Genes within 1Mb (chr12:110433270:A:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076513 ANKRD13A 434084 sc-eQTL 3.32e-01 0.199 0.205 0.059 PB L2
ENSG00000110906 KCTD10 955911 sc-eQTL 1.98e-01 0.339 0.262 0.059 PB L2
ENSG00000110921 MVK 860015 sc-eQTL 7.00e-02 0.445 0.243 0.059 PB L2
ENSG00000111229 ARPC3 -17152 sc-eQTL 8.05e-01 -0.0359 0.145 0.059 PB L2
ENSG00000111231 GPN3 -35998 sc-eQTL 6.32e-01 -0.102 0.212 0.059 PB L2
ENSG00000111237 VPS29 -68841 sc-eQTL 8.57e-01 0.0328 0.182 0.059 PB L2
ENSG00000111252 SH2B3 -972678 sc-eQTL 1.35e-01 0.368 0.244 0.059 PB L2
ENSG00000122970 IFT81 308935 sc-eQTL 5.95e-01 0.104 0.196 0.059 PB L2
ENSG00000122986 HVCN1 -271680 sc-eQTL 3.26e-01 0.141 0.143 0.059 PB L2
ENSG00000139428 MMAB 859690 sc-eQTL 3.06e-03 -0.693 0.229 0.059 PB L2
ENSG00000139433 GLTP 552729 sc-eQTL 1.69e-03 0.801 0.249 0.059 PB L2
ENSG00000139436 GIT2 436881 sc-eQTL 4.49e-01 0.201 0.264 0.059 PB L2
ENSG00000139437 TCHP 533006 sc-eQTL 6.88e-01 -0.0979 0.244 0.059 PB L2
ENSG00000151148 UBE3B 955868 sc-eQTL 8.21e-01 0.0569 0.251 0.059 PB L2
ENSG00000174437 ATP2A2 152514 sc-eQTL 1.05e-01 -0.262 0.16 0.059 PB L2
ENSG00000174456 C12orf76 359636 sc-eQTL 3.01e-01 -0.25 0.241 0.059 PB L2
ENSG00000186298 PPP1CC -309669 sc-eQTL 8.00e-01 -0.0523 0.206 0.059 PB L2
ENSG00000196510 ANAPC7 29540 sc-eQTL 8.17e-01 0.0543 0.234 0.059 PB L2
ENSG00000196850 PPTC7 -150048 sc-eQTL 2.62e-01 0.266 0.236 0.059 PB L2
ENSG00000198324 PHETA1 -935851 sc-eQTL 5.60e-01 0.135 0.231 0.059 PB L2
ENSG00000204852 TCTN1 -180757 sc-eQTL 1.55e-02 0.481 0.196 0.059 PB L2
ENSG00000204856 FAM216A -35145 sc-eQTL 4.60e-01 0.187 0.252 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111199 TRPV4 599869 eQTL 0.0221 0.157 0.0683 0.0 0.0 0.0432
ENSG00000139437 TCHP 532996 eQTL 0.0208 0.0929 0.0401 0.0 0.0 0.0432
ENSG00000286220 AC007546.3 359584 eQTL 0.0498 0.173 0.0879 0.0 0.0 0.0432


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000151148 \N 955868 2.66e-07 1.01e-07 3.72e-08 1.79e-07 8.83e-08 9.3e-08 1.42e-07 5.49e-08 1.42e-07 4.38e-08 1.62e-07 8.02e-08 1.27e-07 6.21e-08 5.55e-08 8.01e-08 4.94e-08 1.14e-07 5.36e-08 4.03e-08 1.04e-07 1.3e-07 1.3e-07 4.54e-08 1.31e-07 1.15e-07 1.12e-07 8.71e-08 9.88e-08 1.09e-07 9.58e-08 3.96e-08 3.28e-08 8.25e-08 9.15e-08 3.94e-08 5.01e-08 9.56e-08 8e-08 3.07e-08 4.6e-08 1.36e-07 4.14e-08 2.88e-08 5.43e-08 1.69e-08 1.26e-07 3.89e-09 5.09e-08
ENSG00000204852 \N -180757 2.65e-06 2.64e-06 3.09e-07 1.7e-06 4.43e-07 8.48e-07 1.55e-06 5.89e-07 1.75e-06 7.7e-07 2.11e-06 1.34e-06 3.49e-06 1.39e-06 7e-07 1.1e-06 9.55e-07 1.68e-06 1.49e-06 1.12e-06 1.28e-06 2.35e-06 1.82e-06 1.01e-06 3.16e-06 1.2e-06 1.13e-06 1.65e-06 1.87e-06 1.63e-06 1.45e-06 2.83e-07 5.05e-07 6.34e-07 1.02e-06 9.57e-07 7.76e-07 4.9e-07 6.21e-07 2.14e-07 3.59e-07 3.49e-06 6.22e-07 1.66e-07 3.75e-07 3.44e-07 4.08e-07 2.3e-07 2.41e-07
ENSG00000277595 \N 401025 7.3e-07 3.47e-07 1.27e-07 3.48e-07 1.06e-07 1.71e-07 4.25e-07 8.17e-08 2.6e-07 1.65e-07 3.66e-07 1.96e-07 5.09e-07 1.23e-07 1.71e-07 1.26e-07 1.38e-07 3.39e-07 2.79e-07 1.51e-07 2.17e-07 2.51e-07 2.77e-07 1.06e-07 5.15e-07 2.2e-07 1.78e-07 2.19e-07 2.66e-07 2.89e-07 2e-07 7.03e-08 5.63e-08 1.17e-07 2.58e-07 1.44e-07 8.35e-08 7.51e-08 5.98e-08 8.3e-08 4.63e-08 4.04e-07 5.09e-08 1.84e-08 1.49e-07 1.35e-08 8.75e-08 1.26e-08 4.71e-08