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Genes within 1Mb (chr6:127564382:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.69e-01 -0.00214 0.0552 0.209 B L1
ENSG00000118518 RNF146 297772 sc-eQTL 2.86e-02 -0.192 0.0869 0.209 B L1
ENSG00000152894 PTPRK -956292 sc-eQTL 4.49e-01 0.0505 0.0666 0.209 B L1
ENSG00000093144 ECHDC1 220773 sc-eQTL 5.94e-01 -0.0357 0.0668 0.209 CD4T L1
ENSG00000118518 RNF146 297772 sc-eQTL 5.28e-01 -0.0577 0.0912 0.209 CD4T L1
ENSG00000172673 THEMIS -354249 sc-eQTL 4.51e-01 -0.0526 0.0696 0.209 CD4T L1
ENSG00000214338 SOGA3 45191 sc-eQTL 7.49e-01 0.019 0.0592 0.209 CD4T L1
ENSG00000093144 ECHDC1 220773 sc-eQTL 1.96e-01 -0.105 0.0809 0.209 CD8T L1
ENSG00000118518 RNF146 297772 sc-eQTL 3.22e-01 0.103 0.104 0.209 CD8T L1
ENSG00000152894 PTPRK -956292 sc-eQTL 2.20e-01 0.0695 0.0565 0.209 CD8T L1
ENSG00000172673 THEMIS -354249 sc-eQTL 2.28e-01 -0.0977 0.0808 0.209 CD8T L1
ENSG00000227945 AL590006.1 -463504 sc-eQTL 8.90e-01 0.0113 0.0811 0.209 CD8T L1
ENSG00000093144 ECHDC1 220773 sc-eQTL 4.05e-01 0.0749 0.0897 0.209 DC L1
ENSG00000118518 RNF146 297772 sc-eQTL 2.98e-01 -0.114 0.109 0.209 DC L1
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.49e-01 0.00415 0.0652 0.209 Mono L1
ENSG00000118518 RNF146 297772 sc-eQTL 6.22e-01 0.0358 0.0724 0.209 Mono L1
ENSG00000093144 ECHDC1 220773 sc-eQTL 5.74e-01 -0.0455 0.0808 0.208 NK L1
ENSG00000118518 RNF146 297772 sc-eQTL 8.01e-01 -0.0236 0.0935 0.208 NK L1
ENSG00000172673 THEMIS -354249 sc-eQTL 9.11e-01 0.0118 0.106 0.208 NK L1
ENSG00000093144 ECHDC1 220773 sc-eQTL 6.10e-01 0.0376 0.0736 0.209 Other_T L1
ENSG00000118518 RNF146 297772 sc-eQTL 5.90e-01 0.0572 0.106 0.209 Other_T L1
ENSG00000172673 THEMIS -354249 sc-eQTL 1.68e-01 -0.106 0.0766 0.209 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 220773 sc-eQTL 1.09e-01 0.204 0.127 0.204 B_Activated L2
ENSG00000118518 RNF146 297772 sc-eQTL 2.76e-01 -0.141 0.129 0.204 B_Activated L2
ENSG00000152894 PTPRK -956292 sc-eQTL 5.08e-01 -0.0785 0.118 0.204 B_Activated L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 7.10e-01 0.0321 0.0863 0.21 B_Intermediate L2
ENSG00000118518 RNF146 297772 sc-eQTL 4.80e-01 0.0783 0.111 0.21 B_Intermediate L2
ENSG00000152894 PTPRK -956292 sc-eQTL 3.46e-01 0.102 0.108 0.21 B_Intermediate L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 7.07e-01 -0.0361 0.096 0.207 B_Memory L2
ENSG00000118518 RNF146 297772 sc-eQTL 9.17e-02 -0.188 0.111 0.207 B_Memory L2
ENSG00000152894 PTPRK -956292 sc-eQTL 4.84e-01 0.0726 0.104 0.207 B_Memory L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 4.27e-01 -0.0523 0.0657 0.209 B_Naive1 L2
ENSG00000118518 RNF146 297772 sc-eQTL 7.13e-02 -0.186 0.103 0.209 B_Naive1 L2
ENSG00000152894 PTPRK -956292 sc-eQTL 4.50e-01 0.063 0.0833 0.209 B_Naive1 L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 7.70e-01 0.0243 0.0831 0.208 B_Naive2 L2
ENSG00000118518 RNF146 297772 sc-eQTL 2.38e-02 -0.259 0.114 0.208 B_Naive2 L2
ENSG00000152894 PTPRK -956292 sc-eQTL 4.84e-01 0.0643 0.0917 0.208 B_Naive2 L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 3.54e-01 0.108 0.116 0.207 CD4_CTL L2
ENSG00000118518 RNF146 297772 sc-eQTL 9.46e-01 -0.0077 0.114 0.207 CD4_CTL L2
ENSG00000172673 THEMIS -354249 sc-eQTL 6.23e-01 0.0377 0.0766 0.207 CD4_CTL L2
ENSG00000214338 SOGA3 45191 sc-eQTL 8.10e-01 -0.0247 0.102 0.207 CD4_CTL L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.92e-01 -0.000777 0.0813 0.209 CD4_Naive L2
ENSG00000118518 RNF146 297772 sc-eQTL 9.81e-01 -0.0023 0.0971 0.209 CD4_Naive L2
ENSG00000172673 THEMIS -354249 sc-eQTL 5.12e-01 -0.0457 0.0697 0.209 CD4_Naive L2
ENSG00000214338 SOGA3 45191 sc-eQTL 9.83e-01 -0.00144 0.0664 0.209 CD4_Naive L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 3.29e-01 -0.0817 0.0836 0.209 CD4_TCM L2
ENSG00000118518 RNF146 297772 sc-eQTL 2.26e-01 -0.131 0.108 0.209 CD4_TCM L2
ENSG00000172673 THEMIS -354249 sc-eQTL 3.97e-02 -0.164 0.0792 0.209 CD4_TCM L2
ENSG00000214338 SOGA3 45191 sc-eQTL 7.36e-01 0.0278 0.0823 0.209 CD4_TCM L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 3.23e-01 -0.096 0.097 0.209 CD4_TEM L2
ENSG00000118518 RNF146 297772 sc-eQTL 5.63e-01 -0.064 0.111 0.209 CD4_TEM L2
ENSG00000172673 THEMIS -354249 sc-eQTL 4.75e-01 -0.0632 0.0884 0.209 CD4_TEM L2
ENSG00000214338 SOGA3 45191 sc-eQTL 7.80e-01 -0.0256 0.0915 0.209 CD4_TEM L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 2.38e-01 -0.117 0.0991 0.209 CD8_CTL L2
ENSG00000118518 RNF146 297772 sc-eQTL 9.37e-01 0.00931 0.118 0.209 CD8_CTL L2
ENSG00000152894 PTPRK -956292 sc-eQTL 5.84e-01 -0.0545 0.0993 0.209 CD8_CTL L2
ENSG00000172673 THEMIS -354249 sc-eQTL 5.01e-01 -0.0572 0.0849 0.209 CD8_CTL L2
ENSG00000227945 AL590006.1 -463504 sc-eQTL 2.56e-01 0.0959 0.0842 0.209 CD8_CTL L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 2.69e-02 -0.222 0.0998 0.209 CD8_Naive L2
ENSG00000118518 RNF146 297772 sc-eQTL 4.85e-01 0.0755 0.108 0.209 CD8_Naive L2
ENSG00000152894 PTPRK -956292 sc-eQTL 1.54e-01 0.113 0.079 0.209 CD8_Naive L2
ENSG00000172673 THEMIS -354249 sc-eQTL 3.77e-01 -0.0595 0.0672 0.209 CD8_Naive L2
ENSG00000227945 AL590006.1 -463504 sc-eQTL 4.82e-01 0.0723 0.103 0.209 CD8_Naive L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 5.66e-01 0.0592 0.103 0.208 CD8_TCM L2
ENSG00000118518 RNF146 297772 sc-eQTL 4.37e-01 -0.093 0.119 0.208 CD8_TCM L2
ENSG00000152894 PTPRK -956292 sc-eQTL 5.80e-02 -0.185 0.0968 0.208 CD8_TCM L2
ENSG00000172673 THEMIS -354249 sc-eQTL 5.54e-01 -0.0619 0.104 0.208 CD8_TCM L2
ENSG00000227945 AL590006.1 -463504 sc-eQTL 6.95e-01 -0.0376 0.0956 0.208 CD8_TCM L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 2.20e-01 0.142 0.115 0.208 CD8_TEM L2
ENSG00000118518 RNF146 297772 sc-eQTL 6.32e-01 0.0564 0.118 0.208 CD8_TEM L2
ENSG00000152894 PTPRK -956292 sc-eQTL 4.74e-01 0.0664 0.0925 0.208 CD8_TEM L2
ENSG00000172673 THEMIS -354249 sc-eQTL 1.04e-01 0.17 0.104 0.208 CD8_TEM L2
ENSG00000227945 AL590006.1 -463504 sc-eQTL 9.13e-01 0.00982 0.0897 0.208 CD8_TEM L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 4.72e-01 -0.0755 0.105 0.206 MAIT L2
ENSG00000118518 RNF146 297772 sc-eQTL 4.65e-01 0.0811 0.111 0.206 MAIT L2
ENSG00000172673 THEMIS -354249 sc-eQTL 6.37e-01 -0.0418 0.0885 0.206 MAIT L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.07e-01 -0.0133 0.113 0.211 NK_CD56bright L2
ENSG00000118518 RNF146 297772 sc-eQTL 6.21e-01 0.0586 0.119 0.211 NK_CD56bright L2
ENSG00000172673 THEMIS -354249 sc-eQTL 2.21e-01 -0.105 0.0859 0.211 NK_CD56bright L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 1.48e-01 -0.133 0.0914 0.209 NK_CD56dim L2
ENSG00000118518 RNF146 297772 sc-eQTL 4.57e-01 0.0784 0.105 0.209 NK_CD56dim L2
ENSG00000172673 THEMIS -354249 sc-eQTL 8.28e-01 0.0227 0.104 0.209 NK_CD56dim L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 8.35e-01 -0.0252 0.121 0.212 NK_HLA L2
ENSG00000118518 RNF146 297772 sc-eQTL 2.44e-01 0.145 0.124 0.212 NK_HLA L2
ENSG00000172673 THEMIS -354249 sc-eQTL 9.99e-01 -0.000163 0.0972 0.212 NK_HLA L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 8.82e-01 -0.0148 0.0998 0.209 NK_cytokine L2
ENSG00000118518 RNF146 297772 sc-eQTL 1.98e-02 -0.239 0.102 0.209 NK_cytokine L2
ENSG00000172673 THEMIS -354249 sc-eQTL 4.08e-01 0.0806 0.0973 0.209 NK_cytokine L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 1.62e-01 -0.164 0.117 0.226 PB L2
ENSG00000118518 RNF146 297772 sc-eQTL 1.78e-01 0.212 0.156 0.226 PB L2
ENSG00000152894 PTPRK -956292 sc-eQTL 5.49e-01 0.0655 0.109 0.226 PB L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 7.16e-02 0.161 0.0889 0.209 Pro_T L2
ENSG00000118518 RNF146 297772 sc-eQTL 3.72e-02 0.227 0.108 0.209 Pro_T L2
ENSG00000172673 THEMIS -354249 sc-eQTL 9.67e-01 0.00319 0.0761 0.209 Pro_T L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 1.99e-01 -0.135 0.105 0.209 Treg L2
ENSG00000118518 RNF146 297772 sc-eQTL 3.82e-01 -0.1 0.114 0.209 Treg L2
ENSG00000172673 THEMIS -354249 sc-eQTL 7.07e-01 -0.0423 0.112 0.209 Treg L2
ENSG00000214338 SOGA3 45191 sc-eQTL 7.68e-01 0.0282 0.0954 0.209 Treg L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 6.15e-02 0.198 0.105 0.22 cDC L2
ENSG00000118518 RNF146 297772 sc-eQTL 6.91e-01 -0.0466 0.117 0.22 cDC L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 2.74e-01 0.0802 0.0731 0.209 cMono_IL1B L2
ENSG00000118518 RNF146 297772 sc-eQTL 4.83e-01 0.0608 0.0866 0.209 cMono_IL1B L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.40e-01 -0.00646 0.0861 0.209 cMono_S100A L2
ENSG00000118518 RNF146 297772 sc-eQTL 4.73e-01 0.067 0.0933 0.209 cMono_S100A L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 4.03e-01 0.103 0.122 0.206 gdT L2
ENSG00000118518 RNF146 297772 sc-eQTL 8.39e-01 -0.0252 0.124 0.206 gdT L2
ENSG00000172673 THEMIS -354249 sc-eQTL 1.41e-01 -0.172 0.116 0.206 gdT L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.28e-01 -0.0088 0.0974 0.207 intMono L2
ENSG00000118518 RNF146 297772 sc-eQTL 5.33e-01 0.0641 0.103 0.207 intMono L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 3.69e-02 -0.208 0.0988 0.21 ncMono L2
ENSG00000118518 RNF146 297772 sc-eQTL 6.24e-02 -0.179 0.0955 0.21 ncMono L2
ENSG00000093144 ECHDC1 220773 sc-eQTL 4.02e-01 -0.0808 0.0961 0.22 pDC L2
ENSG00000118518 RNF146 297772 sc-eQTL 1.80e-01 -0.164 0.122 0.22 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.96e-01 0.000324 0.0737 0.209 B_Memory LOneK1K
ENSG00000118518 RNF146 297772 sc-eQTL 1.44e-01 -0.154 0.105 0.209 B_Memory LOneK1K
ENSG00000152894 PTPRK -956292 sc-eQTL 4.20e-01 0.0774 0.0958 0.209 B_Memory LOneK1K
ENSG00000093144 ECHDC1 220773 sc-eQTL 9.44e-01 0.00419 0.0601 0.209 B_Naive LOneK1K
ENSG00000118518 RNF146 297772 sc-eQTL 1.94e-03 -0.316 0.101 0.209 B_Naive LOneK1K
ENSG00000152894 PTPRK -956292 sc-eQTL 2.43e-01 0.088 0.0752 0.209 B_Naive LOneK1K
ENSG00000093144 ECHDC1 220773 sc-eQTL 5.93e-01 0.036 0.0672 0.209 CD14_Mono LOneK1K
ENSG00000118518 RNF146 297772 sc-eQTL 2.29e-01 0.0964 0.0799 0.209 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 220773 sc-eQTL 6.95e-02 -0.165 0.0907 0.207 CD16_Mono LOneK1K
ENSG00000118518 RNF146 297772 sc-eQTL 9.38e-02 -0.143 0.0847 0.207 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 220773 sc-eQTL 5.79e-01 -0.0479 0.0861 0.209 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 297772 sc-eQTL 6.73e-01 -0.0414 0.0979 0.209 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -354249 sc-eQTL 7.31e-01 0.0362 0.105 0.209 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 220773 eQTL 4.55e-07 0.1 0.0197 0.0 0.0 0.225
ENSG00000184530 C6orf58 44927 pQTL 0.0544 -0.0725 0.0376 0.00108 0.0 0.224
ENSG00000189367 KIAA0408 104993 eQTL 0.00765 -0.12 0.0449 0.00286 0.00133 0.225
ENSG00000217325 PRELID1P1 920894 eQTL 0.00338 0.14 0.0476 0.0 0.00334 0.225

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 220773 1.39e-06 1.52e-06 2.74e-07 1.28e-06 4.74e-07 6.52e-07 1.36e-06 3.77e-07 1.74e-06 7.15e-07 2.07e-06 1.18e-06 2.62e-06 4.3e-07 3.88e-07 1.03e-06 1.16e-06 1.1e-06 5.54e-07 6.02e-07 6.64e-07 1.92e-06 1.35e-06 6.86e-07 2.35e-06 8.08e-07 1.03e-06 1.07e-06 1.66e-06 1.29e-06 8.46e-07 2.7e-07 3.85e-07 6.08e-07 7.57e-07 6.2e-07 7.14e-07 3.26e-07 5.07e-07 2.28e-07 2.89e-07 2.12e-06 3.43e-07 1.41e-07 3.91e-07 3.44e-07 3.78e-07 2.43e-07 2.83e-07
ENSG00000189367 KIAA0408 104993 4.54e-06 4.98e-06 6.91e-07 2.96e-06 1.59e-06 1.63e-06 4.48e-06 1.04e-06 5.14e-06 2.39e-06 5.25e-06 3.54e-06 7.06e-06 2.31e-06 1.35e-06 3.77e-06 1.78e-06 3.49e-06 1.54e-06 1.19e-06 3.02e-06 4.97e-06 4.46e-06 1.48e-06 6.48e-06 2.02e-06 2.43e-06 1.77e-06 4.58e-06 4.45e-06 2.79e-06 3.85e-07 6.5e-07 1.66e-06 2.07e-06 1.17e-06 9.78e-07 4.39e-07 8.6e-07 5e-07 7.54e-07 5.58e-06 3.83e-07 1.56e-07 5.92e-07 1.19e-06 1.03e-06 6.45e-07 4.68e-07
ENSG00000217325 PRELID1P1 920894 2.74e-07 1.3e-07 4.98e-08 1.81e-07 1.01e-07 9.9e-08 1.53e-07 5.43e-08 1.45e-07 5.42e-08 1.54e-07 9e-08 1.47e-07 6.76e-08 6.12e-08 7.36e-08 4.17e-08 1.27e-07 6.07e-08 4.3e-08 1.22e-07 1.24e-07 1.44e-07 3.03e-08 1.46e-07 1.21e-07 1.1e-07 9.74e-08 1.16e-07 1.07e-07 9.7e-08 3.39e-08 3.73e-08 8e-08 5.99e-08 3.04e-08 5.37e-08 8.63e-08 6.86e-08 4.19e-08 5.05e-08 1.36e-07 5.2e-08 1.32e-08 3.81e-08 1.92e-08 1.2e-07 1.93e-09 4.99e-08