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Genes within 1Mb (chr12:109683306:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076248 UNG 585732 sc-eQTL 9.90e-01 0.00293 0.224 0.948 gdT L2
ENSG00000076513 ANKRD13A -315880 sc-eQTL 2.56e-01 -0.242 0.213 0.948 gdT L2
ENSG00000076555 ACACB 566711 sc-eQTL 3.00e-01 0.235 0.226 0.948 gdT L2
ENSG00000084112 SSH1 825716 sc-eQTL 9.45e-01 -0.0151 0.219 0.948 gdT L2
ENSG00000110880 CORO1C 951710 sc-eQTL 2.85e-01 0.208 0.194 0.948 gdT L2
ENSG00000110906 KCTD10 205947 sc-eQTL 6.89e-01 -0.0978 0.244 0.948 gdT L2
ENSG00000110921 MVK 110051 sc-eQTL 3.47e-01 -0.199 0.211 0.948 gdT L2
ENSG00000111229 ARPC3 -767116 sc-eQTL 7.46e-01 -0.0528 0.163 0.948 gdT L2
ENSG00000111231 GPN3 -785962 sc-eQTL 8.07e-01 -0.0569 0.233 0.948 gdT L2
ENSG00000111237 VPS29 -818805 sc-eQTL 1.67e-01 -0.334 0.24 0.948 gdT L2
ENSG00000135093 USP30 660217 sc-eQTL 6.80e-04 0.774 0.223 0.948 gdT L2
ENSG00000139428 MMAB 109726 sc-eQTL 3.54e-01 0.22 0.237 0.948 gdT L2
ENSG00000139433 GLTP -197235 sc-eQTL 5.02e-01 -0.166 0.246 0.948 gdT L2
ENSG00000139436 GIT2 -313083 sc-eQTL 9.41e-01 -0.0177 0.238 0.948 gdT L2
ENSG00000139437 TCHP -216958 sc-eQTL 1.89e-02 -0.539 0.227 0.948 gdT L2
ENSG00000151148 UBE3B 205904 sc-eQTL 6.25e-01 -0.115 0.234 0.948 gdT L2
ENSG00000174437 ATP2A2 -597450 sc-eQTL 1.84e-01 -0.291 0.218 0.948 gdT L2
ENSG00000174456 C12orf76 -390328 sc-eQTL 4.34e-01 -0.187 0.238 0.948 gdT L2
ENSG00000189046 ALKBH2 589675 sc-eQTL 8.05e-01 0.0606 0.246 0.948 gdT L2
ENSG00000196510 ANAPC7 -720424 sc-eQTL 7.80e-01 0.0641 0.229 0.948 gdT L2
ENSG00000196850 PPTC7 -900012 sc-eQTL 8.16e-01 -0.0529 0.227 0.948 gdT L2
ENSG00000204852 TCTN1 -930721 sc-eQTL 8.38e-02 0.409 0.235 0.948 gdT L2
ENSG00000204856 FAM216A -785109 sc-eQTL 1.86e-01 -0.308 0.232 0.948 gdT L2
ENSG00000256262 USP30-AS1 629354 sc-eQTL 3.20e-01 0.224 0.224 0.948 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111199 TRPV4 -150095 eQTL 0.00107 0.205 0.0624 0.0 0.0 0.0505
ENSG00000111237 VPS29 -818811 eQTL 0.025 0.0601 0.0268 0.0 0.0 0.0505
ENSG00000204856 FAM216A -785475 eQTL 1.36e-02 0.116 0.0468 0.0 0.0 0.0505

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000110880 \N 951710 2.69e-07 1.16e-07 3.71e-08 1.82e-07 9.21e-08 9.65e-08 1.44e-07 5.19e-08 1.44e-07 4.57e-08 1.62e-07 8.36e-08 1.41e-07 6.56e-08 5.99e-08 7.17e-08 3.94e-08 1.18e-07 5.36e-08 4.45e-08 1.05e-07 1.23e-07 1.32e-07 3.79e-08 1.37e-07 1.16e-07 1.08e-07 9.32e-08 1.05e-07 1.1e-07 9.91e-08 3.65e-08 3.28e-08 8.68e-08 8.76e-08 3.93e-08 5.01e-08 9.22e-08 7.23e-08 3.55e-08 4.36e-08 1.31e-07 4.33e-08 3.23e-08 5.43e-08 1.83e-08 1.22e-07 3.83e-09 4.85e-08
ENSG00000111199 TRPV4 -150095 3.47e-06 3.09e-06 3.38e-07 1.98e-06 6.15e-07 7.26e-07 2.26e-06 7.35e-07 2.28e-06 1.06e-06 2.57e-06 1.53e-06 3.92e-06 1.41e-06 9.13e-07 1.69e-06 1.46e-06 2.22e-06 1.33e-06 1.52e-06 1.14e-06 3.12e-06 2.7e-06 1.22e-06 4.05e-06 1.21e-06 1.36e-06 1.78e-06 2.71e-06 2.23e-06 1.96e-06 3.97e-07 5.68e-07 1.28e-06 1.47e-06 9.47e-07 7.76e-07 4.57e-07 1.18e-06 3.79e-07 2.11e-07 3.37e-06 4.58e-07 1.81e-07 3.04e-07 3.13e-07 8.54e-07 2.45e-07 2.01e-07
ENSG00000241680 \N -777682 2.76e-07 1.27e-07 4.69e-08 1.83e-07 9.79e-08 9.91e-08 1.6e-07 5.43e-08 1.45e-07 5.42e-08 1.55e-07 1.01e-07 1.52e-07 7.13e-08 6.12e-08 7.36e-08 4.09e-08 1.33e-07 5.97e-08 4.3e-08 1.19e-07 1.24e-07 1.45e-07 2.93e-08 1.55e-07 1.21e-07 1.07e-07 9.61e-08 1.16e-07 1.07e-07 9.92e-08 3.54e-08 3.66e-08 8.11e-08 5.64e-08 3.53e-08 5.31e-08 8.71e-08 6.37e-08 3.86e-08 5.44e-08 1.33e-07 5.21e-08 1.13e-08 3.42e-08 1.86e-08 1.18e-07 1.88e-09 4.88e-08