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Genes within 1Mb (chr1:63313120:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -280291 sc-eQTL 2.05e-01 0.101 0.0792 0.434 B L1
ENSG00000088035 ALG6 -54455 sc-eQTL 1.90e-01 0.108 0.0821 0.434 B L1
ENSG00000116641 DOCK7 624734 sc-eQTL 7.18e-01 0.0298 0.0824 0.434 B L1
ENSG00000125703 ATG4C 528988 sc-eQTL 9.45e-01 0.00396 0.0573 0.434 B L1
ENSG00000142856 ITGB3BP -280601 sc-eQTL 3.80e-03 0.261 0.0893 0.434 B L1
ENSG00000162607 USP1 876823 sc-eQTL 3.53e-01 0.0735 0.0789 0.434 B L1
ENSG00000203965 EFCAB7 -210252 sc-eQTL 1.08e-01 0.15 0.0928 0.434 B L1
ENSG00000079739 PGM1 -280291 sc-eQTL 8.53e-01 0.0127 0.0686 0.434 CD4T L1
ENSG00000088035 ALG6 -54455 sc-eQTL 1.96e-01 -0.0978 0.0754 0.434 CD4T L1
ENSG00000116641 DOCK7 624734 sc-eQTL 4.54e-01 0.0574 0.0766 0.434 CD4T L1
ENSG00000125703 ATG4C 528988 sc-eQTL 6.18e-01 0.0309 0.0619 0.434 CD4T L1
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.08e-02 0.223 0.0865 0.434 CD4T L1
ENSG00000162607 USP1 876823 sc-eQTL 3.01e-01 0.0621 0.0599 0.434 CD4T L1
ENSG00000203965 EFCAB7 -210252 sc-eQTL 7.59e-01 0.0242 0.0789 0.434 CD4T L1
ENSG00000079739 PGM1 -280291 sc-eQTL 3.49e-01 0.0705 0.0751 0.434 CD8T L1
ENSG00000088035 ALG6 -54455 sc-eQTL 1.07e-01 -0.134 0.0825 0.434 CD8T L1
ENSG00000116641 DOCK7 624734 sc-eQTL 1.21e-01 0.13 0.0836 0.434 CD8T L1
ENSG00000125703 ATG4C 528988 sc-eQTL 5.69e-01 -0.0455 0.0798 0.434 CD8T L1
ENSG00000142856 ITGB3BP -280601 sc-eQTL 4.14e-03 0.254 0.0876 0.434 CD8T L1
ENSG00000162607 USP1 876823 sc-eQTL 3.28e-02 0.148 0.0688 0.434 CD8T L1
ENSG00000203965 EFCAB7 -210252 sc-eQTL 6.47e-01 0.0408 0.089 0.434 CD8T L1
ENSG00000079739 PGM1 -280291 sc-eQTL 5.12e-01 0.054 0.0822 0.43 DC L1
ENSG00000088035 ALG6 -54455 sc-eQTL 2.65e-01 -0.0947 0.0847 0.43 DC L1
ENSG00000116641 DOCK7 624734 sc-eQTL 1.97e-01 0.112 0.0867 0.43 DC L1
ENSG00000125703 ATG4C 528988 sc-eQTL 4.30e-01 0.0538 0.068 0.43 DC L1
ENSG00000142856 ITGB3BP -280601 sc-eQTL 2.73e-02 0.209 0.0941 0.43 DC L1
ENSG00000162607 USP1 876823 sc-eQTL 9.35e-01 -0.00678 0.0832 0.43 DC L1
ENSG00000203965 EFCAB7 -210252 sc-eQTL 9.22e-01 0.00813 0.0829 0.43 DC L1
ENSG00000079739 PGM1 -280291 sc-eQTL 3.64e-01 0.076 0.0835 0.434 Mono L1
ENSG00000088035 ALG6 -54455 sc-eQTL 4.61e-01 -0.0645 0.0872 0.434 Mono L1
ENSG00000116641 DOCK7 624734 sc-eQTL 6.67e-01 0.0364 0.0844 0.434 Mono L1
ENSG00000125703 ATG4C 528988 sc-eQTL 4.83e-01 -0.04 0.057 0.434 Mono L1
ENSG00000142856 ITGB3BP -280601 sc-eQTL 8.74e-03 0.235 0.0887 0.434 Mono L1
ENSG00000162607 USP1 876823 sc-eQTL 3.54e-01 0.0686 0.0739 0.434 Mono L1
ENSG00000079739 PGM1 -280291 sc-eQTL 9.04e-02 0.118 0.0696 0.431 NK L1
ENSG00000088035 ALG6 -54455 sc-eQTL 9.40e-01 -0.00623 0.0822 0.431 NK L1
ENSG00000116641 DOCK7 624734 sc-eQTL 8.48e-01 0.013 0.0677 0.431 NK L1
ENSG00000125703 ATG4C 528988 sc-eQTL 2.93e-01 0.0764 0.0725 0.431 NK L1
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.59e-02 0.217 0.0891 0.431 NK L1
ENSG00000162607 USP1 876823 sc-eQTL 9.33e-01 -0.00676 0.0808 0.431 NK L1
ENSG00000203965 EFCAB7 -210252 sc-eQTL 6.02e-01 0.0512 0.0981 0.431 NK L1
ENSG00000079739 PGM1 -280291 sc-eQTL 3.14e-01 -0.0794 0.0788 0.434 Other_T L1
ENSG00000088035 ALG6 -54455 sc-eQTL 1.97e-02 -0.184 0.0783 0.434 Other_T L1
ENSG00000116641 DOCK7 624734 sc-eQTL 7.73e-01 -0.0234 0.081 0.434 Other_T L1
ENSG00000125703 ATG4C 528988 sc-eQTL 2.65e-01 0.0781 0.0699 0.434 Other_T L1
ENSG00000142856 ITGB3BP -280601 sc-eQTL 2.29e-01 -0.0748 0.062 0.434 Other_T L1
ENSG00000162607 USP1 876823 sc-eQTL 3.03e-01 -0.0555 0.0538 0.434 Other_T L1
ENSG00000203965 EFCAB7 -210252 sc-eQTL 6.76e-01 0.0402 0.0959 0.434 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -280291 sc-eQTL 7.59e-01 0.0325 0.106 0.434 B_Activated L2
ENSG00000088035 ALG6 -54455 sc-eQTL 9.11e-01 0.0113 0.101 0.434 B_Activated L2
ENSG00000116641 DOCK7 624734 sc-eQTL 8.86e-02 -0.16 0.0935 0.434 B_Activated L2
ENSG00000125703 ATG4C 528988 sc-eQTL 1.16e-01 -0.155 0.0985 0.434 B_Activated L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 3.03e-01 0.0999 0.0966 0.434 B_Activated L2
ENSG00000162607 USP1 876823 sc-eQTL 4.15e-01 0.0857 0.105 0.434 B_Activated L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 1.29e-01 0.139 0.0911 0.434 B_Activated L2
ENSG00000079739 PGM1 -280291 sc-eQTL 5.59e-01 -0.0556 0.095 0.436 B_Intermediate L2
ENSG00000088035 ALG6 -54455 sc-eQTL 2.93e-01 0.102 0.0963 0.436 B_Intermediate L2
ENSG00000116641 DOCK7 624734 sc-eQTL 5.05e-01 -0.0615 0.0922 0.436 B_Intermediate L2
ENSG00000125703 ATG4C 528988 sc-eQTL 5.17e-01 0.0506 0.078 0.436 B_Intermediate L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.99e-02 0.215 0.0918 0.436 B_Intermediate L2
ENSG00000162607 USP1 876823 sc-eQTL 4.51e-01 0.0701 0.0928 0.436 B_Intermediate L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 7.50e-01 0.0294 0.0921 0.436 B_Intermediate L2
ENSG00000079739 PGM1 -280291 sc-eQTL 1.03e-01 0.154 0.0942 0.438 B_Memory L2
ENSG00000088035 ALG6 -54455 sc-eQTL 6.10e-01 0.0492 0.0963 0.438 B_Memory L2
ENSG00000116641 DOCK7 624734 sc-eQTL 8.58e-01 0.0162 0.0904 0.438 B_Memory L2
ENSG00000125703 ATG4C 528988 sc-eQTL 3.44e-01 0.0813 0.0857 0.438 B_Memory L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 4.37e-02 0.198 0.0974 0.438 B_Memory L2
ENSG00000162607 USP1 876823 sc-eQTL 6.29e-01 0.048 0.0991 0.438 B_Memory L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 1.93e-01 0.127 0.0972 0.438 B_Memory L2
ENSG00000079739 PGM1 -280291 sc-eQTL 3.72e-01 -0.0842 0.0941 0.434 B_Naive1 L2
ENSG00000088035 ALG6 -54455 sc-eQTL 3.11e-01 0.096 0.0944 0.434 B_Naive1 L2
ENSG00000116641 DOCK7 624734 sc-eQTL 6.31e-01 -0.0436 0.0907 0.434 B_Naive1 L2
ENSG00000125703 ATG4C 528988 sc-eQTL 8.32e-01 0.0149 0.0699 0.434 B_Naive1 L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.33e-02 0.228 0.0913 0.434 B_Naive1 L2
ENSG00000162607 USP1 876823 sc-eQTL 9.60e-01 0.00413 0.0815 0.434 B_Naive1 L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 1.04e-01 0.16 0.0983 0.434 B_Naive1 L2
ENSG00000079739 PGM1 -280291 sc-eQTL 1.19e-01 0.144 0.092 0.436 B_Naive2 L2
ENSG00000088035 ALG6 -54455 sc-eQTL 9.11e-01 0.0108 0.0964 0.436 B_Naive2 L2
ENSG00000116641 DOCK7 624734 sc-eQTL 4.43e-01 0.0712 0.0926 0.436 B_Naive2 L2
ENSG00000125703 ATG4C 528988 sc-eQTL 7.84e-01 -0.0244 0.0892 0.436 B_Naive2 L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 2.58e-01 0.109 0.0965 0.436 B_Naive2 L2
ENSG00000162607 USP1 876823 sc-eQTL 3.20e-01 0.0917 0.0919 0.436 B_Naive2 L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 5.90e-01 -0.0519 0.0963 0.436 B_Naive2 L2
ENSG00000079739 PGM1 -280291 sc-eQTL 4.54e-01 0.0701 0.0933 0.432 CD4_CTL L2
ENSG00000088035 ALG6 -54455 sc-eQTL 8.15e-02 0.172 0.098 0.432 CD4_CTL L2
ENSG00000116641 DOCK7 624734 sc-eQTL 4.85e-01 0.0603 0.0863 0.432 CD4_CTL L2
ENSG00000125703 ATG4C 528988 sc-eQTL 9.89e-01 0.00126 0.0894 0.432 CD4_CTL L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 8.28e-01 -0.0207 0.0956 0.432 CD4_CTL L2
ENSG00000162607 USP1 876823 sc-eQTL 6.60e-02 0.167 0.0902 0.432 CD4_CTL L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 9.70e-02 -0.15 0.0902 0.432 CD4_CTL L2
ENSG00000079739 PGM1 -280291 sc-eQTL 3.90e-01 -0.0666 0.0773 0.434 CD4_Naive L2
ENSG00000088035 ALG6 -54455 sc-eQTL 1.32e-01 -0.126 0.0836 0.434 CD4_Naive L2
ENSG00000116641 DOCK7 624734 sc-eQTL 6.61e-01 0.0363 0.0826 0.434 CD4_Naive L2
ENSG00000125703 ATG4C 528988 sc-eQTL 4.42e-01 0.0562 0.0729 0.434 CD4_Naive L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 5.51e-02 0.171 0.0885 0.434 CD4_Naive L2
ENSG00000162607 USP1 876823 sc-eQTL 1.13e-01 0.108 0.0678 0.434 CD4_Naive L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 2.96e-01 0.0926 0.0884 0.434 CD4_Naive L2
ENSG00000079739 PGM1 -280291 sc-eQTL 4.04e-01 0.0666 0.0798 0.434 CD4_TCM L2
ENSG00000088035 ALG6 -54455 sc-eQTL 2.41e-01 0.109 0.0925 0.434 CD4_TCM L2
ENSG00000116641 DOCK7 624734 sc-eQTL 1.89e-01 0.108 0.0819 0.434 CD4_TCM L2
ENSG00000125703 ATG4C 528988 sc-eQTL 8.29e-01 0.0174 0.08 0.434 CD4_TCM L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 6.11e-03 0.257 0.0927 0.434 CD4_TCM L2
ENSG00000162607 USP1 876823 sc-eQTL 8.16e-01 0.018 0.0773 0.434 CD4_TCM L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 8.48e-01 -0.0176 0.0913 0.434 CD4_TCM L2
ENSG00000079739 PGM1 -280291 sc-eQTL 5.68e-01 0.0541 0.0947 0.434 CD4_TEM L2
ENSG00000088035 ALG6 -54455 sc-eQTL 4.07e-01 -0.0791 0.0951 0.434 CD4_TEM L2
ENSG00000116641 DOCK7 624734 sc-eQTL 5.40e-01 -0.057 0.0928 0.434 CD4_TEM L2
ENSG00000125703 ATG4C 528988 sc-eQTL 2.98e-01 0.094 0.09 0.434 CD4_TEM L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.28e-01 0.142 0.0926 0.434 CD4_TEM L2
ENSG00000162607 USP1 876823 sc-eQTL 3.06e-01 0.0903 0.088 0.434 CD4_TEM L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 2.64e-01 -0.108 0.0962 0.434 CD4_TEM L2
ENSG00000079739 PGM1 -280291 sc-eQTL 8.50e-01 0.0162 0.0855 0.434 CD8_CTL L2
ENSG00000088035 ALG6 -54455 sc-eQTL 2.56e-01 -0.103 0.0906 0.434 CD8_CTL L2
ENSG00000116641 DOCK7 624734 sc-eQTL 1.58e-02 0.207 0.0851 0.434 CD8_CTL L2
ENSG00000125703 ATG4C 528988 sc-eQTL 3.98e-01 -0.0777 0.0917 0.434 CD8_CTL L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.90e-01 0.125 0.0951 0.434 CD8_CTL L2
ENSG00000162607 USP1 876823 sc-eQTL 6.64e-01 0.0372 0.0855 0.434 CD8_CTL L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 8.84e-01 0.0143 0.0978 0.434 CD8_CTL L2
ENSG00000079739 PGM1 -280291 sc-eQTL 7.57e-01 0.0268 0.0863 0.434 CD8_Naive L2
ENSG00000088035 ALG6 -54455 sc-eQTL 1.46e-01 -0.13 0.0889 0.434 CD8_Naive L2
ENSG00000116641 DOCK7 624734 sc-eQTL 9.25e-02 0.155 0.0918 0.434 CD8_Naive L2
ENSG00000125703 ATG4C 528988 sc-eQTL 9.73e-01 -0.00306 0.0887 0.434 CD8_Naive L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 6.78e-04 0.301 0.0874 0.434 CD8_Naive L2
ENSG00000162607 USP1 876823 sc-eQTL 1.80e-01 0.102 0.0756 0.434 CD8_Naive L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 5.19e-02 0.164 0.0839 0.434 CD8_Naive L2
ENSG00000079739 PGM1 -280291 sc-eQTL 7.53e-01 0.03 0.0954 0.442 CD8_TCM L2
ENSG00000088035 ALG6 -54455 sc-eQTL 5.14e-01 0.0631 0.0965 0.442 CD8_TCM L2
ENSG00000116641 DOCK7 624734 sc-eQTL 4.19e-02 -0.191 0.0933 0.442 CD8_TCM L2
ENSG00000125703 ATG4C 528988 sc-eQTL 7.41e-02 -0.172 0.0956 0.442 CD8_TCM L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 4.43e-02 0.188 0.0927 0.442 CD8_TCM L2
ENSG00000162607 USP1 876823 sc-eQTL 1.41e-01 0.133 0.0897 0.442 CD8_TCM L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 2.72e-01 0.105 0.0952 0.442 CD8_TCM L2
ENSG00000079739 PGM1 -280291 sc-eQTL 2.83e-01 0.102 0.0948 0.436 CD8_TEM L2
ENSG00000088035 ALG6 -54455 sc-eQTL 7.45e-01 -0.0311 0.0954 0.436 CD8_TEM L2
ENSG00000116641 DOCK7 624734 sc-eQTL 9.61e-01 -0.00458 0.0925 0.436 CD8_TEM L2
ENSG00000125703 ATG4C 528988 sc-eQTL 9.85e-01 0.00162 0.0889 0.436 CD8_TEM L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 4.82e-01 0.0677 0.0961 0.436 CD8_TEM L2
ENSG00000162607 USP1 876823 sc-eQTL 7.93e-01 0.0241 0.0918 0.436 CD8_TEM L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 8.40e-01 0.0189 0.0933 0.436 CD8_TEM L2
ENSG00000079739 PGM1 -280291 sc-eQTL 8.97e-01 -0.0118 0.0909 0.433 MAIT L2
ENSG00000088035 ALG6 -54455 sc-eQTL 7.28e-01 0.0314 0.09 0.433 MAIT L2
ENSG00000116641 DOCK7 624734 sc-eQTL 5.19e-01 -0.0557 0.0862 0.433 MAIT L2
ENSG00000125703 ATG4C 528988 sc-eQTL 8.34e-01 -0.0191 0.0909 0.433 MAIT L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 2.94e-01 -0.0957 0.0909 0.433 MAIT L2
ENSG00000162607 USP1 876823 sc-eQTL 2.92e-01 -0.0952 0.0902 0.433 MAIT L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 9.41e-01 0.00697 0.0938 0.433 MAIT L2
ENSG00000079739 PGM1 -280291 sc-eQTL 9.10e-01 0.0105 0.0933 0.427 NK_CD56bright L2
ENSG00000088035 ALG6 -54455 sc-eQTL 6.11e-01 -0.0487 0.0956 0.427 NK_CD56bright L2
ENSG00000116641 DOCK7 624734 sc-eQTL 7.59e-01 -0.0254 0.0829 0.427 NK_CD56bright L2
ENSG00000125703 ATG4C 528988 sc-eQTL 6.90e-01 0.0369 0.0926 0.427 NK_CD56bright L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 6.41e-02 0.178 0.0956 0.427 NK_CD56bright L2
ENSG00000162607 USP1 876823 sc-eQTL 8.33e-01 -0.0209 0.0994 0.427 NK_CD56bright L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 7.23e-01 0.0337 0.0951 0.427 NK_CD56bright L2
ENSG00000079739 PGM1 -280291 sc-eQTL 5.01e-01 0.049 0.0726 0.429 NK_CD56dim L2
ENSG00000088035 ALG6 -54455 sc-eQTL 4.09e-01 0.0761 0.0921 0.429 NK_CD56dim L2
ENSG00000116641 DOCK7 624734 sc-eQTL 4.59e-01 0.0595 0.0802 0.429 NK_CD56dim L2
ENSG00000125703 ATG4C 528988 sc-eQTL 2.72e-01 -0.0895 0.0813 0.429 NK_CD56dim L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 8.99e-02 0.157 0.0921 0.429 NK_CD56dim L2
ENSG00000162607 USP1 876823 sc-eQTL 4.77e-01 0.064 0.0899 0.429 NK_CD56dim L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 3.23e-01 0.099 0.1 0.429 NK_CD56dim L2
ENSG00000079739 PGM1 -280291 sc-eQTL 9.59e-01 -0.0051 0.0986 0.432 NK_HLA L2
ENSG00000088035 ALG6 -54455 sc-eQTL 5.43e-02 -0.196 0.101 0.432 NK_HLA L2
ENSG00000116641 DOCK7 624734 sc-eQTL 4.77e-01 0.0556 0.0781 0.432 NK_HLA L2
ENSG00000125703 ATG4C 528988 sc-eQTL 2.05e-01 -0.115 0.0905 0.432 NK_HLA L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 8.28e-01 0.0207 0.0954 0.432 NK_HLA L2
ENSG00000162607 USP1 876823 sc-eQTL 9.50e-01 -0.00622 0.0999 0.432 NK_HLA L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 4.08e-01 -0.0752 0.0907 0.432 NK_HLA L2
ENSG00000079739 PGM1 -280291 sc-eQTL 5.67e-01 0.0452 0.079 0.429 NK_cytokine L2
ENSG00000088035 ALG6 -54455 sc-eQTL 5.28e-01 0.0565 0.0892 0.429 NK_cytokine L2
ENSG00000116641 DOCK7 624734 sc-eQTL 4.52e-01 0.0622 0.0826 0.429 NK_cytokine L2
ENSG00000125703 ATG4C 528988 sc-eQTL 7.37e-03 0.225 0.0832 0.429 NK_cytokine L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 5.80e-02 0.166 0.0869 0.429 NK_cytokine L2
ENSG00000162607 USP1 876823 sc-eQTL 1.03e-01 -0.15 0.0916 0.429 NK_cytokine L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 7.83e-01 -0.0257 0.0934 0.429 NK_cytokine L2
ENSG00000079739 PGM1 -280291 sc-eQTL 4.21e-01 0.0924 0.114 0.422 PB L2
ENSG00000088035 ALG6 -54455 sc-eQTL 3.58e-01 -0.111 0.12 0.422 PB L2
ENSG00000116641 DOCK7 624734 sc-eQTL 7.63e-01 0.0389 0.129 0.422 PB L2
ENSG00000125703 ATG4C 528988 sc-eQTL 3.42e-01 -0.107 0.112 0.422 PB L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 2.74e-01 0.123 0.111 0.422 PB L2
ENSG00000162607 USP1 876823 sc-eQTL 1.41e-02 -0.271 0.109 0.422 PB L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 3.93e-01 0.105 0.123 0.422 PB L2
ENSG00000079739 PGM1 -280291 sc-eQTL 5.17e-01 -0.0557 0.0859 0.435 Pro_T L2
ENSG00000088035 ALG6 -54455 sc-eQTL 6.59e-01 -0.0386 0.0874 0.435 Pro_T L2
ENSG00000116641 DOCK7 624734 sc-eQTL 3.77e-01 0.0775 0.0876 0.435 Pro_T L2
ENSG00000125703 ATG4C 528988 sc-eQTL 8.53e-01 0.0143 0.0768 0.435 Pro_T L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 8.29e-01 -0.0167 0.0771 0.435 Pro_T L2
ENSG00000162607 USP1 876823 sc-eQTL 3.37e-01 -0.0509 0.0529 0.435 Pro_T L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 8.72e-01 -0.0145 0.0895 0.435 Pro_T L2
ENSG00000079739 PGM1 -280291 sc-eQTL 7.68e-03 0.241 0.0896 0.434 Treg L2
ENSG00000088035 ALG6 -54455 sc-eQTL 5.13e-02 -0.189 0.0966 0.434 Treg L2
ENSG00000116641 DOCK7 624734 sc-eQTL 1.24e-01 0.137 0.089 0.434 Treg L2
ENSG00000125703 ATG4C 528988 sc-eQTL 5.67e-02 -0.174 0.0906 0.434 Treg L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 6.04e-02 0.179 0.0948 0.434 Treg L2
ENSG00000162607 USP1 876823 sc-eQTL 5.02e-01 -0.0622 0.0924 0.434 Treg L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 7.16e-01 0.0333 0.0915 0.434 Treg L2
ENSG00000079739 PGM1 -280291 sc-eQTL 1.92e-01 -0.119 0.091 0.424 cDC L2
ENSG00000088035 ALG6 -54455 sc-eQTL 3.55e-01 0.0859 0.0925 0.424 cDC L2
ENSG00000116641 DOCK7 624734 sc-eQTL 3.94e-01 0.0776 0.0908 0.424 cDC L2
ENSG00000125703 ATG4C 528988 sc-eQTL 9.11e-01 0.00883 0.079 0.424 cDC L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 3.37e-01 0.0961 0.0999 0.424 cDC L2
ENSG00000162607 USP1 876823 sc-eQTL 8.73e-01 -0.0143 0.0892 0.424 cDC L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 3.89e-01 0.0694 0.0803 0.424 cDC L2
ENSG00000079739 PGM1 -280291 sc-eQTL 9.02e-01 0.0107 0.086 0.434 cMono_IL1B L2
ENSG00000088035 ALG6 -54455 sc-eQTL 4.00e-01 -0.0725 0.086 0.434 cMono_IL1B L2
ENSG00000116641 DOCK7 624734 sc-eQTL 5.16e-01 -0.059 0.0907 0.434 cMono_IL1B L2
ENSG00000125703 ATG4C 528988 sc-eQTL 3.50e-01 -0.0596 0.0637 0.434 cMono_IL1B L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 5.40e-02 0.174 0.0896 0.434 cMono_IL1B L2
ENSG00000162607 USP1 876823 sc-eQTL 6.89e-01 0.032 0.0797 0.434 cMono_IL1B L2
ENSG00000079739 PGM1 -280291 sc-eQTL 1.67e-01 0.132 0.0949 0.434 cMono_S100A L2
ENSG00000088035 ALG6 -54455 sc-eQTL 5.72e-01 0.0547 0.0966 0.434 cMono_S100A L2
ENSG00000116641 DOCK7 624734 sc-eQTL 8.97e-01 -0.0116 0.0896 0.434 cMono_S100A L2
ENSG00000125703 ATG4C 528988 sc-eQTL 6.75e-01 0.0326 0.0775 0.434 cMono_S100A L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.68e-03 0.272 0.0855 0.434 cMono_S100A L2
ENSG00000162607 USP1 876823 sc-eQTL 7.61e-02 0.159 0.0894 0.434 cMono_S100A L2
ENSG00000079739 PGM1 -280291 sc-eQTL 1.00e+00 5.07e-05 0.104 0.448 gdT L2
ENSG00000088035 ALG6 -54455 sc-eQTL 1.30e-02 -0.274 0.109 0.448 gdT L2
ENSG00000116641 DOCK7 624734 sc-eQTL 5.07e-01 0.0724 0.109 0.448 gdT L2
ENSG00000125703 ATG4C 528988 sc-eQTL 1.18e-01 0.162 0.103 0.448 gdT L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 9.46e-02 -0.184 0.11 0.448 gdT L2
ENSG00000162607 USP1 876823 sc-eQTL 5.45e-01 0.0634 0.105 0.448 gdT L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 4.64e-01 0.0797 0.109 0.448 gdT L2
ENSG00000079739 PGM1 -280291 sc-eQTL 8.09e-01 0.023 0.0951 0.427 intMono L2
ENSG00000088035 ALG6 -54455 sc-eQTL 2.26e-01 -0.107 0.0882 0.427 intMono L2
ENSG00000116641 DOCK7 624734 sc-eQTL 9.38e-01 0.00706 0.0904 0.427 intMono L2
ENSG00000125703 ATG4C 528988 sc-eQTL 4.14e-01 -0.0705 0.0862 0.427 intMono L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.90e-01 0.125 0.0947 0.427 intMono L2
ENSG00000162607 USP1 876823 sc-eQTL 3.94e-01 0.0824 0.0966 0.427 intMono L2
ENSG00000079739 PGM1 -280291 sc-eQTL 7.66e-01 0.0256 0.0857 0.423 ncMono L2
ENSG00000088035 ALG6 -54455 sc-eQTL 5.89e-01 -0.051 0.0941 0.423 ncMono L2
ENSG00000116641 DOCK7 624734 sc-eQTL 8.47e-01 0.0179 0.0927 0.423 ncMono L2
ENSG00000125703 ATG4C 528988 sc-eQTL 8.73e-01 0.0138 0.0866 0.423 ncMono L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 4.98e-01 0.0615 0.0904 0.423 ncMono L2
ENSG00000162607 USP1 876823 sc-eQTL 6.09e-01 -0.0474 0.0925 0.423 ncMono L2
ENSG00000079739 PGM1 -280291 sc-eQTL 7.49e-01 0.0329 0.102 0.429 pDC L2
ENSG00000088035 ALG6 -54455 sc-eQTL 5.18e-03 -0.276 0.0973 0.429 pDC L2
ENSG00000116641 DOCK7 624734 sc-eQTL 5.93e-01 0.0546 0.102 0.429 pDC L2
ENSG00000125703 ATG4C 528988 sc-eQTL 3.61e-01 0.0836 0.0913 0.429 pDC L2
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.97e-02 0.238 0.101 0.429 pDC L2
ENSG00000162607 USP1 876823 sc-eQTL 6.21e-01 -0.0518 0.105 0.429 pDC L2
ENSG00000203965 EFCAB7 -210252 sc-eQTL 2.73e-01 -0.0997 0.0905 0.429 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -280291 sc-eQTL 4.00e-01 0.0746 0.0885 0.434 B_Memory LOneK1K
ENSG00000088035 ALG6 -54455 sc-eQTL 1.30e-01 0.148 0.0975 0.434 B_Memory LOneK1K
ENSG00000116641 DOCK7 624734 sc-eQTL 3.84e-01 -0.0741 0.0849 0.434 B_Memory LOneK1K
ENSG00000125703 ATG4C 528988 sc-eQTL 5.50e-01 0.0411 0.0687 0.434 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -280601 sc-eQTL 2.18e-03 0.274 0.0884 0.434 B_Memory LOneK1K
ENSG00000162607 USP1 876823 sc-eQTL 4.04e-01 0.0733 0.0876 0.434 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -210252 sc-eQTL 8.28e-02 0.163 0.0935 0.434 B_Memory LOneK1K
ENSG00000079739 PGM1 -280291 sc-eQTL 6.37e-01 0.0432 0.0914 0.434 B_Naive LOneK1K
ENSG00000088035 ALG6 -54455 sc-eQTL 6.22e-01 0.0465 0.0941 0.434 B_Naive LOneK1K
ENSG00000116641 DOCK7 624734 sc-eQTL 6.71e-01 0.0373 0.0879 0.434 B_Naive LOneK1K
ENSG00000125703 ATG4C 528988 sc-eQTL 8.82e-01 0.00996 0.0671 0.434 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -280601 sc-eQTL 1.81e-02 0.223 0.0936 0.434 B_Naive LOneK1K
ENSG00000162607 USP1 876823 sc-eQTL 8.40e-01 0.0164 0.0815 0.434 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -210252 sc-eQTL 2.42e-01 0.112 0.0951 0.434 B_Naive LOneK1K
ENSG00000079739 PGM1 -280291 sc-eQTL 3.14e-01 0.0887 0.0878 0.434 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -54455 sc-eQTL 5.38e-01 -0.0525 0.0851 0.434 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 624734 sc-eQTL 5.52e-01 -0.0511 0.0857 0.434 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 528988 sc-eQTL 7.21e-01 -0.0212 0.0593 0.434 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -280601 sc-eQTL 4.50e-03 0.247 0.0861 0.434 CD14_Mono LOneK1K
ENSG00000162607 USP1 876823 sc-eQTL 3.13e-01 0.0756 0.0748 0.434 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -280291 sc-eQTL 6.65e-01 0.0361 0.0832 0.431 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -54455 sc-eQTL 3.44e-01 -0.0894 0.0943 0.431 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 624734 sc-eQTL 8.57e-01 0.0169 0.0935 0.431 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 528988 sc-eQTL 8.13e-01 -0.0189 0.0797 0.431 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -280601 sc-eQTL 4.42e-01 0.0712 0.0925 0.431 CD16_Mono LOneK1K
ENSG00000162607 USP1 876823 sc-eQTL 5.01e-01 -0.0586 0.0869 0.431 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -280291 sc-eQTL 1.72e-01 0.0972 0.071 0.429 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -54455 sc-eQTL 9.68e-01 0.00342 0.0856 0.429 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 624734 sc-eQTL 6.37e-01 0.0362 0.0766 0.429 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 528988 sc-eQTL 4.44e-01 0.0586 0.0764 0.429 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -280601 sc-eQTL 3.11e-02 0.195 0.0897 0.429 NK_CD56dim LOneK1K
ENSG00000162607 USP1 876823 sc-eQTL 6.07e-01 -0.0424 0.0823 0.429 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -210252 sc-eQTL 6.31e-01 0.0481 0.1 0.429 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000088035 ALG6 -54455 eQTL 0.0388 -0.0274 0.0132 0.0 0.0 0.441
ENSG00000142856 ITGB3BP -280601 eQTL 1.82e-08 0.164 0.0288 0.0 0.0 0.441

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 ALG6 -54455 8.09e-06 9.61e-06 1.28e-06 4.85e-06 2.14e-06 3.9e-06 1.02e-05 1.55e-06 8.22e-06 4.89e-06 1.21e-05 5.25e-06 1.36e-05 3.85e-06 2.49e-06 6.09e-06 3.97e-06 5.81e-06 2.48e-06 2.57e-06 4.44e-06 8.49e-06 7.15e-06 3.08e-06 1.31e-05 2.89e-06 4.6e-06 3.37e-06 8.33e-06 7.93e-06 5.06e-06 7.35e-07 1.02e-06 2.84e-06 3.93e-06 2.15e-06 1.4e-06 1.85e-06 1.63e-06 1.03e-06 8.81e-07 1.24e-05 9.28e-07 1.5e-07 7.75e-07 1.57e-06 1.23e-06 7.01e-07 5.78e-07
ENSG00000116652 \N -233962 1.28e-06 1.22e-06 3.35e-07 1.14e-06 2.98e-07 5.95e-07 1.48e-06 3.49e-07 1.5e-06 5.06e-07 1.85e-06 7.84e-07 2.47e-06 2.81e-07 5.62e-07 8.22e-07 8.95e-07 6.96e-07 8.21e-07 6.4e-07 6.12e-07 1.72e-06 8.94e-07 6.23e-07 2.22e-06 4.28e-07 9.41e-07 7.14e-07 1.46e-06 1.2e-06 7.64e-07 1.55e-07 2.42e-07 6.99e-07 5.49e-07 4.59e-07 4.79e-07 1.92e-07 3.6e-07 2.5e-07 2.89e-07 1.68e-06 6.65e-08 7.3e-08 1.86e-07 1.27e-07 2.33e-07 8.67e-08 9.42e-08
ENSG00000142856 ITGB3BP -280601 1.28e-06 9.1e-07 2.05e-07 4.4e-07 1.56e-07 4.35e-07 1.16e-06 2.65e-07 1.13e-06 3.8e-07 1.41e-06 6.06e-07 1.73e-06 2.54e-07 4.12e-07 5.7e-07 7.96e-07 5.67e-07 4.54e-07 4.65e-07 2.83e-07 1.04e-06 7.96e-07 5.36e-07 1.98e-06 2.54e-07 6.37e-07 5.33e-07 9.4e-07 1.1e-06 5.45e-07 4.57e-08 1.81e-07 3.49e-07 4.2e-07 2.91e-07 2.46e-07 1.5e-07 1.49e-07 2.99e-08 2.18e-07 1.54e-06 7.23e-08 2.67e-08 1.8e-07 7.43e-08 1.76e-07 7.19e-08 5.32e-08