Genes within 1Mb (chr12:109825003:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076513 ANKRD13A -174183 eQTL 1.51e-03 0.0348 0.0109 0.0 0.0 0.32
ENSG00000084112 SSH1 967413 eQTL 2.39e-02 -0.0344 0.0152 0.0 0.0 0.32
ENSG00000110906 KCTD10 347644 eQTL 2.14e-02 -0.0425 0.0184 0.0 0.0 0.32
ENSG00000111199 TRPV4 -8398 eQTL 5.66e-22 0.272 0.0276 0.0 0.0 0.32
ENSG00000111229 ARPC3 -625334 eQTL 6.95e-04 0.028 0.00822 0.0 0.0 0.32
ENSG00000111231 GPN3 -644265 eQTL 1.51e-14 0.172 0.022 0.0 0.0 0.32
ENSG00000122986 HVCN1 -879947 eQTL 7.96e-02 -0.0253 0.0144 0.00101 0.0 0.32
ENSG00000139428 MMAB 251423 eQTL 3.41e-03 -0.0613 0.0209 0.00209 0.0 0.32
ENSG00000139433 GLTP -55538 eQTL 1.81e-03 0.0516 0.0165 0.0 0.0 0.32
ENSG00000139437 TCHP -75271 eQTL 1.01e-07 -0.0898 0.0167 0.0 0.0 0.32
ENSG00000151164 RAD9B -676652 eQTL 7.21e-02 -0.0727 0.0404 0.00126 0.0 0.32
ENSG00000204852 TCTN1 -789024 eQTL 4.51e-03 -0.0447 0.0157 0.0 0.0 0.32
ENSG00000204856 FAM216A -643778 eQTL 2.69e-04 0.0786 0.0215 0.0 0.0 0.32


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111199 TRPV4 -8398 3.98e-05 2.79e-05 5.43e-06 1.48e-05 5.05e-06 1.45e-05 3.81e-05 3.82e-06 2.53e-05 1.27e-05 3.26e-05 1.44e-05 4.23e-05 1.14e-05 6.21e-06 1.61e-05 1.44e-05 2.33e-05 6.85e-06 6.05e-06 1.29e-05 2.86e-05 2.63e-05 8.06e-06 3.83e-05 7.14e-06 1.21e-05 1.02e-05 2.71e-05 2.53e-05 1.69e-05 1.58e-06 2.41e-06 6.6e-06 1.08e-05 5.34e-06 3.03e-06 3.17e-06 4.29e-06 3.36e-06 1.76e-06 3.36e-05 3.44e-06 3.57e-07 2.19e-06 3.29e-06 3.88e-06 1.4e-06 1.51e-06
ENSG00000111231 GPN3 -644265 3.71e-07 1.67e-07 6.42e-08 2.31e-07 9.82e-08 7.75e-08 2.16e-07 5.56e-08 1.71e-07 9.35e-08 1.66e-07 1.23e-07 2.55e-07 8.15e-08 5.36e-08 9.01e-08 4.25e-08 2.04e-07 7.29e-08 6.16e-08 1.23e-07 1.76e-07 1.68e-07 3.51e-08 2.17e-07 1.39e-07 1.19e-07 1.26e-07 1.39e-07 1.36e-07 1.22e-07 3.68e-08 4.27e-08 9.8e-08 3.97e-08 3.57e-08 4.54e-08 8.57e-08 6.41e-08 4.24e-08 5.33e-08 1.62e-07 3.13e-08 1.43e-08 3.48e-08 6.53e-09 8.98e-08 2.1e-09 4.55e-08
ENSG00000135093 \N 801914 2.91e-07 1.35e-07 5.03e-08 1.89e-07 9.24e-08 9.48e-08 1.6e-07 5.43e-08 1.45e-07 5.67e-08 1.52e-07 9.19e-08 1.69e-07 7.37e-08 6.12e-08 7.5e-08 4.01e-08 1.44e-07 6.32e-08 4.78e-08 1.25e-07 1.26e-07 1.44e-07 2.91e-08 1.55e-07 1.25e-07 1.07e-07 9.92e-08 1.23e-07 9.49e-08 1.06e-07 3.1e-08 3.59e-08 8.11e-08 5.99e-08 2.95e-08 5.61e-08 8.93e-08 6.37e-08 3.8e-08 5.13e-08 1.46e-07 5.12e-08 1.3e-08 3.42e-08 1.89e-08 1.18e-07 1.89e-09 4.82e-08
ENSG00000139428 MMAB 251423 1.57e-06 1.29e-06 3.06e-07 1.27e-06 3.43e-07 6.36e-07 1.51e-06 4.04e-07 1.68e-06 6.23e-07 2.03e-06 8.59e-07 2.63e-06 3.26e-07 5.42e-07 9.45e-07 1.02e-06 1.05e-06 8.15e-07 5.17e-07 7.96e-07 1.91e-06 1.04e-06 5.59e-07 2.49e-06 7.38e-07 9.48e-07 9.24e-07 1.59e-06 1.29e-06 8.57e-07 2.09e-07 3.16e-07 7.04e-07 5.76e-07 5.22e-07 7.25e-07 2.26e-07 3.93e-07 3.12e-07 2.59e-07 1.95e-06 3.32e-07 4.15e-08 3.1e-07 1.59e-07 2.17e-07 3.8e-08 1.57e-07
ENSG00000139437 TCHP -75271 8.12e-06 9.12e-06 9.77e-07 3.98e-06 1.74e-06 3.53e-06 9.41e-06 1.29e-06 5.86e-06 3.55e-06 8.96e-06 3.9e-06 1.14e-05 3.58e-06 1.29e-06 5.1e-06 3.7e-06 4.4e-06 1.92e-06 2.07e-06 3.2e-06 7.46e-06 5.73e-06 2.01e-06 1.05e-05 2.45e-06 3.64e-06 2.43e-06 6.99e-06 7.58e-06 4.13e-06 4.86e-07 7.36e-07 2.26e-06 2.59e-06 2.06e-06 1.11e-06 9.43e-07 1.09e-06 7.37e-07 7.54e-07 9.19e-06 1.19e-06 1.84e-07 7.45e-07 8.98e-07 1.05e-06 6.84e-07 5.44e-07
ENSG00000274598 \N 990619 2.74e-07 1.19e-07 3.88e-08 1.8e-07 9.01e-08 9.65e-08 1.42e-07 5.19e-08 1.44e-07 4.57e-08 1.62e-07 8.14e-08 1.41e-07 6.56e-08 6e-08 7.37e-08 3.94e-08 1.21e-07 5.39e-08 4.45e-08 1.08e-07 1.27e-07 1.34e-07 3.68e-08 1.32e-07 1.16e-07 1.08e-07 9.36e-08 1.08e-07 1.07e-07 9.64e-08 3.89e-08 3.56e-08 8.49e-08 8.94e-08 3.62e-08 5.05e-08 9.22e-08 7.23e-08 3.55e-08 4.46e-08 1.33e-07 5.27e-08 1.53e-08 5.43e-08 1.83e-08 1.24e-07 3.86e-09 4.88e-08