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Genes within 1Mb (chr12:108459634:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 -101766 sc-eQTL 4.34e-01 0.175 0.224 0.052 CD4_CTL L2
ENSG00000076248 UNG -637940 sc-eQTL 7.61e-01 0.0612 0.201 0.052 CD4_CTL L2
ENSG00000076555 ACACB -656961 sc-eQTL 3.69e-02 -0.396 0.189 0.052 CD4_CTL L2
ENSG00000084112 SSH1 -397956 sc-eQTL 3.04e-01 -0.211 0.205 0.052 CD4_CTL L2
ENSG00000110851 PRDM4 698362 sc-eQTL 2.21e-01 -0.259 0.212 0.052 CD4_CTL L2
ENSG00000110876 SELPLG -174325 sc-eQTL 3.78e-01 -0.127 0.144 0.052 CD4_CTL L2
ENSG00000135093 USP30 -563455 sc-eQTL 4.99e-01 0.139 0.205 0.052 CD4_CTL L2
ENSG00000136003 ISCU -102948 sc-eQTL 8.54e-01 -0.0345 0.188 0.052 CD4_CTL L2
ENSG00000136045 PWP1 773835 sc-eQTL 2.23e-02 -0.484 0.21 0.052 CD4_CTL L2
ENSG00000189046 ALKBH2 -633997 sc-eQTL 7.69e-01 -0.0625 0.213 0.052 CD4_CTL L2
ENSG00000198855 FICD -55643 sc-eQTL 3.92e-02 -0.396 0.191 0.052 CD4_CTL L2
ENSG00000256139 AC007637.1 -651584 sc-eQTL 4.11e-02 -0.33 0.16 0.052 CD4_CTL L2
ENSG00000256262 USP30-AS1 -594318 sc-eQTL 5.39e-01 0.131 0.213 0.052 CD4_CTL L2
ENSG00000075856 SART3 -101766 sc-eQTL 2.29e-01 -0.274 0.227 0.053 CD8_TCM L2
ENSG00000076248 UNG -637940 sc-eQTL 8.70e-01 -0.0327 0.2 0.053 CD8_TCM L2
ENSG00000076555 ACACB -656961 sc-eQTL 7.41e-02 -0.369 0.206 0.053 CD8_TCM L2
ENSG00000084112 SSH1 -397956 sc-eQTL 1.20e-01 -0.334 0.214 0.053 CD8_TCM L2
ENSG00000110851 PRDM4 698362 sc-eQTL 4.73e-01 -0.143 0.199 0.053 CD8_TCM L2
ENSG00000110876 SELPLG -174325 sc-eQTL 5.45e-01 0.0781 0.129 0.053 CD8_TCM L2
ENSG00000110880 CORO1C -271962 sc-eQTL 1.54e-01 -0.272 0.19 0.053 CD8_TCM L2
ENSG00000135093 USP30 -563455 sc-eQTL 4.57e-01 0.158 0.212 0.053 CD8_TCM L2
ENSG00000136003 ISCU -102948 sc-eQTL 2.03e-01 0.26 0.203 0.053 CD8_TCM L2
ENSG00000136045 PWP1 773835 sc-eQTL 9.78e-01 0.00588 0.215 0.053 CD8_TCM L2
ENSG00000174600 CMKLR1 120317 sc-eQTL 7.11e-01 -0.0267 0.072 0.053 CD8_TCM L2
ENSG00000189046 ALKBH2 -633997 sc-eQTL 1.01e-01 -0.349 0.211 0.053 CD8_TCM L2
ENSG00000198855 FICD -55643 sc-eQTL 5.15e-01 -0.133 0.203 0.053 CD8_TCM L2
ENSG00000256262 USP30-AS1 -594318 sc-eQTL 7.69e-01 0.0589 0.201 0.053 CD8_TCM L2
ENSG00000075856 SART3 -101766 sc-eQTL 4.87e-01 0.188 0.27 0.052 PB L2
ENSG00000076248 UNG -637940 sc-eQTL 5.94e-01 0.13 0.244 0.052 PB L2
ENSG00000076555 ACACB -656961 sc-eQTL 2.77e-01 -0.247 0.226 0.052 PB L2
ENSG00000084112 SSH1 -397956 sc-eQTL 4.80e-01 -0.178 0.252 0.052 PB L2
ENSG00000110851 PRDM4 698362 sc-eQTL 9.47e-01 0.0126 0.19 0.052 PB L2
ENSG00000110876 SELPLG -174325 sc-eQTL 6.19e-01 -0.0824 0.165 0.052 PB L2
ENSG00000110880 CORO1C -271962 sc-eQTL 3.76e-02 -0.511 0.243 0.052 PB L2
ENSG00000135093 USP30 -563455 sc-eQTL 4.59e-01 0.182 0.245 0.052 PB L2
ENSG00000136003 ISCU -102948 sc-eQTL 9.71e-01 0.00677 0.187 0.052 PB L2
ENSG00000136045 PWP1 773835 sc-eQTL 3.63e-01 0.207 0.226 0.052 PB L2
ENSG00000189046 ALKBH2 -633997 sc-eQTL 3.66e-01 0.233 0.257 0.052 PB L2
ENSG00000198855 FICD -55643 sc-eQTL 6.42e-01 -0.0862 0.185 0.052 PB L2
ENSG00000256262 USP30-AS1 -594318 sc-eQTL 9.79e-01 -0.00627 0.24 0.052 PB L2
ENSG00000257221 AC007569.1 -169034 sc-eQTL 1.15e-01 -0.353 0.222 0.052 PB L2
ENSG00000075856 SART3 -101766 sc-eQTL 5.93e-01 0.115 0.214 0.054 pDC L2
ENSG00000076248 UNG -637940 sc-eQTL 2.71e-01 -0.22 0.199 0.054 pDC L2
ENSG00000076555 ACACB -656961 sc-eQTL 6.89e-01 -0.0825 0.206 0.054 pDC L2
ENSG00000084112 SSH1 -397956 sc-eQTL 3.98e-02 -0.443 0.213 0.054 pDC L2
ENSG00000110851 PRDM4 698362 sc-eQTL 2.05e-02 0.552 0.236 0.054 pDC L2
ENSG00000110876 SELPLG -174325 sc-eQTL 8.13e-01 -0.0339 0.143 0.054 pDC L2
ENSG00000110880 CORO1C -271962 sc-eQTL 2.04e-01 0.199 0.156 0.054 pDC L2
ENSG00000135093 USP30 -563455 sc-eQTL 6.31e-01 0.102 0.212 0.054 pDC L2
ENSG00000136003 ISCU -102948 sc-eQTL 7.55e-01 -0.056 0.179 0.054 pDC L2
ENSG00000136045 PWP1 773835 sc-eQTL 1.91e-02 -0.493 0.208 0.054 pDC L2
ENSG00000174600 CMKLR1 120317 sc-eQTL 1.97e-01 -0.189 0.146 0.054 pDC L2
ENSG00000189046 ALKBH2 -633997 sc-eQTL 9.57e-01 -0.0113 0.206 0.054 pDC L2
ENSG00000198855 FICD -55643 sc-eQTL 7.64e-01 -0.0619 0.206 0.054 pDC L2
ENSG00000256262 USP30-AS1 -594318 sc-eQTL 9.50e-01 -0.0121 0.19 0.054 pDC L2
ENSG00000257221 AC007569.1 -169034 sc-eQTL 4.32e-01 0.158 0.2 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000075856 SART3 -101766 eQTL 0.0308 0.084 0.0388 0.0 0.0 0.0604
ENSG00000136003 ISCU -102967 eQTL 1.58e-09 0.306 0.0502 0.0 0.0 0.0604

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000075856 SART3 -101766 4.74e-06 4.79e-06 6.71e-07 2.79e-06 1.62e-06 1.63e-06 4.66e-06 1.05e-06 5.16e-06 2.41e-06 5.21e-06 3.54e-06 7.36e-06 2.49e-06 1.43e-06 3.81e-06 1.78e-06 3.71e-06 1.55e-06 1.15e-06 3.04e-06 4.93e-06 4.58e-06 1.73e-06 6.39e-06 1.95e-06 2.49e-06 1.82e-06 4.44e-06 4.58e-06 2.71e-06 4.18e-07 7.03e-07 1.96e-06 2.26e-06 1.18e-06 1.04e-06 4.39e-07 8.67e-07 5.64e-07 8.36e-07 5.71e-06 3.83e-07 1.58e-07 7.17e-07 9.32e-07 1.13e-06 7.21e-07 5.44e-07
ENSG00000076555 \N -656961 3.27e-07 1.59e-07 6.86e-08 2.26e-07 1.07e-07 7.75e-08 2.5e-07 6.2e-08 1.89e-07 1.05e-07 1.86e-07 1.48e-07 2.38e-07 8.15e-08 6.12e-08 9.35e-08 5.42e-08 2.15e-07 7.42e-08 6.16e-08 1.23e-07 1.81e-07 1.75e-07 4.17e-08 2.37e-07 1.65e-07 1.31e-07 1.26e-07 1.34e-07 1.36e-07 1.22e-07 4.4e-08 4.37e-08 9.72e-08 5.16e-08 3.18e-08 3.7e-08 7.49e-08 6.35e-08 6.07e-08 5.1e-08 1.6e-07 3.55e-08 1.43e-08 3.48e-08 1.01e-08 7.13e-08 2.07e-09 4.67e-08
ENSG00000136003 ISCU -102967 4.59e-06 4.81e-06 6.91e-07 2.65e-06 1.63e-06 1.69e-06 4.6e-06 1.07e-06 5.12e-06 2.43e-06 5.26e-06 3.43e-06 7.12e-06 2.39e-06 1.49e-06 3.77e-06 1.81e-06 3.61e-06 1.55e-06 1.15e-06 3.07e-06 4.95e-06 4.61e-06 1.68e-06 6.48e-06 2.01e-06 2.53e-06 1.77e-06 4.51e-06 4.4e-06 2.81e-06 4.02e-07 6.68e-07 1.9e-06 2.24e-06 1.16e-06 9.95e-07 4.56e-07 8.52e-07 5.31e-07 8.05e-07 5.74e-06 3.65e-07 1.59e-07 7.66e-07 8.63e-07 1.13e-06 6.6e-07 5.13e-07