Genes within 1Mb (chr12:109819699:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076513 ANKRD13A -179487 eQTL 2.43e-03 0.033 0.0109 0.0 0.0 0.327
ENSG00000084112 SSH1 962109 eQTL 2.71e-02 -0.0333 0.0151 0.0 0.0 0.327
ENSG00000110906 KCTD10 342340 eQTL 2.07e-02 -0.0423 0.0182 0.0 0.0 0.327
ENSG00000111199 TRPV4 -13702 eQTL 6.24e-21 0.263 0.0274 0.0 0.0 0.327
ENSG00000111229 ARPC3 -630638 eQTL 1.09e-03 0.0267 0.00815 0.0 0.0 0.327
ENSG00000111231 GPN3 -649569 eQTL 3.65e-14 0.168 0.0219 0.0 0.0 0.327
ENSG00000122986 HVCN1 -885251 eQTL 6.27e-02 -0.0266 0.0143 0.00112 0.0 0.327
ENSG00000139428 MMAB 246119 eQTL 3.77e-03 -0.0601 0.0207 0.00174 0.0 0.327
ENSG00000139433 GLTP -60842 eQTL 7.85e-04 0.055 0.0163 0.0 0.0 0.327
ENSG00000139437 TCHP -80575 eQTL 1.15e-07 -0.0887 0.0166 0.0 0.0 0.327
ENSG00000151164 RAD9B -681956 eQTL 4.45e-02 -0.0805 0.04 0.00155 0.0 0.327
ENSG00000204852 TCTN1 -794328 eQTL 2.07e-03 -0.048 0.0155 0.0 0.0 0.327
ENSG00000204856 FAM216A -649082 eQTL 5.28e-04 0.0742 0.0213 0.0 0.0 0.327


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111199 TRPV4 -13702 1.8e-05 2.1e-05 4.41e-06 1.24e-05 4.07e-06 1e-05 2.88e-05 3.71e-06 1.97e-05 1.01e-05 2.6e-05 1.02e-05 3.63e-05 8.95e-06 5.36e-06 1.2e-05 1.17e-05 1.88e-05 6.52e-06 5.66e-06 1.05e-05 2.16e-05 2.19e-05 8.06e-06 3.23e-05 6.09e-06 8.66e-06 8.92e-06 2.28e-05 2.53e-05 1.29e-05 1.54e-06 2.37e-06 6.69e-06 9.01e-06 5.31e-06 3.13e-06 3.11e-06 4.62e-06 3.24e-06 1.7e-06 2.62e-05 2.64e-06 4.38e-07 2.18e-06 2.98e-06 3.64e-06 1.48e-06 1.55e-06
ENSG00000111231 GPN3 -649569 3.02e-07 1.5e-07 6.15e-08 2.2e-07 9.82e-08 8.37e-08 1.99e-07 5.68e-08 1.59e-07 8.53e-08 1.63e-07 1.2e-07 2.05e-07 8.13e-08 5.36e-08 8.71e-08 4.35e-08 1.72e-07 7.18e-08 5.35e-08 1.18e-07 1.56e-07 1.58e-07 3.49e-08 2.02e-07 1.39e-07 1.19e-07 1.1e-07 1.31e-07 1.05e-07 1.09e-07 4.4e-08 3.29e-08 9.78e-08 3.71e-08 2.68e-08 4.06e-08 8.17e-08 6.5e-08 4.41e-08 6e-08 1.59e-07 4.7e-08 1.43e-08 3.32e-08 1.55e-08 7.92e-08 2.1e-09 4.69e-08
ENSG00000135093 \N 796610 2.67e-07 1.3e-07 4.98e-08 1.82e-07 9.24e-08 9.91e-08 1.61e-07 5.48e-08 1.45e-07 5.67e-08 1.55e-07 9.19e-08 1.52e-07 7.13e-08 6.12e-08 7.5e-08 4.01e-08 1.33e-07 5.97e-08 4.21e-08 1.26e-07 1.24e-07 1.45e-07 2.93e-08 1.55e-07 1.26e-07 1.1e-07 9.74e-08 1.16e-07 1.05e-07 9.92e-08 2.96e-08 3.89e-08 8.11e-08 6.34e-08 3.04e-08 5.59e-08 8.61e-08 6.71e-08 3.8e-08 5.37e-08 1.4e-07 5.2e-08 1.23e-08 3.84e-08 1.86e-08 1.21e-07 1.89e-09 5.01e-08
ENSG00000139428 MMAB 246119 1.24e-06 1.01e-06 2.48e-07 1.16e-06 3.5e-07 5.96e-07 1.63e-06 4.04e-07 1.49e-06 5.98e-07 1.82e-06 7.32e-07 2.29e-06 3e-07 5.62e-07 9.19e-07 9.2e-07 7.36e-07 8.41e-07 6.52e-07 7.95e-07 1.75e-06 8.98e-07 6.25e-07 2.19e-06 6.52e-07 9.18e-07 8.04e-07 1.38e-06 1.26e-06 6.63e-07 2.57e-07 2.02e-07 7.04e-07 5.6e-07 4.42e-07 6.37e-07 2.42e-07 4.94e-07 3.02e-07 3.04e-07 1.58e-06 9.48e-08 9.66e-08 2.83e-07 1.2e-07 2.57e-07 4.79e-08 1.58e-07
ENSG00000139437 TCHP -80575 5.46e-06 5.38e-06 6.55e-07 3.52e-06 1.49e-06 1.57e-06 7.51e-06 1.25e-06 4.56e-06 3.06e-06 7.34e-06 2.9e-06 9.42e-06 1.75e-06 9.59e-07 3.93e-06 2.6e-06 3.71e-06 1.49e-06 1.58e-06 2.73e-06 5.77e-06 4.69e-06 1.92e-06 8.97e-06 2.21e-06 2.65e-06 1.76e-06 5.87e-06 6.64e-06 2.6e-06 4.74e-07 7.75e-07 2.31e-06 1.89e-06 1.38e-06 1.12e-06 5.44e-07 1.08e-06 6.1e-07 8.4e-07 7.87e-06 6.14e-07 1.59e-07 8.28e-07 1.06e-06 1.04e-06 7.43e-07 6.01e-07
ENSG00000274598 \N 985315 2.67e-07 1.16e-07 3.69e-08 1.82e-07 9.01e-08 9.65e-08 1.42e-07 5.2e-08 1.44e-07 4.57e-08 1.62e-07 8.14e-08 1.41e-07 6.38e-08 6e-08 7.37e-08 3.98e-08 1.18e-07 5.36e-08 4.42e-08 1.08e-07 1.23e-07 1.34e-07 3.79e-08 1.32e-07 1.14e-07 1.08e-07 9.36e-08 1.05e-07 1.1e-07 9.91e-08 3.87e-08 3.3e-08 8.49e-08 8.94e-08 3.93e-08 5.02e-08 9.23e-08 6.78e-08 3.55e-08 4.39e-08 1.33e-07 4.52e-08 1.42e-08 5.75e-08 1.83e-08 1.19e-07 3.83e-09 4.81e-08