Genes within 1Mb (chr12:109942719:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076513 ANKRD13A -56467 eQTL 7.91e-15 -0.146 0.0185 0.00103 0.0 0.0765
ENSG00000111199 TRPV4 109318 eQTL 7.28e-05 -0.198 0.0497 0.0 0.0 0.0765
ENSG00000111229 ARPC3 -507618 eQTL 3.63e-12 -0.0983 0.014 0.0 0.0 0.0765
ENSG00000111231 GPN3 -526549 eQTL 1.26e-37 -0.483 0.0361 0.0 0.0 0.0765
ENSG00000111237 VPS29 -559398 eQTL 2.90e-06 -0.0998 0.0212 0.0 0.0 0.0765
ENSG00000139437 TCHP 42445 eQTL 2.00e-04 0.109 0.0292 0.0 0.0 0.0765
ENSG00000174456 C12orf76 -130915 eQTL 4.98e-06 -0.166 0.0361 0.00298 0.00238 0.0765
ENSG00000204856 FAM216A -526062 eQTL 1.59e-13 -0.273 0.0364 0.0 0.0 0.0765
ENSG00000277299 AC084876.1 -5670 eQTL 3.17e-02 -0.114 0.0528 0.0 0.0 0.0765
ENSG00000277595 AC007546.1 -89526 eQTL 9.37e-02 -0.0486 0.029 0.00232 0.0012 0.0765
ENSG00000278993 AC002350.1 -558895 eQTL 6.89e-03 -0.141 0.0519 0.00283 0.00139 0.0765
ENSG00000280426 AC084876.2 -56408 eQTL 3.64e-06 -0.16 0.0344 0.0107 0.00972 0.0765


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000076513 ANKRD13A -56467 1.86e-05 2.26e-05 2.96e-06 1.15e-05 3.26e-06 7.99e-06 2.29e-05 3.78e-06 1.97e-05 9.45e-06 2.6e-05 9.68e-06 3.48e-05 7.61e-06 5.19e-06 1.03e-05 9.88e-06 1.53e-05 4.73e-06 5.07e-06 8.72e-06 1.97e-05 1.77e-05 4.74e-06 2.77e-05 5.39e-06 9.55e-06 8.03e-06 1.8e-05 1.32e-05 1.29e-05 1.38e-06 1.88e-06 4.2e-06 8.09e-06 3.76e-06 1.97e-06 2.82e-06 3.24e-06 2.38e-06 1.46e-06 2.31e-05 2.7e-06 3.63e-07 1.97e-06 2.77e-06 3.07e-06 1.29e-06 1.3e-06
ENSG00000111199 TRPV4 109318 9.43e-06 1.18e-05 1.28e-06 6.11e-06 2.5e-06 4.24e-06 1.03e-05 2.16e-06 1e-05 5.31e-06 1.33e-05 5.78e-06 1.55e-05 3.77e-06 2.82e-06 6.27e-06 4.59e-06 7.08e-06 2.61e-06 2.8e-06 5.11e-06 9.62e-06 7.22e-06 2.82e-06 1.32e-05 3.73e-06 6.28e-06 4.06e-06 8.8e-06 7.65e-06 5.65e-06 1e-06 1.21e-06 2.91e-06 4.62e-06 2.31e-06 1.72e-06 1.96e-06 1.6e-06 1.04e-06 9.55e-07 1.25e-05 1.64e-06 2.64e-07 7.94e-07 1.75e-06 1.42e-06 7.51e-07 4.78e-07
ENSG00000111229 ARPC3 -507618 7.87e-07 3.77e-07 1.05e-07 4.31e-07 1.12e-07 2.16e-07 4.53e-07 1.54e-07 3.03e-07 2.14e-07 6.56e-07 3.27e-07 6e-07 1.1e-07 2.07e-07 1.61e-07 2.77e-07 3.39e-07 1.89e-07 1.71e-07 1.92e-07 3.1e-07 3.03e-07 1.19e-07 5.15e-07 2.13e-07 2.72e-07 2.24e-07 2.4e-07 3.93e-07 2.55e-07 3.51e-08 4.49e-08 1.37e-07 3.48e-07 1.55e-07 8.43e-08 1.26e-07 4.17e-08 3.09e-08 4.4e-08 2.9e-07 6.75e-08 5.68e-09 1.71e-07 1.35e-08 8.01e-08 5.66e-08 5.95e-08
ENSG00000111231 GPN3 -526549 7.23e-07 3.11e-07 9.16e-08 3.96e-07 1.05e-07 1.97e-07 4.09e-07 1.4e-07 2.66e-07 1.89e-07 5.29e-07 2.98e-07 5.39e-07 1.07e-07 1.57e-07 1.46e-07 2.11e-07 3.02e-07 1.62e-07 1.53e-07 1.86e-07 2.76e-07 2.77e-07 1.03e-07 4.46e-07 2e-07 2.52e-07 1.97e-07 2.11e-07 3.3e-07 2.11e-07 3.28e-08 5.19e-08 1.21e-07 3.08e-07 1.49e-07 1.11e-07 9.84e-08 5.54e-08 5.12e-08 3.43e-08 2.65e-07 6.24e-08 1.62e-08 1.47e-07 1.25e-08 9.68e-08 3.13e-08 6.15e-08
ENSG00000111237 VPS29 -559398 5.74e-07 2.5e-07 7.87e-08 3.43e-07 9.72e-08 1.57e-07 3.44e-07 1.01e-07 2.26e-07 1.5e-07 3.97e-07 2.11e-07 4.11e-07 9.18e-08 1.27e-07 1.14e-07 1.35e-07 2.83e-07 1.27e-07 1.17e-07 1.61e-07 2.3e-07 2.26e-07 5.6e-08 3.41e-07 1.82e-07 2.08e-07 1.67e-07 1.58e-07 2.26e-07 1.88e-07 5.82e-08 5.73e-08 1.24e-07 2.84e-07 1.09e-07 1.1e-07 1.09e-07 4.78e-08 7.39e-08 3.6e-08 2.15e-07 5.51e-08 1.98e-08 1.23e-07 1.78e-08 9.38e-08 2.28e-08 5.19e-08
ENSG00000139428 \N 369139 1.33e-06 9.53e-07 2.77e-07 1.01e-06 3.6e-07 4.73e-07 1.07e-06 3.65e-07 1.1e-06 3.82e-07 1.48e-06 5.97e-07 1.62e-06 2.59e-07 4.61e-07 6e-07 7.88e-07 5.48e-07 5.72e-07 6.9e-07 4.48e-07 1.08e-06 7.79e-07 5.25e-07 1.86e-06 2.7e-07 7.97e-07 6.23e-07 8.4e-07 1.06e-06 5.66e-07 2.96e-07 2.16e-07 4.57e-07 5.61e-07 4.47e-07 5.22e-07 2.74e-07 1.83e-07 1.54e-07 1.97e-07 1.19e-06 3.5e-07 9.66e-08 2.16e-07 1.27e-07 1.9e-07 4.91e-08 1.7e-07
ENSG00000139433 \N 62178 1.6e-05 2.11e-05 2.65e-06 1.06e-05 3.09e-06 7.21e-06 2.11e-05 3.73e-06 1.8e-05 8.72e-06 2.39e-05 8.87e-06 3.18e-05 6.73e-06 5.16e-06 9.99e-06 8.8e-06 1.41e-05 4.31e-06 4.69e-06 8.17e-06 1.73e-05 1.59e-05 4.52e-06 2.61e-05 5.36e-06 8.52e-06 7.73e-06 1.67e-05 1.2e-05 1.19e-05 1.25e-06 1.68e-06 4.09e-06 7.51e-06 3.8e-06 1.89e-06 2.71e-06 2.84e-06 2.18e-06 1.21e-06 2.08e-05 2.63e-06 3.62e-07 1.84e-06 2.58e-06 2.8e-06 1.17e-06 1.04e-06
ENSG00000139436 \N -53670 2.02e-05 2.41e-05 3.05e-06 1.21e-05 3.38e-06 8.4e-06 2.4e-05 3.86e-06 2.03e-05 9.85e-06 2.74e-05 1.04e-05 3.59e-05 7.98e-06 5.31e-06 1.09e-05 1.02e-05 1.6e-05 5.17e-06 5.22e-06 9.2e-06 2.04e-05 1.81e-05 4.96e-06 2.89e-05 5.73e-06 9.99e-06 8.16e-06 1.9e-05 1.38e-05 1.29e-05 1.41e-06 1.96e-06 4.4e-06 8.54e-06 3.97e-06 2.05e-06 2.76e-06 3.24e-06 2.54e-06 1.52e-06 2.41e-05 2.71e-06 3.73e-07 1.95e-06 2.7e-06 3.25e-06 1.31e-06 1.32e-06
ENSG00000139437 TCHP 42445 2.62e-05 2.83e-05 4.31e-06 1.34e-05 4.43e-06 1.07e-05 3.12e-05 4.65e-06 2.5e-05 1.2e-05 3.26e-05 1.38e-05 4.19e-05 1.02e-05 5.99e-06 1.34e-05 1.3e-05 1.97e-05 6.52e-06 6.02e-06 1.12e-05 2.53e-05 2.31e-05 5.93e-06 3.35e-05 6.66e-06 1.26e-05 9.69e-06 2.43e-05 1.63e-05 1.57e-05 1.61e-06 2.42e-06 5.41e-06 9.49e-06 4.5e-06 2.65e-06 2.98e-06 3.75e-06 2.9e-06 1.67e-06 2.92e-05 3.04e-06 4.21e-07 2.1e-06 3.32e-06 3.62e-06 1.44e-06 1.56e-06
ENSG00000174456 C12orf76 -130915 7.72e-06 9.52e-06 1.04e-06 4.56e-06 2.25e-06 3.43e-06 9.3e-06 1.92e-06 7.68e-06 4.38e-06 1.05e-05 4.84e-06 1.16e-05 3.74e-06 2.01e-06 5.65e-06 3.74e-06 4.1e-06 2.27e-06 2.68e-06 4.39e-06 7.74e-06 5.83e-06 2.01e-06 1.03e-05 2.57e-06 4.85e-06 3.14e-06 6.83e-06 6.66e-06 4.33e-06 9.42e-07 9.22e-07 2.61e-06 3.5e-06 2.04e-06 1.35e-06 1.84e-06 1.36e-06 1.02e-06 7.59e-07 8.98e-06 1.48e-06 2.09e-07 7.51e-07 1.31e-06 9.08e-07 7.1e-07 4.55e-07
ENSG00000189046 \N 849231 2.76e-07 1.3e-07 4.91e-08 2.05e-07 1.03e-07 9.05e-08 1.61e-07 5.75e-08 1.45e-07 5.67e-08 1.57e-07 9.19e-08 1.47e-07 7.13e-08 6.18e-08 7.53e-08 4.12e-08 1.27e-07 6.07e-08 4.92e-08 1.22e-07 1.27e-07 1.45e-07 3.03e-08 1.5e-07 1.14e-07 1.13e-07 9.74e-08 1.12e-07 1.07e-07 1.02e-07 4.69e-08 3.51e-08 8.56e-08 2.97e-08 2.68e-08 5.58e-08 8.17e-08 6.63e-08 4.55e-08 4.94e-08 1.33e-07 3.55e-08 7.39e-09 3.29e-08 1.77e-08 1.19e-07 2.1e-09 4.82e-08
ENSG00000196510 \N -461011 9.47e-07 6.09e-07 1.27e-07 3.81e-07 1.16e-07 3.24e-07 5.76e-07 2.28e-07 4.61e-07 2.82e-07 9.92e-07 4.28e-07 8.6e-07 1.59e-07 3.15e-07 2.23e-07 4.87e-07 4.11e-07 2.57e-07 2.76e-07 2.61e-07 4.31e-07 3.84e-07 1.76e-07 7.94e-07 2.34e-07 4.37e-07 2.83e-07 3.83e-07 6.27e-07 3.56e-07 4.99e-08 4.98e-08 1.73e-07 3.32e-07 3e-07 1.84e-07 1.59e-07 6.58e-08 1.57e-08 8.42e-08 4.55e-07 5.45e-08 1.28e-08 1.89e-07 3.41e-08 1.17e-07 8.88e-08 4.9e-08
ENSG00000204856 FAM216A -526062 7.23e-07 3.23e-07 9.16e-08 3.96e-07 1.07e-07 1.97e-07 4.09e-07 1.4e-07 2.76e-07 2.01e-07 5.29e-07 2.98e-07 5.39e-07 1.07e-07 1.57e-07 1.46e-07 2.11e-07 3.02e-07 1.62e-07 1.53e-07 1.86e-07 2.76e-07 2.77e-07 1.03e-07 4.46e-07 2e-07 2.52e-07 2.01e-07 2.11e-07 3.3e-07 2.11e-07 3.28e-08 5.19e-08 1.21e-07 3.08e-07 1.49e-07 1.11e-07 1.06e-07 5.54e-08 5.12e-08 3.43e-08 2.71e-07 6.3e-08 1.62e-08 1.49e-07 1.25e-08 9.68e-08 3.13e-08 6.15e-08
ENSG00000277299 AC084876.1 -5670 5.17e-05 4.46e-05 8.86e-06 2.03e-05 9.12e-06 2.01e-05 6.15e-05 7.57e-06 5.05e-05 2.65e-05 6.15e-05 2.68e-05 7.22e-05 2.04e-05 1.09e-05 3.27e-05 2.74e-05 3.97e-05 1.26e-05 1.03e-05 2.64e-05 5.39e-05 4.42e-05 1.32e-05 6.47e-05 1.49e-05 2.31e-05 2.1e-05 4.7e-05 3.39e-05 3.18e-05 2.89e-06 5.56e-06 9.71e-06 1.62e-05 8.12e-06 4.8e-06 5.28e-06 7.19e-06 4.37e-06 2.04e-06 4.91e-05 4.96e-06 5.78e-07 4.04e-06 6.36e-06 6.42e-06 2.8e-06 2.23e-06
ENSG00000278993 AC002350.1 -558895 5.74e-07 2.5e-07 7.87e-08 3.43e-07 9.72e-08 1.64e-07 3.44e-07 1.03e-07 2.26e-07 1.5e-07 4.13e-07 2.11e-07 4.11e-07 9.18e-08 1.27e-07 1.14e-07 1.35e-07 2.83e-07 1.27e-07 1.17e-07 1.61e-07 2.3e-07 2.26e-07 5.6e-08 3.55e-07 1.82e-07 2.08e-07 1.67e-07 1.58e-07 2.26e-07 1.88e-07 5.82e-08 5.73e-08 1.24e-07 2.84e-07 1.09e-07 1.1e-07 1.09e-07 5.25e-08 7.5e-08 3.6e-08 2.15e-07 5.51e-08 1.98e-08 1.23e-07 1.81e-08 9.38e-08 2.31e-08 4.97e-08
ENSG00000280426 AC084876.2 -56408 1.86e-05 2.3e-05 2.96e-06 1.15e-05 3.26e-06 7.99e-06 2.29e-05 3.78e-06 1.97e-05 9.53e-06 2.63e-05 9.68e-06 3.48e-05 7.61e-06 5.19e-06 1.03e-05 9.88e-06 1.53e-05 4.73e-06 5.07e-06 8.72e-06 1.97e-05 1.77e-05 4.74e-06 2.77e-05 5.39e-06 9.55e-06 8.03e-06 1.8e-05 1.32e-05 1.29e-05 1.38e-06 1.88e-06 4.26e-06 8.27e-06 3.83e-06 1.97e-06 2.82e-06 3.24e-06 2.42e-06 1.46e-06 2.31e-05 2.7e-06 3.63e-07 1.95e-06 2.77e-06 3.07e-06 1.29e-06 1.3e-06
ENSG00000286220 \N -130967 7.72e-06 9.52e-06 1.04e-06 4.56e-06 2.25e-06 3.43e-06 9.3e-06 1.92e-06 7.68e-06 4.38e-06 1.05e-05 4.84e-06 1.16e-05 3.66e-06 2.01e-06 5.65e-06 3.74e-06 4.1e-06 2.27e-06 2.68e-06 4.39e-06 7.81e-06 5.83e-06 2.01e-06 1.03e-05 2.57e-06 4.85e-06 3.14e-06 6.83e-06 6.66e-06 4.33e-06 9.42e-07 9.22e-07 2.61e-06 3.5e-06 2.04e-06 1.35e-06 1.84e-06 1.36e-06 1.02e-06 7.59e-07 8.83e-06 1.48e-06 2.09e-07 7.51e-07 1.31e-06 9.08e-07 7.1e-07 4.55e-07