3.07e-01 -0.22 0.215 0.063 PB L2
ENSG00000079950 STX7 475807 sc-eQTL 2.08e-01 -0.226 0.179 0.063 PB L2
ENSG00000112303 VNN2 225546 sc-eQTL 1.13e-01 -0.348 0.218 0.063 PB L2
ENSG00000112306 RPS12 174436 sc-eQTL 8.10e-01 -0.0301 0.125 0.063 PB L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 9.86e-01 -0.00415 0.234 0.063 PB L2
ENSG00000228495 LINC01013 857117 sc-eQTL 7.11e-01 0.0572 0.154 0.063 PB L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 4.54e-01 0.154 0.205 0.052 Pro_T L2
ENSG00000079950 STX7 475807 sc-eQTL 3.95e-01 0.156 0.183 0.052 Pro_T L2
ENSG00000112303 VNN2 225546 sc-eQTL 6.45e-01 -0.0908 0.197 0.052 Pro_T L2
ENSG00000112306 RPS12 174436 sc-eQTL 2.85e-01 0.0797 0.0743 0.052 Pro_T L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 3.15e-01 0.194 0.192 0.052 Pro_T L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 7.67e-01 -0.0623 0.21 0.051 Treg L2
ENSG00000079950 STX7 475807 sc-eQTL 3.55e-01 0.183 0.198 0.051 Treg L2
ENSG00000112303 VNN2 225546 sc-eQTL 9.05e-01 0.0199 0.167 0.051 Treg L2
ENSG00000112306 RPS12 174436 sc-eQTL 7.23e-01 0.0261 0.0737 0.051 Treg L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 9.31e-02 -0.349 0.207 0.051 Treg L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 5.25e-01 0.11 0.173 0.051 cMono_IL1B L2
ENSG00000079950 STX7 475807 sc-eQTL 6.11e-01 0.067 0.132 0.051 cMono_IL1B L2
ENSG00000093134 VNN3 254240 sc-eQTL 7.94e-01 -0.0487 0.186 0.051 cMono_IL1B L2
ENSG00000112299 VNN1 274950 sc-eQTL 9.02e-01 0.0232 0.188 0.051 cMono_IL1B L2
ENSG00000112303 VNN2 225546 sc-eQTL 5.69e-01 0.0855 0.15 0.051 cMono_IL1B L2
ENSG00000112306 RPS12 174436 sc-eQTL 3.28e-01 0.0815 0.0832 0.051 cMono_IL1B L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 4.55e-01 0.12 0.161 0.051 cMono_IL1B L2
ENSG00000028839 TBPL1 -963165 sc-eQTL 3.95e-01 0.169 0.198 0.051 cMono_S100A L2
ENSG00000079950 STX7 475807 sc-eQTL 2.62e-01 -0.161 0.143 0.051 cMono_S100A L2
ENSG00000093134 VNN3 254240 sc-eQTL 7.10e-01 0.0665 0.179 0.051 cMono_S100A L2
ENSG00000112299 VNN1 274950 sc-eQTL 6.35e-01 -0.0922 0.194 0.051 cMono_S100A L2
ENSG00000112303 VNN2 225546 sc-eQTL 7.94e-01 0.0332 0.127 0.051 cMono_S100A L2
ENSG00000112306 RPS12 174436 sc-eQTL 7.41e-01 0.0303 0.0916 0.051 cMono_S100A L2
ENSG00000146409 SLC18B1 175666 sc-eQTL 7.59e-01 -0.052 0.17 0.051 cMono_S100A L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 -963165 sc-eQTL 8.06e-01 0.0513 0.208 0.051 B_Memory LOneK1K
ENSG00000079931 MOXD1 587530 sc-eQTL 6.03e-01 -0.105 0.202 0.051 B_Memory LOneK1K
ENSG00000079950 STX7 475807 sc-eQTL 1.94e-01 -0.149 0.114 0.051 B_Memory LOneK1K
ENSG00000112303 VNN2 225546 sc-eQTL 1.76e-01 -0.245 0.181 0.051 B_Memory LOneK1K
ENSG00000112306 RPS12 174436 sc-eQTL 4.93e-01 -0.071 0.103 0.051 B_Memory LOneK1K
ENSG00000146409 SLC18B1 175666 sc-eQTL 1.11e-01 -0.302 0.189 0.051 B_Memory LOneK1K
ENSG00000228495 LINC01013 857117 sc-eQTL 7.55e-01 -0.0573 0.183 0.051 B_Memory LOneK1K
ENSG00000028839 TBPL1 -963165 sc-eQTL 6.51e-01 0.0874 0.193 0.051 B_Naive LOneK1K
ENSG00000079931 MOXD1 587530 sc-eQTL 4.73e-01 -0.152 0.212 0.051 B_Naive LOneK1K
ENSG00000079950 STX7 475807 sc-eQTL 1.81e-01 -0.116 0.0866 0.051 B_Naive LOneK1K
ENSG00000112303 VNN2 225546 sc-eQTL 2.54e-01 0.193 0.168 0.051 B_Naive LOneK1K
ENSG00000112306 RPS12 174436 sc-eQTL 1.96e-01 0.132 0.102 0.051 B_Naive LOneK1K
ENSG00000146409 SLC18B1 175666 sc-eQTL 5.33e-01 -0.12 0.193 0.051 B_Naive LOneK1K
ENSG00000228495 LINC01013 857117 sc-eQTL 6.57e-01 0.0544 0.122 0.051 B_Naive LOneK1K
ENSG00000028839 TBPL1 -963165 sc-eQTL 2.97e-01 0.164 0.157 0.051 CD14_Mono LOneK1K
ENSG00000079950 STX7 475807 sc-eQTL 7.65e-01 -0.0327 0.109 0.051 CD14_Mono LOneK1K
ENSG00000093134 VNN3 254240 sc-eQTL 8.51e-01 0.0334 0.178 0.051 CD14_Mono LOneK1K
ENSG00000112299 VNN1 274950 sc-eQTL 8.20e-01 -0.0423 0.186 0.051 CD14_Mono LOneK1K
ENSG00000112303 VNN2 225546 sc-eQTL 3.63e-01 0.112 0.123 0.051 CD14_Mono LOneK1K
ENSG00000112306 RPS12 174436 sc-eQTL 4.12e-01 0.0691 0.0842 0.051 CD14_Mono LOneK1K
ENSG00000146409 SLC18B1 175666 sc-eQTL 6.88e-01 0.0602 0.15 0.051 CD14_Mono LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000112299 VNN1 274950 pQTL 7.79e-05 -0.279 0.0704 0.0 0.0 0.0704
ENSG00000112299 VNN1 274950 eQTL 0.0148 -0.106 0.0435 0.0 0.0 0.0711
ENSG00000112303 VNN2 225546 pQTL 9.2e-06 0.225 0.0506 0.0 0.0 0.0704
ENSG00000146409 SLC18B1 175666 eQTL 0.0426 0.0908 0.0447 0.0 0.0 0.0711
ENSG00000234484 AL032821.1 236330 eQTL 0.0198 -0.145 0.0623 0.0 0.0 0.0711

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000112299 VNN1 274950 1.3e-06 9.15e-07 2.81e-07 6.06e-07 2.1e-07 4.51e-07 1.24e-06 3.49e-07 1.16e-06 3.77e-07 1.39e-06 6.02e-07 2e-06 2.54e-07 4.48e-07 7.17e-07 8.4e-07 5.45e-07 4.54e-07 5.19e-07 3.87e-07 1.17e-06 9.29e-07 5.1e-07 1.97e-06 3.28e-07 6.13e-07 6.46e-07 1.19e-06 1.23e-06 6.02e-07 4.57e-08 2.34e-07 4.87e-07 4.28e-07 3.95e-07 3.96e-07 1.36e-07 2.19e-07 3.01e-08 2.82e-07 1.49e-06 6.87e-08 1.23e-08 1.81e-07 7.16e-08 1.71e-07 8.41e-08 5.63e-08
ENSG00000146409 SLC18B1 175666 2.18e-06 2.43e-06 2.97e-07 1.41e-06 4.87e-07 7.16e-07 1.32e-06 4.01e-07 1.76e-06 6.94e-07 1.92e-06 1.39e-06 3.33e-06 8.7e-07 4.99e-07 1.16e-06 1.04e-06 1.44e-06 5.4e-07 6.51e-07 6.5e-07 2.17e-06 1.86e-06 9.49e-07 2.61e-06 1.1e-06 1.04e-06 1.07e-06 1.78e-06 1.66e-06 1.15e-06 2.8e-07 3.79e-07 8.93e-07 8.35e-07 6.72e-07 7.3e-07 3.66e-07 6.97e-07 2.04e-07 2.88e-07 2.92e-06 3.55e-07 1.38e-07 3.43e-07 3.08e-07 3.34e-07 1.45e-07 2.46e-07
ENSG00000234484 AL032821.1 236330 1.29e-06 1.03e-06 3.12e-07 1.14e-06 3.4e-07 6.01e-07 1.54e-06 3.65e-07 1.5e-06 4.82e-07 1.84e-06 7.37e-07 2.5e-06 2.81e-07 5.34e-07 9.14e-07 8.89e-07 7.72e-07 7.73e-07 6.55e-07 6.81e-07 1.72e-06 9.97e-07 6.33e-07 2.31e-06 5.38e-07 8.73e-07 7.19e-07 1.44e-06 1.2e-06 7.79e-07 1.3e-07 2.33e-07 7.04e-07 6.24e-07 4.37e-07 5.93e-07 1.69e-07 4.12e-07 2.42e-07 2.84e-07 1.66e-06 5.73e-08 3.38e-08 1.72e-07 1.26e-07 2.26e-07 8.8e-08 9.51e-08