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Genes within 1Mb (chr1:64746160:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -321594 sc-eQTL 3.94e-01 -0.0417 0.0488 0.496 B L1
ENSG00000213625 LEPROT -674427 sc-eQTL 7.13e-01 0.023 0.0625 0.496 B L1
ENSG00000158966 CACHD1 276031 sc-eQTL 3.05e-01 0.048 0.0466 0.496 CD4T L1
ENSG00000162434 JAK1 -321594 sc-eQTL 6.44e-01 0.0227 0.049 0.496 CD4T L1
ENSG00000213625 LEPROT -674427 sc-eQTL 5.56e-01 0.0452 0.0765 0.496 CD4T L1
ENSG00000116678 LEPR -674492 sc-eQTL 6.00e-01 -0.0424 0.0808 0.496 CD8T L1
ENSG00000158966 CACHD1 276031 sc-eQTL 2.83e-01 -0.0427 0.0397 0.496 CD8T L1
ENSG00000162434 JAK1 -321594 sc-eQTL 4.51e-01 -0.0473 0.0626 0.496 CD8T L1
ENSG00000213625 LEPROT -674427 sc-eQTL 7.59e-01 0.0255 0.0831 0.496 CD8T L1
ENSG00000116678 LEPR -674492 sc-eQTL 3.78e-01 -0.071 0.0804 0.495 DC L1
ENSG00000162433 AK4 -401389 sc-eQTL 7.95e-02 -0.118 0.0672 0.495 DC L1
ENSG00000162434 JAK1 -321594 sc-eQTL 5.49e-01 -0.0338 0.0563 0.495 DC L1
ENSG00000162437 RAVER2 1065 sc-eQTL 9.21e-02 -0.121 0.0716 0.495 DC L1
ENSG00000213625 LEPROT -674427 sc-eQTL 3.77e-02 -0.165 0.079 0.495 DC L1
ENSG00000285079 AL513493.1 -957802 sc-eQTL 2.84e-01 -0.0461 0.0429 0.495 DC L1
ENSG00000116678 LEPR -674492 sc-eQTL 7.15e-01 -0.0289 0.0792 0.496 Mono L1
ENSG00000162433 AK4 -401389 sc-eQTL 9.49e-02 -0.121 0.072 0.496 Mono L1
ENSG00000162434 JAK1 -321594 sc-eQTL 4.44e-01 -0.0396 0.0516 0.496 Mono L1
ENSG00000213625 LEPROT -674427 sc-eQTL 1.74e-01 0.0696 0.051 0.496 Mono L1
ENSG00000116678 LEPR -674492 sc-eQTL 8.30e-01 0.0168 0.0781 0.496 NK L1
ENSG00000162434 JAK1 -321594 sc-eQTL 3.52e-02 0.0774 0.0365 0.496 NK L1
ENSG00000213625 LEPROT -674427 sc-eQTL 5.62e-01 -0.0489 0.0841 0.496 NK L1
ENSG00000162434 JAK1 -321594 sc-eQTL 3.30e-01 0.0525 0.0538 0.496 Other_T L1
ENSG00000162437 RAVER2 1065 sc-eQTL 4.71e-03 -0.22 0.0768 0.496 Other_T L1
ENSG00000213625 LEPROT -674427 sc-eQTL 9.45e-01 -0.0058 0.0846 0.496 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -321594 sc-eQTL 2.75e-01 0.0921 0.0842 0.495 B_Activated L2
ENSG00000213625 LEPROT -674427 sc-eQTL 9.88e-01 0.00132 0.0883 0.495 B_Activated L2
ENSG00000162434 JAK1 -321594 sc-eQTL 2.57e-01 -0.0798 0.0702 0.498 B_Intermediate L2
ENSG00000213625 LEPROT -674427 sc-eQTL 8.05e-01 -0.0204 0.0825 0.498 B_Intermediate L2
ENSG00000162434 JAK1 -321594 sc-eQTL 2.95e-01 0.074 0.0705 0.5 B_Memory L2
ENSG00000213625 LEPROT -674427 sc-eQTL 1.95e-01 0.106 0.0819 0.5 B_Memory L2
ENSG00000162434 JAK1 -321594 sc-eQTL 9.05e-02 -0.105 0.0619 0.496 B_Naive1 L2
ENSG00000213625 LEPROT -674427 sc-eQTL 6.16e-01 -0.0408 0.0812 0.496 B_Naive1 L2
ENSG00000162434 JAK1 -321594 sc-eQTL 5.01e-01 0.0447 0.0662 0.498 B_Naive2 L2
ENSG00000213625 LEPROT -674427 sc-eQTL 8.10e-01 0.0193 0.0799 0.498 B_Naive2 L2
ENSG00000158966 CACHD1 276031 sc-eQTL 3.67e-01 -0.028 0.0309 0.498 CD4_CTL L2
ENSG00000162434 JAK1 -321594 sc-eQTL 3.85e-01 -0.0664 0.0763 0.498 CD4_CTL L2
ENSG00000213625 LEPROT -674427 sc-eQTL 5.53e-01 -0.0521 0.0878 0.498 CD4_CTL L2
ENSG00000158966 CACHD1 276031 sc-eQTL 3.39e-01 0.0447 0.0466 0.496 CD4_Naive L2
ENSG00000162434 JAK1 -321594 sc-eQTL 2.99e-01 0.0494 0.0475 0.496 CD4_Naive L2
ENSG00000213625 LEPROT -674427 sc-eQTL 8.79e-01 0.0118 0.0773 0.496 CD4_Naive L2
ENSG00000158966 CACHD1 276031 sc-eQTL 8.35e-01 -0.0139 0.0667 0.496 CD4_TCM L2
ENSG00000162434 JAK1 -321594 sc-eQTL 8.58e-01 0.00979 0.0546 0.496 CD4_TCM L2
ENSG00000213625 LEPROT -674427 sc-eQTL 4.51e-01 0.0597 0.0791 0.496 CD4_TCM L2
ENSG00000158966 CACHD1 276031 sc-eQTL 1.67e-01 -0.0695 0.0501 0.496 CD4_TEM L2
ENSG00000162434 JAK1 -321594 sc-eQTL 3.02e-01 -0.074 0.0714 0.496 CD4_TEM L2
ENSG00000213625 LEPROT -674427 sc-eQTL 8.79e-01 -0.0129 0.085 0.496 CD4_TEM L2
ENSG00000116678 LEPR -674492 sc-eQTL 3.76e-01 -0.0706 0.0796 0.496 CD8_CTL L2
ENSG00000158966 CACHD1 276031 sc-eQTL 3.71e-01 -0.0321 0.0358 0.496 CD8_CTL L2
ENSG00000162434 JAK1 -321594 sc-eQTL 1.20e-01 -0.104 0.0665 0.496 CD8_CTL L2
ENSG00000213625 LEPROT -674427 sc-eQTL 7.77e-01 0.0232 0.0818 0.496 CD8_CTL L2
ENSG00000116678 LEPR -674492 sc-eQTL 3.90e-01 0.0692 0.0804 0.496 CD8_Naive L2
ENSG00000158966 CACHD1 276031 sc-eQTL 2.66e-01 -0.0621 0.0556 0.496 CD8_Naive L2
ENSG00000162434 JAK1 -321594 sc-eQTL 5.46e-01 -0.0405 0.0671 0.496 CD8_Naive L2
ENSG00000213625 LEPROT -674427 sc-eQTL 2.24e-01 -0.0999 0.082 0.496 CD8_Naive L2
ENSG00000116678 LEPR -674492 sc-eQTL 4.43e-01 -0.0618 0.0805 0.495 CD8_TCM L2
ENSG00000158966 CACHD1 276031 sc-eQTL 2.79e-01 -0.0472 0.0434 0.495 CD8_TCM L2
ENSG00000162434 JAK1 -321594 sc-eQTL 2.75e-01 -0.0764 0.0698 0.495 CD8_TCM L2
ENSG00000213625 LEPROT -674427 sc-eQTL 1.81e-01 0.117 0.087 0.495 CD8_TCM L2
ENSG00000116678 LEPR -674492 sc-eQTL 7.21e-01 -0.0266 0.0744 0.509 CD8_TEM L2
ENSG00000158966 CACHD1 276031 sc-eQTL 9.68e-01 0.000717 0.0178 0.509 CD8_TEM L2
ENSG00000162434 JAK1 -321594 sc-eQTL 3.33e-01 0.0815 0.084 0.509 CD8_TEM L2
ENSG00000213625 LEPROT -674427 sc-eQTL 1.95e-01 0.112 0.0864 0.509 CD8_TEM L2
ENSG00000162434 JAK1 -321594 sc-eQTL 7.54e-01 -0.0226 0.0721 0.498 MAIT L2
ENSG00000162437 RAVER2 1065 sc-eQTL 1.76e-01 -0.104 0.0765 0.498 MAIT L2
ENSG00000213625 LEPROT -674427 sc-eQTL 9.89e-01 0.00115 0.083 0.498 MAIT L2
ENSG00000116678 LEPR -674492 sc-eQTL 7.05e-01 -0.0296 0.078 0.489 NK_CD56bright L2
ENSG00000162434 JAK1 -321594 sc-eQTL 4.05e-01 0.0445 0.0534 0.489 NK_CD56bright L2
ENSG00000213625 LEPROT -674427 sc-eQTL 4.22e-01 -0.0705 0.0876 0.489 NK_CD56bright L2
ENSG00000116678 LEPR -674492 sc-eQTL 7.29e-01 -0.0288 0.0828 0.496 NK_CD56dim L2
ENSG00000162434 JAK1 -321594 sc-eQTL 2.94e-02 0.0938 0.0428 0.496 NK_CD56dim L2
ENSG00000213625 LEPROT -674427 sc-eQTL 3.00e-01 -0.0908 0.0873 0.496 NK_CD56dim L2
ENSG00000116678 LEPR -674492 sc-eQTL 7.72e-01 -0.0215 0.0743 0.498 NK_HLA L2
ENSG00000162434 JAK1 -321594 sc-eQTL 5.32e-01 0.0362 0.0578 0.498 NK_HLA L2
ENSG00000213625 LEPROT -674427 sc-eQTL 4.78e-01 0.0636 0.0896 0.498 NK_HLA L2
ENSG00000116678 LEPR -674492 sc-eQTL 6.59e-01 0.0352 0.0795 0.496 NK_cytokine L2
ENSG00000162434 JAK1 -321594 sc-eQTL 1.19e-01 0.0721 0.046 0.496 NK_cytokine L2
ENSG00000213625 LEPROT -674427 sc-eQTL 2.59e-01 -0.0949 0.0839 0.496 NK_cytokine L2
ENSG00000162434 JAK1 -321594 sc-eQTL 1.68e-01 0.105 0.0755 0.47 PB L2
ENSG00000213625 LEPROT -674427 sc-eQTL 2.14e-01 0.132 0.106 0.47 PB L2
ENSG00000162434 JAK1 -321594 sc-eQTL 1.33e-02 0.134 0.0538 0.491 Pro_T L2
ENSG00000162437 RAVER2 1065 sc-eQTL 8.55e-01 0.0132 0.0721 0.491 Pro_T L2
ENSG00000213625 LEPROT -674427 sc-eQTL 6.34e-01 -0.0406 0.085 0.491 Pro_T L2
ENSG00000158966 CACHD1 276031 sc-eQTL 9.87e-01 0.001 0.0637 0.496 Treg L2
ENSG00000162434 JAK1 -321594 sc-eQTL 9.32e-01 -0.00583 0.0679 0.496 Treg L2
ENSG00000213625 LEPROT -674427 sc-eQTL 2.39e-01 0.104 0.0877 0.496 Treg L2
ENSG00000116678 LEPR -674492 sc-eQTL 3.78e-01 -0.0741 0.0838 0.485 cDC L2
ENSG00000162433 AK4 -401389 sc-eQTL 3.94e-01 -0.0633 0.0741 0.485 cDC L2
ENSG00000162434 JAK1 -321594 sc-eQTL 5.09e-01 -0.0458 0.0692 0.485 cDC L2
ENSG00000162437 RAVER2 1065 sc-eQTL 8.74e-02 -0.13 0.0755 0.485 cDC L2
ENSG00000213625 LEPROT -674427 sc-eQTL 1.74e-01 -0.115 0.084 0.485 cDC L2
ENSG00000285079 AL513493.1 -957802 sc-eQTL 3.55e-01 0.0281 0.0303 0.485 cDC L2
ENSG00000116678 LEPR -674492 sc-eQTL 9.85e-01 -0.00149 0.0806 0.496 cMono_IL1B L2
ENSG00000162433 AK4 -401389 sc-eQTL 1.44e-01 -0.108 0.0738 0.496 cMono_IL1B L2
ENSG00000162434 JAK1 -321594 sc-eQTL 6.85e-02 -0.123 0.0669 0.496 cMono_IL1B L2
ENSG00000213625 LEPROT -674427 sc-eQTL 4.35e-02 0.11 0.054 0.496 cMono_IL1B L2
ENSG00000116678 LEPR -674492 sc-eQTL 3.56e-01 -0.0733 0.0792 0.496 cMono_S100A L2
ENSG00000162433 AK4 -401389 sc-eQTL 3.93e-01 -0.0643 0.0751 0.496 cMono_S100A L2
ENSG00000162434 JAK1 -321594 sc-eQTL 9.99e-01 4.89e-05 0.0694 0.496 cMono_S100A L2
ENSG00000213625 LEPROT -674427 sc-eQTL 3.92e-01 -0.0556 0.0649 0.496 cMono_S100A L2
ENSG00000162434 JAK1 -321594 sc-eQTL 5.09e-01 -0.064 0.0968 0.509 gdT L2
ENSG00000162437 RAVER2 1065 sc-eQTL 1.55e-01 -0.121 0.0847 0.509 gdT L2
ENSG00000213625 LEPROT -674427 sc-eQTL 1.61e-01 -0.143 0.102 0.509 gdT L2
ENSG00000116678 LEPR -674492 sc-eQTL 2.69e-01 0.0871 0.0785 0.496 intMono L2
ENSG00000162433 AK4 -401389 sc-eQTL 6.19e-01 -0.0369 0.0741 0.496 intMono L2
ENSG00000162434 JAK1 -321594 sc-eQTL 8.53e-01 0.0127 0.0686 0.496 intMono L2
ENSG00000213625 LEPROT -674427 sc-eQTL 1.63e-01 0.092 0.0658 0.496 intMono L2
ENSG00000116678 LEPR -674492 sc-eQTL 9.02e-01 -0.00969 0.079 0.5 ncMono L2
ENSG00000162433 AK4 -401389 sc-eQTL 9.12e-01 0.00779 0.0704 0.5 ncMono L2
ENSG00000162434 JAK1 -321594 sc-eQTL 5.58e-01 0.0334 0.0569 0.5 ncMono L2
ENSG00000213625 LEPROT -674427 sc-eQTL 5.87e-01 0.0439 0.0808 0.5 ncMono L2
ENSG00000116678 LEPR -674492 sc-eQTL 5.41e-01 -0.0526 0.0857 0.514 pDC L2
ENSG00000162433 AK4 -401389 sc-eQTL 1.30e-01 0.0846 0.0555 0.514 pDC L2
ENSG00000162434 JAK1 -321594 sc-eQTL 9.89e-01 -0.00103 0.0747 0.514 pDC L2
ENSG00000162437 RAVER2 1065 sc-eQTL 3.56e-01 -0.0777 0.084 0.514 pDC L2
ENSG00000213625 LEPROT -674427 sc-eQTL 6.73e-02 -0.169 0.0917 0.514 pDC L2
ENSG00000285079 AL513493.1 -957802 sc-eQTL 1.43e-01 -0.102 0.0695 0.514 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -321594 sc-eQTL 9.50e-01 0.00393 0.0625 0.496 B_Memory LOneK1K
ENSG00000213625 LEPROT -674427 sc-eQTL 3.49e-01 0.0752 0.0801 0.496 B_Memory LOneK1K
ENSG00000162434 JAK1 -321594 sc-eQTL 2.12e-01 -0.075 0.0599 0.496 B_Naive LOneK1K
ENSG00000213625 LEPROT -674427 sc-eQTL 7.90e-01 -0.0203 0.076 0.496 B_Naive LOneK1K
ENSG00000116678 LEPR -674492 sc-eQTL 6.16e-01 -0.0394 0.0784 0.496 CD14_Mono LOneK1K
ENSG00000162433 AK4 -401389 sc-eQTL 9.88e-02 -0.124 0.0745 0.496 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -321594 sc-eQTL 1.28e-01 -0.0955 0.0624 0.496 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -674427 sc-eQTL 4.12e-01 0.0432 0.0525 0.496 CD14_Mono LOneK1K
ENSG00000116678 LEPR -674492 sc-eQTL 9.82e-01 0.00181 0.0795 0.498 CD16_Mono LOneK1K
ENSG00000162433 AK4 -401389 sc-eQTL 5.40e-01 0.0441 0.0719 0.498 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -321594 sc-eQTL 5.06e-01 0.0322 0.0484 0.498 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -674427 sc-eQTL 6.96e-02 0.122 0.067 0.498 CD16_Mono LOneK1K
ENSG00000116678 LEPR -674492 sc-eQTL 9.98e-01 -0.000169 0.0805 0.496 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -321594 sc-eQTL 5.40e-02 0.0725 0.0374 0.496 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -674427 sc-eQTL 3.71e-01 -0.0747 0.0833 0.496 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162434 JAK1 -220389 eQTL 5.44e-06 0.0653 0.0143 0.0 0.0 0.5
ENSG00000162437 RAVER2 1065 eQTL 1.92e-05 -0.0925 0.0215 0.0 0.0 0.5

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -220389 4e-06 5.08e-06 5.92e-07 2.84e-06 1.72e-06 1.27e-06 4.23e-06 9.6e-07 4.8e-06 1.91e-06 7.6e-06 3.46e-06 7.2e-06 2.17e-06 1.03e-06 2.07e-06 1.77e-06 2.96e-06 1.63e-06 1.58e-06 3.09e-06 4.72e-06 3.8e-06 1.39e-06 4.77e-06 1.21e-06 2e-06 1.78e-06 3.82e-06 3.62e-06 2.85e-06 4.2e-07 7.5e-07 1.59e-06 1.96e-06 9.77e-07 1.09e-06 4.49e-07 8.68e-07 3.28e-07 3.05e-07 5.27e-06 5.26e-07 1.95e-07 4.2e-07 1.02e-06 8.3e-07 3.34e-07 3.74e-07
ENSG00000162437 RAVER2 1065 7.88e-05 7.33e-05 1.44e-05 2.54e-05 1.37e-05 2.84e-05 9.47e-05 9.91e-06 7.05e-05 3.77e-05 9.7e-05 3.58e-05 0.000113 3.61e-05 1.54e-05 5.11e-05 4.08e-05 5.69e-05 1.81e-05 1.64e-05 3.51e-05 7.88e-05 6.98e-05 2.02e-05 9.04e-05 2.14e-05 3.4e-05 3.07e-05 7.73e-05 5.68e-05 4.32e-05 3.79e-06 5.96e-06 1.41e-05 2.03e-05 1.13e-05 6.56e-06 7.11e-06 1.05e-05 5.41e-06 2.75e-06 7.99e-05 8.9e-06 9.15e-07 6.78e-06 9.65e-06 9.21e-06 3.82e-06 2.89e-06
ENSG00000233877 \N -195819 4.74e-06 6.3e-06 1.3e-06 3.32e-06 2.11e-06 1.6e-06 7.23e-06 1.18e-06 4.83e-06 2.48e-06 9.41e-06 3.37e-06 7.57e-06 3.66e-06 1.86e-06 3.38e-06 1.92e-06 3.93e-06 2.26e-06 2.52e-06 2.51e-06 5.63e-06 4.85e-06 1.96e-06 6.47e-06 1.58e-06 2.45e-06 2.43e-06 4.53e-06 4.43e-06 3.4e-06 4.84e-07 4.91e-07 1.71e-06 2.03e-06 1.13e-06 1.11e-06 4.08e-07 9.23e-07 3.58e-07 2.38e-07 6.66e-06 8.75e-07 1.6e-07 5.77e-07 9.29e-07 9.94e-07 6.92e-07 5.28e-07